Prupe.1G250200_v2.0.a1

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012297
Physical Location & Seq
Reverse (-)
26234726 .. 26236500
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G250200.1

Sequence Viewer

Length: 1029 bp
ATGTTAGGAGGCAACAATGGTAACGCCATGCTTCCTGTTTTCCTGGATGAAAATCGCTTCCCATATCCTACAAATGCTTCAAGTCAGCTGCAGTTGTTTGGAAATGTACCAGCTGGATGTAATGTTGATCCAGTAAATTATTTTGGAACTGAGCACATCACTCCCATGCTTCGGCCTAATAAACGAAGCAGGGAAATAGAAGATATCTCAAGACAGCAGAAGCTTCAGATTTCTTTGAACTATAATGTCTGTCAAGATGAAGCTGATCGCTCGGCTAGCATTCCAAACCCAAACCCTGTATCAACTGGGTTAAGGCTATCATATGATGACGATGAGCGCAACTCGACGGTTACTTCTGCAAGTGGAAGTATGACAGCTGCACCTTCAATGATCCTATCCTTAGGTGACAATATCAGAACTGAGCTGGATCGGCAGAAGGAAGAGTTTGATCAGTACATCAAAATTCAGGAGGAACACTTGGCAAAGGGGGTAAGGGACATGAAGCAGAGACATATGGCTTCTTTCCTTGCTGCTATAGAGAAAGGTGTCAGCAAAAAGATACGTGAGAAAGACTTGGAAATTGAGAACATGAACCGTAAGAACCGAGAACTGGTTGATAGAATTAAACAGGTAGCTGTGGAAGCCCAAAATTGGCACTACAGAGCAAAGTACAATGAGTCAGTTGTTAATGTCCTGAAGAGCAACCTCCAGCAAGCAATTTCACAGGGTGCTGACCAAGGGAAGGAGGGATTTGGCGACAGTGAAGTTGATGATGCGGCCTCATACATTGATCCAAATAACTACCTGAGCGTTCCAGTCGGGCCTGTGAAATCTGTATCCAAGAATTACCTAGGCTTGAAGGAGCAAATGGCTTCCAGAGCATGCAAGGCATGCAAAGCTAAGGAGGTCTCCATCTTGTTGATGCCTTGTAGGCACCTGTGTTTATGTAAGGACTGTGATGGTTTTGTGAGTGTTTGCCCTGTATGTGAGTCAATGAAAACCGCCAGTTTCCAAGTGTACTTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

343

Amino Acids

38.18

Weight (kDa)

6.27

Isoelectric Point (pI)

49.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 933
AciI CCGC 2 cut(s) 776, 1002
AclWI GGATC 4 cut(s) 122, 385, 435, 785
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 209, 716
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 4 cut(s) 108, 455, 671, 1019
AfiI CCNNNNNNNGG 4 cut(s) 171, 610, 651, 742
AgsI TTSAA 4 cut(s) 81, 238, 387, 859
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 8 cut(s) 88, 113, 223, 263, 377, 424, 635, 899
AluI AGCT 8 cut(s) 88, 113, 223, 263, 377, 424, 635, 899
Alw21I GWGCWC 1 cut(s) 156
Alw26I GTCTC 2 cut(s) 502, 913
AlwI GGATC 4 cut(s) 122, 385, 435, 785
AoxI GGCC 3 cut(s) 173, 777, 821
ApeKI GCWGC 3 cut(s) 88, 377, 530
ApoI RAATTY 1 cut(s) 462
AspA2I CCTAGG 1 cut(s) 850
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 821
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 1 cut(s) 275
AvrII CCTAGG 1 cut(s) 850
AxyI CCTNAGG 1 cut(s) 400
BanI GGYRCC 1 cut(s) 933
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 75, 364, 517
BccI CCATC 2 cut(s) 920, 953
BciT130I CCWGG 1 cut(s) 44
BciVI GTATCC 1 cut(s) 847
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 502, 913
BfaI CTAG 2 cut(s) 276, 851
BfmI CTRYAG 3 cut(s) 89, 534, 658
BfuI GTATCC 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 931
BisI GCNGC 4 cut(s) 89, 378, 531, 777
BlnI CCTAGG 1 cut(s) 850
BlsI GCNGC 4 cut(s) 90, 379, 532, 778
Bme1390I CCNGG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 763, 912
BmtI GCTAGC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 315
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 2 cut(s) 806, 900
BpuEI CTTGAG 1 cut(s) 193
BsaAI YACGTR 1 cut(s) 563
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 913
BsaJI CCNNGG 2 cut(s) 736, 850
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 610, 651, 742
Bse1I ACTGG 5 cut(s) 131, 310, 615, 815, 1005
Bse21I CCTNAGG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 736, 850
BseGI GGATG 2 cut(s) 52, 122
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 4 cut(s) 171, 610, 651, 742
BseMII CTCAG 3 cut(s) 141, 411, 797
BseNI ACTGG 5 cut(s) 131, 310, 615, 815, 1005
BseXI GCAGC 3 cut(s) 75, 364, 517
BsgI GTGCAG 1 cut(s) 363
BshFI GGCC 3 cut(s) 175, 779, 823
BshNI GGYRCC 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 156
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 4 cut(s) 171, 610, 651, 742
BsmAI GTCTC 2 cut(s) 502, 913
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 3 cut(s) 175, 779, 823
Bso31I GGTCTC 1 cut(s) 913
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 6 cut(s) 127, 265, 390, 427, 448, 790
BspACI CCGC 2 cut(s) 776, 1002
BspANI GGCC 3 cut(s) 175, 779, 823
BspCNI CTCAG 3 cut(s) 142, 412, 798
BspLI GGNNCC 1 cut(s) 935
BspMAI CTGCAG 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 4 cut(s) 122, 385, 435, 785
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 933
BspTNI GGTCTC 1 cut(s) 913
BsrI ACTGG 5 cut(s) 131, 310, 615, 815, 1005
BssECI CCNNGG 2 cut(s) 736, 850
BssMI GATC 6 cut(s) 127, 265, 390, 427, 448, 790
BssT1I CCWWGG 2 cut(s) 736, 850
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 4 cut(s) 349, 596, 761, 956
Bst6I CTCTTC 2 cut(s) 435, 692
BstAPI GCANNNNNTGC 1 cut(s) 891
BstBAI YACGTR 1 cut(s) 563
BstC8I GCNNGC 4 cut(s) 277, 714, 883, 892
BstDEI CTNAG 5 cut(s) 150, 400, 420, 806, 900
BstF5I GGATG 2 cut(s) 52, 122
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 6 cut(s) 130, 268, 393, 430, 451, 793
BstMAI GTCTC 2 cut(s) 502, 913
BstMBI GATC 6 cut(s) 127, 265, 390, 427, 448, 790
BstMWI GCNNNNNNNGC 8 cut(s) 276, 430, 641, 878, 887, 891, 896, 931
BstNI CCWGG 1 cut(s) 44
BstNSI RCATGY 2 cut(s) 885, 894
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 3 cut(s) 89, 534, 658
BstV1I GCAGC 3 cut(s) 75, 364, 517
Bsu36I CCTNAGG 1 cut(s) 400
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 3 cut(s) 175, 779, 823
BtsCI GGATG 2 cut(s) 52, 122
BtsIMutI CAGTG 1 cut(s) 766
Cac8I GCNNGC 4 cut(s) 277, 714, 883, 892
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 821
Csp6I GTAC 4 cut(s) 107, 454, 670, 1018
CviAII CATG 6 cut(s) 28, 166, 499, 589, 882, 891
CviQI GTAC 4 cut(s) 107, 454, 670, 1018
DdeI CTNAG 5 cut(s) 150, 400, 420, 806, 900
DpnI GATC 6 cut(s) 129, 267, 392, 429, 450, 792
DpnII GATC 6 cut(s) 127, 265, 390, 427, 448, 790
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 435, 692
EarI CTCTTC 2 cut(s) 435, 692
Eco130I CCWWGG 2 cut(s) 736, 850
Eco31I GGTCTC 1 cut(s) 913
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 2 cut(s) 209, 716
Eco81I CCTNAGG 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 42
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 736, 850
ErhI CCWWGG 2 cut(s) 736, 850
FaeI CATG 6 cut(s) 31, 169, 502, 592, 885, 894
FaqI GGGAC 1 cut(s) 509
FatI CATG 6 cut(s) 27, 165, 498, 588, 881, 890
FauNDI CATATG 2 cut(s) 322, 513
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 89, 378, 531, 777
FokI GGATG 2 cut(s) 59, 129
Fsp4HI GCNGC 4 cut(s) 89, 378, 531, 777
FspBI CTAG 2 cut(s) 276, 851
GlaI GCGC 1 cut(s) 338
GluI GCNGC 4 cut(s) 89, 378, 531, 777
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 3 cut(s) 175, 779, 823
HhaI GCGC 1 cut(s) 339
Hin1II CATG 6 cut(s) 31, 169, 502, 592, 885, 894
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 677, 989
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 1018
Hpy188I TCNGA 2 cut(s) 228, 416
Hpy188III TCNNGA 5 cut(s) 210, 254, 467, 694, 876
Hpy8I GTNNAC 1 cut(s) 1018
Hpy99I CGWCG 1 cut(s) 349
HpyAV CCTTC 4 cut(s) 393, 430, 736, 853
HpyCH4III ACNGT 4 cut(s) 349, 596, 761, 956
HpyCH4IV ACGT 1 cut(s) 562
HpyCH4V TGCA 5 cut(s) 91, 359, 380, 885, 894
HpyF10VI GCNNNNNNNGC 8 cut(s) 276, 430, 641, 878, 887, 891, 896, 931
HpyF3I CTNAG 5 cut(s) 150, 400, 420, 806, 900
HpySE526I ACGT 1 cut(s) 562
Hsp92II CATG 6 cut(s) 31, 169, 502, 592, 885, 894
HspAI GCGC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 6 cut(s) 127, 265, 390, 427, 448, 790
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 75, 364, 517
LweI GCATC 2 cut(s) 763, 912
MaeI CTAG 2 cut(s) 276, 851
MaeII ACGT 1 cut(s) 562
MaeIII GTNAC 3 cut(s) 20, 349, 404
MalI GATC 6 cut(s) 129, 267, 392, 429, 450, 792
MboI GATC 6 cut(s) 127, 265, 390, 427, 448, 790
MboII GAAGA 3 cut(s) 212, 452, 709
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 7 cut(s) 136, 462, 579, 621, 649, 717, 844
MlyI GAGTC 2 cut(s) 686, 998
MnlI CCTC 5 cut(s) 463, 716, 739, 790, 898
MseI TTAA 3 cut(s) 311, 624, 687
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 3 cut(s) 88, 113, 377
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 1 cut(s) 44
MwoI GCNNNNNNNGC 8 cut(s) 276, 430, 641, 878, 887, 891, 896, 931
NdeI CATATG 2 cut(s) 322, 513
NdeII GATC 6 cut(s) 127, 265, 390, 427, 448, 790
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 6 cut(s) 31, 169, 502, 592, 885, 894
NlaIV GGNNCC 1 cut(s) 935
NmeAIII GCCGAG 1 cut(s) 251
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 2 cut(s) 885, 894
PaeI GCATGC 2 cut(s) 885, 894
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 279
PfoI TCCNGGA 1 cut(s) 42
PkrI GCNGC 4 cut(s) 90, 379, 532, 778
PleI GAGTC 2 cut(s) 685, 997
PpsI GAGTC 2 cut(s) 685, 997
Ppu21I YACGTR 1 cut(s) 563
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 1 cut(s) 821
PstI CTGCAG 1 cut(s) 93
PvuII CAGCTG 3 cut(s) 88, 113, 377
RsaI GTAC 4 cut(s) 108, 455, 671, 1019
RsaNI GTAC 4 cut(s) 107, 454, 670, 1018
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 3 cut(s) 311, 624, 687
SatI GCNGC 4 cut(s) 89, 378, 531, 777
Sau3AI GATC 6 cut(s) 127, 265, 390, 427, 448, 790
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 2 cut(s) 686, 998
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 1 cut(s) 156
SfaNI GCATC 2 cut(s) 763, 912
SfcI CTRYAG 3 cut(s) 89, 534, 658
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 2 cut(s) 885, 894
Sse9I AATT 7 cut(s) 136, 462, 579, 621, 649, 717, 844
SsiI CCGC 2 cut(s) 776, 1002
SspMI CTAG 2 cut(s) 276, 851
StyD4I CCNGG 1 cut(s) 42
StyI CCWWGG 2 cut(s) 736, 850
TaaI ACNGT 4 cut(s) 349, 596, 761, 956
TaiI ACGT 1 cut(s) 565
TaqI TCGA 1 cut(s) 344
TasI AATT 7 cut(s) 136, 462, 579, 621, 649, 717, 844
TatI WGTACW 3 cut(s) 453, 669, 1017
TauI GCSGC 1 cut(s) 779
Tru1I TTAA 3 cut(s) 311, 624, 687
Tru9I TTAA 3 cut(s) 311, 624, 687
TscAI CASTG 1 cut(s) 766
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 88, 377, 530
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 63, 273, 515, 605, 1010
TspRI CASTG 1 cut(s) 766
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 885, 894
XmaJI CCTAGG 1 cut(s) 850
XspI CTAG 2 cut(s) 276, 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.