MD16G1096200.v1.1

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0012297
Physical Location & Seq
Forward (+)
6687484 .. 6691599
4116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1096200.v1.1.491

Sequence Viewer

Length: 1029 bp
ATGTTGGGAGGCAACAGTGGTAACCCCATGCTTCCTGTTTTCGTGGATGAAAATCGTTACCCATATCCGACAAATGCTTCAAGTCAACTACAGCTGTTTGGAAATGTACAAGCTGGATGTAACGTTGATCCTGTAAATTATTTTGGAACTGAGCATATTACTCCCATGCTTCGGCCTAATAAACGAAACAGGGAAATGGAAGATATCTCAAGACAGCAGAAGCTTCAGATTTCTTTGAACTATAATGTCTGTCCTGATGAAGCTGATCGTTCAGCTAGCATTCCAAACCCAAACGCTGTATCAACGGGGTTAAGGCTATCATATGATGACGATGAGCGCAACTCATCAGTTACTTCTGCAAGTGGAAGTATGACAGCAGCACCTTCAATGATCCTATCCCTGGGTGACAATATTAGGACTGAGCTGGACCGACAGAAGGAAGAGTTTGATCAATACATCAAAATTCAGGAGGAACACTTGGCAAAGGGAGTTCGGGACATGAAGCAGAGACATATGTCTTCCTTCCTTGCTGCCATAGAGAAAGGTGTCAGCAAAAAGATGATCGAGAAAGACTTGGAAATTGAGAACATGAACCGGAAGAATCGAGAATTGGTGGATAGAATAAAACAGGTGGCTGTGGAAGCCCAAAACTGGCACTACAGGGCGAAGTACAATGAGTCCGTGGTAAATGTCCTGAAGAGCGACTTACAGCAAGCAATTTCACAGGGTGCCGATCAAGGGAAGGAAGGATTTGGAGACAGCGAAGTTGACGATGCTGCCTCGTACATCGATCCAAATAACTACCTGACTATCCCAGCTGGACCAGCGAAAACCGTGTCGAAGAATTACCTTGGGTTGAAGGAGCAAACGGGTTCGAGAACGTGCAGAGCATGCAAAGCCAAGGAGGTGTCGACCTTGTTGATGCCATGTAGGCATCTGTGTTTATGTAAGGACTGTGATGGGTTTGTCAATGTTTGCCCTGTTTGTGAGTCAATGAAAACTGCTAGCTTCCAAGTGTACTTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

343

Amino Acids

38.2

Weight (kDa)

5.85

Isoelectric Point (pI)

45.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 293 - 332 5.4e-10 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 728
AccI GTMKAC 1 cut(s) 911
AclI AACGTT 1 cut(s) 123
AclWI GGATC 3 cut(s) 122, 385, 785
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 2 cut(s) 209, 716
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 4 cut(s) 108, 671, 785, 1019
AfiI CCNNNNNNNGG 5 cut(s) 171, 400, 436, 651, 738
AgsI TTSAA 4 cut(s) 81, 238, 387, 859
AjnI CCWGG 1 cut(s) 399
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 8 cut(s) 94, 113, 223, 263, 275, 424, 818, 1008
AluI AGCT 8 cut(s) 94, 113, 223, 263, 275, 424, 818, 1008
Alw26I GTCTC 2 cut(s) 502, 750
AlwI GGATC 3 cut(s) 122, 385, 785
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 377, 530, 776
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 821, 853
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 2 cut(s) 427, 821
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 2 cut(s) 275, 1004
AvaII GGWCC 2 cut(s) 427, 821
BanI GGYRCC 1 cut(s) 728
BbsI GAAGAC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 389, 517, 763
BccI CCATC 1 cut(s) 953
BciT130I CCWGG 1 cut(s) 401
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 2 cut(s) 502, 750
BfaI CTAG 2 cut(s) 276, 1005
BfmI CTRYAG 2 cut(s) 89, 658
BglI GCCNNNNNGGC 1 cut(s) 931
BisI GCNGC 3 cut(s) 378, 531, 777
BlsI GCNGC 3 cut(s) 379, 532, 778
Bme1390I CCNGG 1 cut(s) 401
Bme18I GGWCC 2 cut(s) 427, 821
BmgT120I GGNCC 2 cut(s) 427, 821
BmiI GGNNCC 1 cut(s) 730
BmrFI CCNGG 1 cut(s) 401
BmsI GCATC 3 cut(s) 763, 912, 943
BmtI GCTAGC 2 cut(s) 279, 1008
BoxI GACNNNNGTC 1 cut(s) 514
BpiI GAAGAC 1 cut(s) 510
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 789
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 5 cut(s) 399, 400, 681, 850, 900
BsaWI WCCGGW 1 cut(s) 594
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 400, 436, 651, 738
Bse1I ACTGG 1 cut(s) 656
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 1 cut(s) 401
BseCI ATCGAT 1 cut(s) 789
BseDI CCNNGG 5 cut(s) 399, 400, 681, 850, 900
BseGI GGATG 2 cut(s) 52, 122
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 171, 400, 436, 651, 738
BseMII CTCAG 2 cut(s) 141, 411
BseNI ACTGG 1 cut(s) 656
BseXI GCAGC 3 cut(s) 389, 517, 763
BseYI CCCAGC 1 cut(s) 814
BsgI GTGCAG 1 cut(s) 904
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 728
BshVI ATCGAT 1 cut(s) 789
BsiSI CCGG 1 cut(s) 595
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 5 cut(s) 171, 400, 436, 651, 738
BsmAI GTCTC 2 cut(s) 502, 750
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 142, 412
BspDI ATCGAT 1 cut(s) 789
BspLI GGNNCC 1 cut(s) 730
BspOI GCTAGC 2 cut(s) 279, 1008
BspPI GGATC 3 cut(s) 122, 385, 785
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 728
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 656
BssECI CCNNGG 5 cut(s) 399, 400, 681, 850, 900
BssMI GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
BssT1I CCWWGG 2 cut(s) 850, 900
Bst2UI CCWGG 1 cut(s) 401
Bst4CI ACNGT 3 cut(s) 17, 835, 956
Bst6I CTCTTC 2 cut(s) 435, 692
BstAPI GCANNNNNTGC 1 cut(s) 891
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 277, 714, 892, 1006
BstDEI CTNAG 2 cut(s) 150, 420
BstDSI CCRYGG 1 cut(s) 681
BstEII GGTNACC 1 cut(s) 20
BstF5I GGATG 2 cut(s) 52, 122
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 7 cut(s) 130, 268, 393, 451, 564, 736, 793
BstMAI GTCTC 2 cut(s) 502, 750
BstMBI GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
BstMWI GCNNNNNNNGC 5 cut(s) 641, 824, 891, 896, 931
BstNI CCWGG 1 cut(s) 401
BstNSI RCATGY 1 cut(s) 894
BstPAI GACNNNNGTC 1 cut(s) 514
BstPI GGTNACC 1 cut(s) 20
BstSCI CCNGG 1 cut(s) 399
BstSFI CTRYAG 2 cut(s) 89, 658
BstV1I GCAGC 3 cut(s) 389, 517, 763
BstV2I GAAGAC 1 cut(s) 510
Bsu15I ATCGAT 1 cut(s) 789
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 1 cut(s) 789
BtgI CCRYGG 1 cut(s) 681
BtsCI GGATG 2 cut(s) 52, 122
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 4 cut(s) 277, 714, 892, 1006
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 2 cut(s) 427, 821
ClaI ATCGAT 1 cut(s) 789
Csp6I GTAC 4 cut(s) 107, 670, 784, 1018
CviAII CATG 6 cut(s) 28, 166, 499, 589, 891, 927
CviQI GTAC 4 cut(s) 107, 670, 784, 1018
DdeI CTNAG 2 cut(s) 150, 420
DpnI GATC 7 cut(s) 129, 267, 392, 450, 563, 735, 792
DpnII GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
DraIII CACNNNGTG 1 cut(s) 728
Eam1104I CTCTTC 2 cut(s) 435, 692
EarI CTCTTC 2 cut(s) 435, 692
Eco130I CCWWGG 2 cut(s) 850, 900
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 427, 821
Eco57I CTGAAG 2 cut(s) 209, 716
Eco91I GGTNACC 1 cut(s) 20
EcoO65I GGTNACC 1 cut(s) 20
EcoRII CCWGG 1 cut(s) 399
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 2 cut(s) 850, 900
ErhI CCWWGG 2 cut(s) 850, 900
FaeI CATG 6 cut(s) 31, 169, 502, 592, 894, 930
FalI AAGNNNNNCTT 2 cut(s) 689, 721
FaqI GGGAC 1 cut(s) 509
FatI CATG 6 cut(s) 27, 165, 498, 588, 890, 926
FauNDI CATATG 2 cut(s) 322, 513
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 911
Fnu4HI GCNGC 3 cut(s) 378, 531, 777
FokI GGATG 2 cut(s) 59, 129
Fsp4HI GCNGC 3 cut(s) 378, 531, 777
FspBI CTAG 2 cut(s) 276, 1005
GlaI GCGC 1 cut(s) 338
GluI GCNGC 3 cut(s) 378, 531, 777
GsaI CCCAGC 1 cut(s) 818
HaeIII GGCC 1 cut(s) 175
HapII CCGG 1 cut(s) 595
HhaI GCGC 1 cut(s) 339
Hin1II CATG 6 cut(s) 31, 169, 502, 592, 894, 930
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HincII GTYRAC 3 cut(s) 86, 769, 912
HindII GTYRAC 3 cut(s) 86, 769, 912
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 601, 677, 989
HpaII CCGG 1 cut(s) 595
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 4 cut(s) 86, 769, 912, 1018
Hpy188I TCNGA 2 cut(s) 69, 228
Hpy188III TCNNGA 8 cut(s) 210, 254, 467, 494, 565, 605, 694, 876
Hpy8I GTNNAC 4 cut(s) 86, 769, 912, 1018
HpyAV CCTTC 6 cut(s) 393, 430, 532, 736, 740, 853
HpyCH4III ACNGT 3 cut(s) 17, 835, 956
HpyCH4IV ACGT 2 cut(s) 123, 881
HpyCH4V TGCA 3 cut(s) 359, 885, 894
HpyF10VI GCNNNNNNNGC 5 cut(s) 641, 824, 891, 896, 931
HpyF3I CTNAG 2 cut(s) 150, 420
HpySE526I ACGT 2 cut(s) 123, 881
Hsp92II CATG 6 cut(s) 31, 169, 502, 592, 894, 930
HspAI GCGC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 389, 517, 763
LweI GCATC 3 cut(s) 763, 912, 943
MaeI CTAG 2 cut(s) 276, 1005
MaeII ACGT 2 cut(s) 123, 881
MaeIII GTNAC 5 cut(s) 20, 56, 119, 349, 404
MalI GATC 7 cut(s) 129, 267, 392, 450, 563, 735, 792
MboI GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
MboII GAAGA 6 cut(s) 212, 452, 510, 610, 709, 853
MluCI AATT 6 cut(s) 136, 462, 579, 608, 717, 844
MlyI GAGTC 2 cut(s) 686, 998
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 3 cut(s) 463, 790, 898
MseI TTAA 1 cut(s) 311
MspA1I CMGCKG 2 cut(s) 94, 818
MspI CCGG 1 cut(s) 595
MspR9I CCNGG 1 cut(s) 401
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 1 cut(s) 401
MwoI GCNNNNNNNGC 5 cut(s) 641, 824, 891, 896, 931
NdeI CATATG 2 cut(s) 322, 513
NdeII GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
NheI GCTAGC 2 cut(s) 275, 1004
NlaIII CATG 6 cut(s) 31, 169, 502, 592, 894, 930
NlaIV GGNNCC 1 cut(s) 730
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 1 cut(s) 894
PaeI GCATGC 1 cut(s) 894
PasI CCCWGGG 1 cut(s) 400
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 3 cut(s) 379, 532, 778
PleI GAGTC 2 cut(s) 685, 997
PpsI GAGTC 2 cut(s) 685, 997
PshAI GACNNNNGTC 1 cut(s) 514
Psp1406I AACGTT 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 399
PspEI GGTNACC 1 cut(s) 20
PspFI CCCAGC 1 cut(s) 814
PspGI CCWGG 1 cut(s) 399
PspN4I GGNNCC 1 cut(s) 730
PspPI GGNCC 2 cut(s) 427, 821
PvuII CAGCTG 2 cut(s) 94, 818
RsaI GTAC 4 cut(s) 108, 671, 785, 1019
RsaNI GTAC 4 cut(s) 107, 670, 784, 1018
SalI GTCGAC 1 cut(s) 910
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 3 cut(s) 378, 531, 777
Sau3AI GATC 7 cut(s) 127, 265, 390, 448, 561, 733, 790
Sau96I GGNCC 2 cut(s) 427, 821
SchI GAGTC 2 cut(s) 686, 998
ScrFI CCNGG 1 cut(s) 401
SfaNI GCATC 3 cut(s) 763, 912, 943
SfcI CTRYAG 2 cut(s) 89, 658
SinI GGWCC 2 cut(s) 427, 821
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 1 cut(s) 894
Sse9I AATT 6 cut(s) 136, 462, 579, 608, 717, 844
SspI AATATT 1 cut(s) 412
SspMI CTAG 2 cut(s) 276, 1005
StyD4I CCNGG 1 cut(s) 399
StyI CCWWGG 2 cut(s) 850, 900
TaaI ACNGT 3 cut(s) 17, 835, 956
TaiI ACGT 2 cut(s) 126, 884
TaqI TCGA 6 cut(s) 564, 604, 789, 839, 875, 911
TaqII GACCGA 1 cut(s) 444
TasI AATT 6 cut(s) 136, 462, 579, 608, 717, 844
TatI WGTACW 3 cut(s) 106, 669, 1017
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 1 cut(s) 22
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 377, 530, 776
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 5 cut(s) 63, 273, 515, 605, 1010
TspGWI ACGGA 1 cut(s) 670
TspRI CASTG 1 cut(s) 22
VpaK11BI GGWCC 2 cut(s) 427, 821
XapI RAATTY 1 cut(s) 462
XceI RCATGY 1 cut(s) 894
XmiI GTMKAC 1 cut(s) 911
XspI CTAG 2 cut(s) 276, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.