pycom13g08290

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012297
Physical Location & Seq
Forward (+)
5499538 .. 5501159
1622 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g08290.3

Sequence Viewer

Length: 1029 bp
ATGTTGGGAGGCAACAATAGTAACCCCATGCTTCCTGTTTTCGTGGATGAAAATCGATTCCCATATCCGACAAATGCTTCAAGTCAACTTCAGCTGTTTGGAAATGTACAAGCTGGATGTAACGTTGATCCTGTAAATTATTTTGGCACTGAGCATATCACTCCCATGCTTCGGCCCAATAAACGAAACAGGGAAATGGAAGATGTCTCAAGACAGAAGAAGCTTCAGATTTCTTTGAACTATAATGTCTGTCCAGATGAAGCCGATCGTTCAGCTAGCATTCCAAACCCAAATGCTGTATCAACGGGGTTAAGGCTATCATATGATGACGATGAGCGCAACTCATCAGTTACTTCTGCGAGTGGAAGTATGACAGCAGCACCTTCAATGATCCTATCCCTAGGTGACAATATTAGGACTGAGCTGGATCGACAGAAGGAAGAGTTTGATCAATACATCAAAATTCAGGAGGAACACTTGGCAAAGGGGGTAAGGGACATGAAGCAGAGACAAATGGCTTCTTTCCTTGCTGCCATAGAGAAAGGCGTCAGCAAAAAGATGCGCGAGAAAGACTTGGAAATTGAGAACGTGAACCGTAAGAATCAAGAATTGGTTGATAGAATAAAACAGGTGGCTGTCGAAGCGCAAAATTGGCACTACAGAGCAAAGTACAATGAGGCGGTTGTTAATGCCCTGAAGAGCAACCTCCAGCATGCAATTTCGCAGGGTGCTGACCAAGGGAAGGAAGGATTTGGAGACAGCGAAGTTGACGATGCTGCCTCCTACATCGATCCAAATAACTACCTGACTATCCCAGTTGGACCAGCGAAATCTGTGCCGAAGAATTACCTAGGGTTGAAGGAGCAAACGGGTTCGAGAGCGTGTAGAGCATGCAAAGCGAAGGAGGTGTCGATCTTGTTGATGCCTTGTAGGCACCTGTGTTTATGCAAGGACTGTGATGGTTTTGTCAATGTTTGCCCTGTATGTGAGTCAATGAAAACTGCTAGCTTCCAAGTGTACTTGTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

343

Amino Acids

38.15

Weight (kDa)

6.27

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 933
AccII CGCG 1 cut(s) 564
AciI CCGC 1 cut(s) 680
AclI AACGTT 1 cut(s) 123
AclWI GGATC 4 cut(s) 122, 385, 435, 785
AcsI RAATTY 1 cut(s) 462
AcuI CTGAAG 3 cut(s) 74, 209, 716
AcyI GRCGYC 1 cut(s) 546
AfaI GTAC 3 cut(s) 108, 671, 1019
AfiI CCNNNNNNNGG 2 cut(s) 171, 742
AgsI TTSAA 4 cut(s) 81, 238, 387, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 6 cut(s) 94, 113, 223, 275, 424, 1008
AluI AGCT 6 cut(s) 94, 113, 223, 275, 424, 1008
Alw26I GTCTC 3 cut(s) 211, 502, 750
AlwI GGATC 4 cut(s) 122, 385, 435, 785
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 3 cut(s) 377, 530, 776
ApoI RAATTY 1 cut(s) 462
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspA2I CCTAGG 2 cut(s) 400, 850
AspLEI GCGC 3 cut(s) 339, 564, 646
AspS9I GGNCC 2 cut(s) 174, 821
AsuHPI GGTGA 1 cut(s) 416
AsuNHI GCTAGC 2 cut(s) 275, 1004
AvaII GGWCC 1 cut(s) 821
AvrII CCTAGG 2 cut(s) 400, 850
BanI GGYRCC 1 cut(s) 933
BbvI GCAGC 3 cut(s) 389, 517, 763
BccI CCATC 1 cut(s) 953
BcgI CGANNNNNNTGC 2 cut(s) 817, 851
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 3 cut(s) 211, 502, 750
BfaI CTAG 4 cut(s) 276, 401, 851, 1005
BfmI CTRYAG 1 cut(s) 658
BglI GCCNNNNNGGC 1 cut(s) 931
BisI GCNGC 3 cut(s) 378, 531, 777
BlnI CCTAGG 2 cut(s) 400, 850
BlsI GCNGC 3 cut(s) 379, 532, 778
Bme18I GGWCC 1 cut(s) 821
BmgT120I GGNCC 2 cut(s) 174, 821
BmiI GGNNCC 1 cut(s) 935
BmrI ACTGGG 1 cut(s) 809
BmsI GCATC 3 cut(s) 549, 763, 912
BmtI GCTAGC 2 cut(s) 279, 1008
BmuI ACTGGG 1 cut(s) 809
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 2 cut(s) 55, 789
BsaBI GATNNNNATC 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 546
BsaJI CCNNGG 3 cut(s) 400, 736, 850
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 742
Bse1I ACTGG 1 cut(s) 815
Bse8I GATNNNNATC 1 cut(s) 51
BseCI ATCGAT 2 cut(s) 55, 789
BseDI CCNNGG 3 cut(s) 400, 736, 850
BseGI GGATG 2 cut(s) 52, 122
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 2 cut(s) 171, 742
BseMII CTCAG 2 cut(s) 141, 411
BseNI ACTGG 1 cut(s) 815
BseXI GCAGC 3 cut(s) 389, 517, 763
Bsh1236I CGCG 1 cut(s) 564
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 933
BshVI ATCGAT 2 cut(s) 55, 789
BsiEI CGRYCG 1 cut(s) 268
BslFI GGGAC 1 cut(s) 509
BslI CCNNNNNNNGG 2 cut(s) 171, 742
BsmAI GTCTC 3 cut(s) 211, 502, 750
BsmFI GGGAC 1 cut(s) 509
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 106
Bsp143I GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
BspACI CCGC 1 cut(s) 680
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 142, 412
BspDI ATCGAT 2 cut(s) 55, 789
BspFNI CGCG 1 cut(s) 564
BspLI GGNNCC 1 cut(s) 935
BspOI GCTAGC 2 cut(s) 279, 1008
BspPI GGATC 4 cut(s) 122, 385, 435, 785
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 933
BsrGI TGTACA 1 cut(s) 106
BsrI ACTGG 1 cut(s) 815
BssECI CCNNGG 3 cut(s) 400, 736, 850
BssMI GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
BssNI GRCGYC 1 cut(s) 546
BssT1I CCWWGG 3 cut(s) 400, 736, 850
Bst4CI ACNGT 2 cut(s) 596, 956
Bst6I CTCTTC 2 cut(s) 435, 692
BstACI GRCGYC 1 cut(s) 546
BstAUI TGTACA 1 cut(s) 106
BstC8I GCNNGC 4 cut(s) 277, 714, 892, 1006
BstDEI CTNAG 2 cut(s) 150, 420
BstF5I GGATG 2 cut(s) 52, 122
BstFNI CGCG 1 cut(s) 564
BstHHI GCGC 3 cut(s) 339, 564, 646
BstKTI GATC 7 cut(s) 130, 268, 393, 430, 451, 793, 915
BstMAI GTCTC 3 cut(s) 211, 502, 750
BstMBI GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
BstMCI CGRYCG 1 cut(s) 268
BstMWI GCNNNNNNNGC 5 cut(s) 641, 652, 887, 896, 931
BstNSI RCATGY 2 cut(s) 716, 894
BstSFI CTRYAG 1 cut(s) 658
BstUI CGCG 1 cut(s) 564
BstV1I GCAGC 3 cut(s) 389, 517, 763
Bsu15I ATCGAT 2 cut(s) 55, 789
BsuRI GGCC 1 cut(s) 175
BsuTUI ATCGAT 2 cut(s) 55, 789
BtsCI GGATG 2 cut(s) 52, 122
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 4 cut(s) 277, 714, 892, 1006
CfoI GCGC 3 cut(s) 339, 564, 646
Cfr13I GGNCC 2 cut(s) 174, 821
ClaI ATCGAT 2 cut(s) 55, 789
CseI GACGC 1 cut(s) 535
Csp6I GTAC 3 cut(s) 107, 670, 1018
CviAII CATG 5 cut(s) 28, 166, 499, 713, 891
CviQI GTAC 3 cut(s) 107, 670, 1018
DdeI CTNAG 2 cut(s) 150, 420
DpnI GATC 7 cut(s) 129, 267, 392, 429, 450, 792, 914
DpnII GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
Eam1104I CTCTTC 2 cut(s) 435, 692
EarI CTCTTC 2 cut(s) 435, 692
Eco130I CCWWGG 3 cut(s) 400, 736, 850
Eco47I GGWCC 1 cut(s) 821
Eco57I CTGAAG 3 cut(s) 74, 209, 716
EcoT14I CCWWGG 3 cut(s) 400, 736, 850
ErhI CCWWGG 3 cut(s) 400, 736, 850
FaeI CATG 5 cut(s) 31, 169, 502, 716, 894
FaqI GGGAC 1 cut(s) 509
FatI CATG 5 cut(s) 27, 165, 498, 712, 890
FauNDI CATATG 1 cut(s) 322
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 3 cut(s) 378, 531, 777
FokI GGATG 2 cut(s) 59, 129
Fsp4HI GCNGC 3 cut(s) 378, 531, 777
FspBI CTAG 4 cut(s) 276, 401, 851, 1005
GlaI GCGC 3 cut(s) 338, 563, 645
GluI GCNGC 3 cut(s) 378, 531, 777
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 1 cut(s) 175
HgaI GACGC 1 cut(s) 535
HhaI GCGC 3 cut(s) 339, 564, 646
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 5 cut(s) 31, 169, 502, 716, 894
Hin6I GCGC 3 cut(s) 337, 562, 644
HinP1I GCGC 3 cut(s) 337, 562, 644
HincII GTYRAC 2 cut(s) 86, 769
HindII GTYRAC 2 cut(s) 86, 769
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 57, 601, 989
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 4 cut(s) 86, 592, 769, 1018
Hpy188I TCNGA 2 cut(s) 69, 228
Hpy188III TCNNGA 5 cut(s) 210, 254, 467, 605, 876
Hpy8I GTNNAC 4 cut(s) 86, 592, 769, 1018
HpyAV CCTTC 6 cut(s) 393, 430, 736, 740, 853, 895
HpyCH4III ACNGT 2 cut(s) 596, 956
HpyCH4IV ACGT 2 cut(s) 123, 588
HpyCH4V TGCA 3 cut(s) 716, 894, 948
HpyF10VI GCNNNNNNNGC 5 cut(s) 641, 652, 887, 896, 931
HpyF3I CTNAG 2 cut(s) 150, 420
HpySE526I ACGT 2 cut(s) 123, 588
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 5 cut(s) 31, 169, 502, 716, 894
HspAI GCGC 3 cut(s) 337, 562, 644
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 389, 517, 763
LweI GCATC 3 cut(s) 549, 763, 912
MaeI CTAG 4 cut(s) 276, 401, 851, 1005
MaeII ACGT 2 cut(s) 123, 588
MaeIII GTNAC 4 cut(s) 20, 119, 349, 404
MalI GATC 7 cut(s) 129, 267, 392, 429, 450, 792, 914
MboI GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
MboII GAAGA 5 cut(s) 212, 229, 452, 709, 853
MluCI AATT 7 cut(s) 136, 462, 579, 608, 649, 717, 844
MlyI GAGTC 1 cut(s) 998
MmeI TCCRAC 2 cut(s) 92, 799
MnlI CCTC 5 cut(s) 463, 670, 716, 790, 898
MseI TTAA 2 cut(s) 311, 687
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 279
MvnI CGCG 1 cut(s) 564
MwoI GCNNNNNNNGC 5 cut(s) 641, 652, 887, 896, 931
NdeI CATATG 1 cut(s) 322
NdeII GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
NheI GCTAGC 2 cut(s) 275, 1004
NlaIII CATG 5 cut(s) 31, 169, 502, 716, 894
NlaIV GGNNCC 1 cut(s) 935
NmuCI GTSAC 1 cut(s) 404
NspI RCATGY 2 cut(s) 716, 894
PaeI GCATGC 2 cut(s) 716, 894
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 57, 601
PkrI GCNGC 3 cut(s) 379, 532, 778
Ple19I CGATCG 1 cut(s) 268
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
Psp1406I AACGTT 1 cut(s) 123
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 2 cut(s) 174, 821
PvuI CGATCG 1 cut(s) 268
PvuII CAGCTG 1 cut(s) 94
RsaI GTAC 3 cut(s) 108, 671, 1019
RsaNI GTAC 3 cut(s) 107, 670, 1018
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 2 cut(s) 311, 687
SatI GCNGC 3 cut(s) 378, 531, 777
Sau3AI GATC 7 cut(s) 127, 265, 390, 427, 448, 790, 912
Sau96I GGNCC 2 cut(s) 174, 821
SchI GAGTC 1 cut(s) 998
SfaNI GCATC 3 cut(s) 549, 763, 912
SfcI CTRYAG 1 cut(s) 658
SinI GGWCC 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 2 cut(s) 716, 894
Sse9I AATT 7 cut(s) 136, 462, 579, 608, 649, 717, 844
SsiI CCGC 1 cut(s) 680
SspI AATATT 1 cut(s) 412
SspMI CTAG 4 cut(s) 276, 401, 851, 1005
StyI CCWWGG 3 cut(s) 400, 736, 850
TaaI ACNGT 2 cut(s) 596, 956
TaiI ACGT 2 cut(s) 126, 591
TaqI TCGA 6 cut(s) 55, 430, 639, 789, 875, 911
TasI AATT 7 cut(s) 136, 462, 579, 608, 649, 717, 844
TatI WGTACW 3 cut(s) 106, 669, 1017
TfiI GAWTC 2 cut(s) 57, 601
Tru1I TTAA 2 cut(s) 311, 687
Tru9I TTAA 2 cut(s) 311, 687
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 404
TseI GCWGC 3 cut(s) 377, 530, 776
Tsp45I GTSAC 1 cut(s) 404
TspDTI ATGAA 4 cut(s) 63, 273, 515, 1010
TspRI CASTG 1 cut(s) 154
VpaK11BI GGWCC 1 cut(s) 821
XapI RAATTY 1 cut(s) 462
XceI RCATGY 2 cut(s) 716, 894
XmaJI CCTAGG 2 cut(s) 400, 850
XspI CTAG 4 cut(s) 276, 401, 851, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.