Rh4BG402800

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0012297
Physical Location & Seq
Forward (+)
55351973 .. 55356324
4352 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG402800.1

Sequence Viewer

Length: 1029 bp
ATGTTGGGAGGCAACAATGCTAATTCCATGCTACCTGTTTTCGTGGATGAAAATCGCTTCCCCTATCCAACAAATGCCACAAATCAGCTGCAGTTGTTTGGTAATGTACCAGCTGGATGTAATGTTGATCCTGTAAATTATTTTGGAACTGAGCATATCACTCCCATGCTTCGGCCTAATAAACGAACCAGGGAAATTGAAGATATCTCAAGACAGCAGAAGCTTCAAATTTCTTTGAACTACAATGTCTGTCAAGATGAAGCTGATCGCTCAGCTAGCATTCCAAACCCGAACCATGTATCGACAGGTTTAAGGCTATCGTATGATGATGATGAGCGCAACTCATCTGTTACATCTGCTAGTGGAAGCATGCCAGCAGCACCGTCAATGATTTTATCCCTAGGGGACAATATTAGGACTGAGCTTGATCGGCAGAAGGAAGAATTTGATCAGTACATCAAAATTCAGGAGGAACACTTGGCAAAGGGGGTAAGAGACATGAAGCAGAGACATATGGCTTCTTTCCTTACCGCTATAGAGAAAGGTGTAGGCAAAAAGCTAAGGGAGAAAGACTTGGAAATTGAGACCATGAACCGCAAGAACCGAGAATTGGTCGATAAAATAAGACAGGTAGCTGTCGAAGCCCAGAATTGGCATTACAGAGCAAAGTACAATGAGTCAGTTGTGAATGTGCTGAAGAGCAACCTCCAGCAAGCAATTTCACAGGGTGCTGACCTAGGGAAGGAGGGTTTTGGAGACAGTGAAGTTGATGACGCTGCCTCATACATTGATCCAACTAACTACCTGGCCATTCAAGGTGGGCCTGCAAAGTCCGTATCCAAAAATTACCTAGGGTTGAAGGAGCAAATGGATTGCAGAGCATGCAAAGCATGCCGAGCAAAGGAGGTGTCTATCTTGTTGATGCCTTGTAGGCACCTGTGTTTATGTAAGGACTGTGATGAGTTCATCAGTGTTTGCCCCGTATGCGAGTCAATGAAAACGGCTAGTTTCCAAGTATACTTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

5.95

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 293 - 332 1.1e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 933
AccI GTMKAC 1 cut(s) 1017
AciI CCGC 2 cut(s) 531, 595
AclWI GGATC 2 cut(s) 122, 785
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 3 cut(s) 228, 443, 462
AcuI CTGAAG 1 cut(s) 716
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 3 cut(s) 108, 455, 671
AfiI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
AgsI TTSAA 5 cut(s) 200, 227, 238, 815, 859
AjnI CCWGG 2 cut(s) 188, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 8 cut(s) 88, 113, 223, 263, 275, 424, 559, 635
AluI AGCT 8 cut(s) 88, 113, 223, 263, 275, 424, 559, 635
Alw26I GTCTC 4 cut(s) 489, 502, 578, 750
AlwI GGATC 2 cut(s) 122, 785
AoxI GGCC 3 cut(s) 173, 807, 821
ApeKI GCWGC 3 cut(s) 88, 377, 776
ApoI RAATTY 3 cut(s) 228, 443, 462
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspA2I CCTAGG 3 cut(s) 400, 736, 850
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 821
AsuNHI GCTAGC 1 cut(s) 275
AvrII CCTAGG 3 cut(s) 400, 736, 850
BalI TGGCCA 1 cut(s) 809
BanI GGYRCC 1 cut(s) 933
BbvI GCAGC 3 cut(s) 75, 389, 763
BceAI ACGGC 1 cut(s) 1017
BciT130I CCWGG 2 cut(s) 190, 806
BciVI GTATCC 1 cut(s) 847
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 4 cut(s) 489, 502, 578, 750
BfaI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
BfmI CTRYAG 2 cut(s) 89, 534
BfuI GTATCC 1 cut(s) 847
BglI GCCNNNNNGGC 1 cut(s) 931
BisI GCNGC 3 cut(s) 89, 378, 777
BlnI CCTAGG 3 cut(s) 400, 736, 850
BlpI GCTNAGC 1 cut(s) 271
BlsI GCNGC 3 cut(s) 90, 379, 778
Bme1390I CCNGG 2 cut(s) 190, 806
BmgT120I GGNCC 1 cut(s) 821
BmiI GGNNCC 1 cut(s) 935
BmrFI CCNGG 2 cut(s) 190, 806
BmsI GCATC 1 cut(s) 912
BmtI GCTAGC 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 560
Bpu1102I GCTNAGC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 193
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 4 cut(s) 189, 400, 736, 850
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 2 cut(s) 190, 806
BseDI CCNNGG 4 cut(s) 189, 400, 736, 850
BseGI GGATG 2 cut(s) 52, 122
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
BseMII CTCAG 3 cut(s) 141, 285, 411
BseXI GCAGC 3 cut(s) 75, 389, 763
BshFI GGCC 3 cut(s) 175, 809, 823
BshNI GGYRCC 1 cut(s) 933
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
BsmAI GTCTC 4 cut(s) 489, 502, 578, 750
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 3 cut(s) 175, 809, 823
Bso31I GGTCTC 1 cut(s) 578
Bsp143I GATC 5 cut(s) 127, 265, 427, 448, 790
Bsp1720I GCTNAGC 1 cut(s) 271
BspACI CCGC 2 cut(s) 531, 595
BspANI GGCC 3 cut(s) 175, 809, 823
BspCNI CTCAG 3 cut(s) 142, 284, 412
BspLI GGNNCC 1 cut(s) 935
BspMAI CTGCAG 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 122, 785
BspQI GCTCTTC 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 933
BspTNI GGTCTC 1 cut(s) 578
BssECI CCNNGG 4 cut(s) 189, 400, 736, 850
BssMI GATC 5 cut(s) 127, 265, 427, 448, 790
BssNAI GTATAC 1 cut(s) 1018
BssT1I CCWWGG 3 cut(s) 400, 736, 850
Bst1107I GTATAC 1 cut(s) 1018
Bst2UI CCWGG 2 cut(s) 190, 806
Bst4CI ACNGT 3 cut(s) 384, 761, 956
Bst6I CTCTTC 1 cut(s) 692
BstAPI GCANNNNNTGC 2 cut(s) 882, 891
BstC8I GCNNGC 7 cut(s) 277, 371, 375, 714, 825, 883, 892
BstDEI CTNAG 4 cut(s) 150, 271, 420, 560
BstENI CCTNNNNNAGG 1 cut(s) 740
BstF5I GGATG 2 cut(s) 52, 122
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 5 cut(s) 130, 268, 430, 451, 793
BstMAI GTCTC 4 cut(s) 489, 502, 578, 750
BstMBI GATC 5 cut(s) 127, 265, 427, 448, 790
BstMWI GCNNNNNNNGC 9 cut(s) 276, 430, 641, 882, 887, 891, 896, 931, 984
BstNI CCWGG 2 cut(s) 190, 806
BstNSI RCATGY 3 cut(s) 373, 885, 894
BstSCI CCNGG 2 cut(s) 188, 804
BstSFI CTRYAG 2 cut(s) 89, 534
BstV1I GCAGC 3 cut(s) 75, 389, 763
BstZ17I GTATAC 1 cut(s) 1018
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 3 cut(s) 175, 809, 823
BtsCI GGATG 2 cut(s) 52, 122
BtsIMutI CAGTG 2 cut(s) 766, 976
Cac8I GCNNGC 7 cut(s) 277, 371, 375, 714, 825, 883, 892
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 821
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 107, 454, 670
CviAII CATG 8 cut(s) 28, 166, 296, 370, 499, 589, 882, 891
CviQI GTAC 3 cut(s) 107, 454, 670
DdeI CTNAG 4 cut(s) 150, 271, 420, 560
DpnI GATC 5 cut(s) 129, 267, 429, 450, 792
DpnII GATC 5 cut(s) 127, 265, 427, 448, 790
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 3 cut(s) 400, 736, 850
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 716
EcoNI CCTNNNNNAGG 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 188, 804
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 400, 736, 850
ErhI CCWWGG 3 cut(s) 400, 736, 850
FaeI CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
FaqI GGGAC 1 cut(s) 419
FatI CATG 8 cut(s) 27, 165, 295, 369, 498, 588, 881, 890
FauNDI CATATG 1 cut(s) 513
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 1017
Fnu4HI GCNGC 3 cut(s) 89, 378, 777
FokI GGATG 2 cut(s) 59, 129
Fsp4HI GCNGC 3 cut(s) 89, 378, 777
FspBI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
GlaI GCGC 1 cut(s) 338
GluI GCNGC 3 cut(s) 89, 378, 777
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 3 cut(s) 175, 809, 823
HgaI GACGC 1 cut(s) 782
HhaI GCGC 1 cut(s) 339
Hin1II CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 677, 989
Hpy166II GTNNAC 1 cut(s) 1018
Hpy188III TCNNGA 3 cut(s) 210, 254, 467
Hpy8I GTNNAC 1 cut(s) 1018
HpyAV CCTTC 3 cut(s) 430, 736, 853
HpyCH4III ACNGT 3 cut(s) 384, 761, 956
HpyCH4V TGCA 4 cut(s) 91, 827, 876, 885
HpyF10VI GCNNNNNNNGC 9 cut(s) 276, 430, 641, 882, 887, 891, 896, 931, 984
HpyF3I CTNAG 4 cut(s) 150, 271, 420, 560
Hsp92II CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
HspAI GCGC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 127, 265, 427, 448, 790
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 75, 389, 763
LweI GCATC 1 cut(s) 912
MaeI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
MaeIII GTNAC 1 cut(s) 349
MalI GATC 5 cut(s) 129, 267, 429, 450, 792
MboI GATC 5 cut(s) 127, 265, 427, 448, 790
MboII GAAGA 3 cut(s) 212, 452, 709
MlsI TGGCCA 1 cut(s) 809
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 2 cut(s) 686, 998
MmeI TCCRAC 2 cut(s) 92, 818
MnlI CCTC 5 cut(s) 463, 716, 739, 790, 898
Mox20I TGGCCA 1 cut(s) 809
MscI TGGCCA 1 cut(s) 809
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 88, 113
MspR9I CCNGG 2 cut(s) 190, 806
Mva1269I GAATGC 1 cut(s) 279
MvaI CCWGG 2 cut(s) 190, 806
MwoI GCNNNNNNNGC 9 cut(s) 276, 430, 641, 882, 887, 891, 896, 931, 984
NdeI CATATG 1 cut(s) 513
NdeII GATC 5 cut(s) 127, 265, 427, 448, 790
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
NlaIV GGNNCC 1 cut(s) 935
NmeAIII GCCGAG 1 cut(s) 920
NspI RCATGY 3 cut(s) 373, 885, 894
PaeI GCATGC 3 cut(s) 373, 885, 894
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 1 cut(s) 279
PkrI GCNGC 3 cut(s) 90, 379, 778
PleI GAGTC 2 cut(s) 685, 997
PpsI GAGTC 2 cut(s) 685, 997
Psp6I CCWGG 2 cut(s) 188, 804
PspGI CCWGG 2 cut(s) 188, 804
PspN4I GGNNCC 1 cut(s) 935
PspPI GGNCC 1 cut(s) 821
PstI CTGCAG 1 cut(s) 93
PvuII CAGCTG 2 cut(s) 88, 113
RsaI GTAC 3 cut(s) 108, 455, 671
RsaNI GTAC 3 cut(s) 107, 454, 670
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 3 cut(s) 89, 378, 777
Sau3AI GATC 5 cut(s) 127, 265, 427, 448, 790
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 2 cut(s) 686, 998
ScrFI CCNGG 2 cut(s) 190, 806
SfaNI GCATC 1 cut(s) 912
SfcI CTRYAG 2 cut(s) 89, 534
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 3 cut(s) 373, 885, 894
SsiI CCGC 2 cut(s) 531, 595
SspI AATATT 1 cut(s) 412
SspMI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
StyD4I CCNGG 2 cut(s) 188, 804
StyI CCWWGG 3 cut(s) 400, 736, 850
TaaI ACNGT 3 cut(s) 384, 761, 956
TaqI TCGA 3 cut(s) 302, 615, 639
TatI WGTACW 2 cut(s) 453, 669
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 2 cut(s) 766, 976
TseI GCWGC 3 cut(s) 88, 377, 776
TspDTI ATGAA 6 cut(s) 63, 273, 515, 605, 955, 1010
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 2 cut(s) 766, 976
XagI CCTNNNNNAGG 1 cut(s) 740
XapI RAATTY 3 cut(s) 228, 443, 462
XceI RCATGY 3 cut(s) 373, 885, 894
XmaJI CCTAGG 3 cut(s) 400, 736, 850
XmiI GTMKAC 1 cut(s) 1017
XspI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.