Rh4DG395900

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0012297
Physical Location & Seq
Forward (+)
61249684 .. 61253754
4071 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG395900.1

Sequence Viewer

Length: 1038 bp
ATGTTGGTACTACACTGTAATCAAATTTTTATCTTTTCAGCATCAAAGTTGTCATTCCTAGAAAACTTATTAGTTGGGCTTGTGTCTAAGAAGAATGAGTTAATTCATGTTGCAGTACCAGCTGGATGTAATGTTGATCCTGTAAATTATTTTGGAACTGAGCATATCACTCCCATGCTTCGGCCTAATAAACGAACCAGGGAAATTGAAGATATCTCAAGACAGCAGAAGCTTCAAATTTCTTTGAACTACAATGTCTGTCAAGATGAAGCTGATCGCTCAGCTAGCATTCCAAACCCGAACCATGTATCGACAGGTTTAAGGCTATCATATGATGATGATGAGCGCAACTCGTCTGTTACATCTGCTAGTGGAAGCATGCCAGCAGCACCATCAATGATTTTATCCCTAGGGGACAATATTAGGACTGAGCTTGATCGGCAGAAGGAAGAATTTGATCAGTACATCAAAATTCAGGAGGAACACTTGGCAAAGGGGGTAAGAGACATGAAGCATAGACATATGGCTTCTTTCCTTACCGCTATAGAGAAAGGTGTAGGCAAAAAGCTAAGGGAGAAAGACTTGGAAATTGAGACCATGAACCGCAAGAACCGAGAATTGGTCGATAAAATAAGACAGGTAGCTGTCGAAGCCCAGAATTGGCATTACAGAGCCAAGTACAATGAGTCAGTTGTGAATGTGCTGAAGAGCAACCTCCAGCAAGCAATTTCACAGGGTGCTGACCTAGGGAAGGAGGGTTTTGGAGACAGTGAAGTTGATGACGCTGCCTCATACATTGATCCGACTAACTACCTGGCCGTTCAAGGTGGGCCTGCAAAGTCCGTATCCAAGAATTACCTAGGGTTGAAGGAGCAAATGGATTGCAGAGCATGCAAAGCATGCCGAGCAAAGGAGGTGTCTATCTTGTTGATGCCTTGTAGGCACCTGTGTTTATGTAAGGACTGTGATGAGTTCATCAGTGTTTGCCCCGTATGCGAGTCAATGAAAACGGCTAGTTTCCAAGTATACCTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

345

Amino Acids

38.75

Weight (kDa)

6.52

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 296 - 335 1.1e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 942
AccI GTMKAC 1 cut(s) 1026
AciI CCGC 2 cut(s) 540, 604
AclWI GGATC 2 cut(s) 131, 794
AcoI YGGCCR 1 cut(s) 816
AcsI RAATTY 4 cut(s) 24, 237, 452, 471
AcuI CTGAAG 1 cut(s) 725
AdeI CACNNNGTG 1 cut(s) 737
AfaI GTAC 4 cut(s) 9, 117, 464, 680
AfiI CCNNNNNNNGG 5 cut(s) 180, 619, 660, 751, 910
AgsI TTSAA 5 cut(s) 209, 236, 247, 824, 868
AjnI CCWGG 2 cut(s) 197, 813
AjuI GAANNNNNNNTTGG 2 cut(s) 602, 634
AluBI AGCT 7 cut(s) 122, 232, 272, 284, 433, 568, 644
AluI AGCT 7 cut(s) 122, 232, 272, 284, 433, 568, 644
Alw26I GTCTC 3 cut(s) 498, 587, 759
AlwI GGATC 2 cut(s) 131, 794
AoxI GGCC 3 cut(s) 182, 816, 830
ApeKI GCWGC 2 cut(s) 386, 785
ApoI RAATTY 4 cut(s) 24, 237, 452, 471
ArsI GACNNNNNNTTYG 2 cut(s) 902, 934
AspA2I CCTAGG 3 cut(s) 409, 745, 859
AspLEI GCGC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 830
AsuNHI GCTAGC 1 cut(s) 284
AvrII CCTAGG 3 cut(s) 409, 745, 859
BanI GGYRCC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 398, 772
BccI CCATC 1 cut(s) 400
BceAI ACGGC 2 cut(s) 803, 1026
BciT130I CCWGG 2 cut(s) 199, 815
BciVI GTATCC 1 cut(s) 856
BclI TGATCA 1 cut(s) 457
BcoDI GTCTC 3 cut(s) 498, 587, 759
BfaI CTAG 7 cut(s) 59, 285, 369, 410, 746, 860, 1014
BfmI CTRYAG 1 cut(s) 543
BfuI GTATCC 1 cut(s) 856
BglI GCCNNNNNGGC 1 cut(s) 940
BisI GCNGC 2 cut(s) 387, 786
BlnI CCTAGG 3 cut(s) 409, 745, 859
BlpI GCTNAGC 1 cut(s) 280
BlsI GCNGC 2 cut(s) 388, 787
Bme1390I CCNGG 2 cut(s) 199, 815
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 1 cut(s) 944
BmrFI CCNGG 2 cut(s) 199, 815
BmsI GCATC 2 cut(s) 50, 921
BmtI GCTAGC 1 cut(s) 288
BplI GAGNNNNNCTC 2 cut(s) 335, 367
BpmI CTGGAG 1 cut(s) 701
Bpu10I CCTNAGC 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 280
BpuEI CTTGAG 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 4 cut(s) 198, 409, 745, 859
Bsc4I CCNNNNNNNGG 5 cut(s) 180, 619, 660, 751, 910
BseBI CCWGG 2 cut(s) 199, 815
BseDI CCNNGG 4 cut(s) 198, 409, 745, 859
BseGI GGATG 1 cut(s) 131
BseLI CCNNNNNNNGG 5 cut(s) 180, 619, 660, 751, 910
BseMII CTCAG 3 cut(s) 150, 294, 420
BseXI GCAGC 2 cut(s) 398, 772
BshFI GGCC 3 cut(s) 184, 818, 832
BshNI GGYRCC 1 cut(s) 942
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 5 cut(s) 180, 619, 660, 751, 910
BsmAI GTCTC 3 cut(s) 498, 587, 759
BsmFI GGGAC 1 cut(s) 428
BsmI GAATGC 1 cut(s) 288
BsnI GGCC 3 cut(s) 184, 818, 832
Bso31I GGTCTC 1 cut(s) 587
Bsp143I GATC 5 cut(s) 136, 274, 436, 457, 799
Bsp1720I GCTNAGC 1 cut(s) 280
BspACI CCGC 2 cut(s) 540, 604
BspANI GGCC 3 cut(s) 184, 818, 832
BspCNI CTCAG 3 cut(s) 151, 293, 421
BspLI GGNNCC 1 cut(s) 944
BspOI GCTAGC 1 cut(s) 288
BspPI GGATC 2 cut(s) 131, 794
BspQI GCTCTTC 1 cut(s) 701
BspT107I GGYRCC 1 cut(s) 942
BspTNI GGTCTC 1 cut(s) 587
BssECI CCNNGG 4 cut(s) 198, 409, 745, 859
BssMI GATC 5 cut(s) 136, 274, 436, 457, 799
BssNAI GTATAC 1 cut(s) 1027
BssT1I CCWWGG 3 cut(s) 409, 745, 859
Bst1107I GTATAC 1 cut(s) 1027
Bst2UI CCWGG 2 cut(s) 199, 815
Bst4CI ACNGT 3 cut(s) 17, 770, 965
Bst6I CTCTTC 1 cut(s) 701
BstAPI GCANNNNNTGC 2 cut(s) 891, 900
BstC8I GCNNGC 7 cut(s) 286, 380, 384, 723, 834, 892, 901
BstDEI CTNAG 5 cut(s) 87, 159, 280, 429, 569
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 1 cut(s) 131
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 5 cut(s) 139, 277, 439, 460, 802
BstMAI GTCTC 3 cut(s) 498, 587, 759
BstMBI GATC 5 cut(s) 136, 274, 436, 457, 799
BstNI CCWGG 2 cut(s) 199, 815
BstNSI RCATGY 3 cut(s) 382, 894, 903
BstSCI CCNGG 2 cut(s) 197, 813
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 398, 772
BstZ17I GTATAC 1 cut(s) 1027
BsuI GTATCC 1 cut(s) 856
BsuRI GGCC 3 cut(s) 184, 818, 832
BtsCI GGATG 1 cut(s) 131
BtsIMutI CAGTG 3 cut(s) 13, 775, 985
Cac8I GCNNGC 7 cut(s) 286, 380, 384, 723, 834, 892, 901
CfoI GCGC 1 cut(s) 348
Cfr13I GGNCC 1 cut(s) 830
CseI GACGC 1 cut(s) 791
Csp6I GTAC 4 cut(s) 8, 116, 463, 679
CviAII CATG 8 cut(s) 107, 175, 305, 379, 508, 598, 891, 900
CviQI GTAC 4 cut(s) 8, 116, 463, 679
DdeI CTNAG 5 cut(s) 87, 159, 280, 429, 569
DpnI GATC 5 cut(s) 138, 276, 438, 459, 801
DpnII GATC 5 cut(s) 136, 274, 436, 457, 799
DraIII CACNNNGTG 1 cut(s) 737
EaeI YGGCCR 1 cut(s) 816
Eam1104I CTCTTC 1 cut(s) 701
EarI CTCTTC 1 cut(s) 701
Eco130I CCWWGG 3 cut(s) 409, 745, 859
Eco31I GGTCTC 1 cut(s) 587
Eco32I GATATC 1 cut(s) 214
Eco57I CTGAAG 1 cut(s) 725
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoRII CCWGG 2 cut(s) 197, 813
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 3 cut(s) 409, 745, 859
ErhI CCWWGG 3 cut(s) 409, 745, 859
FaeI CATG 8 cut(s) 110, 178, 308, 382, 511, 601, 894, 903
FaqI GGGAC 1 cut(s) 428
FatI CATG 8 cut(s) 106, 174, 304, 378, 507, 597, 890, 899
FauNDI CATATG 2 cut(s) 331, 522
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 1 cut(s) 1026
Fnu4HI GCNGC 2 cut(s) 387, 786
FokI GGATG 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 387, 786
FspBI CTAG 7 cut(s) 59, 285, 369, 410, 746, 860, 1014
GlaI GCGC 1 cut(s) 347
GluI GCNGC 2 cut(s) 387, 786
GsuI CTGGAG 1 cut(s) 701
HaeIII GGCC 3 cut(s) 184, 818, 832
HgaI GACGC 1 cut(s) 791
HhaI GCGC 1 cut(s) 348
Hin1II CATG 8 cut(s) 110, 178, 308, 382, 511, 601, 894, 903
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 230
HinfI GANTC 2 cut(s) 686, 998
Hpy166II GTNNAC 1 cut(s) 1027
Hpy188I TCNGA 1 cut(s) 804
Hpy188III TCNNGA 3 cut(s) 219, 263, 476
Hpy8I GTNNAC 1 cut(s) 1027
HpyAV CCTTC 3 cut(s) 439, 745, 862
HpyCH4III ACNGT 3 cut(s) 17, 770, 965
HpyCH4V TGCA 4 cut(s) 113, 836, 885, 894
HpyF3I CTNAG 5 cut(s) 87, 159, 280, 429, 569
Hsp92II CATG 8 cut(s) 110, 178, 308, 382, 511, 601, 894, 903
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 136, 274, 436, 457, 799
LguI GCTCTTC 1 cut(s) 701
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 2 cut(s) 398, 772
LweI GCATC 2 cut(s) 50, 921
MaeI CTAG 7 cut(s) 59, 285, 369, 410, 746, 860, 1014
MaeIII GTNAC 1 cut(s) 358
MalI GATC 5 cut(s) 138, 276, 438, 459, 801
MboI GATC 5 cut(s) 136, 274, 436, 457, 799
MboII GAAGA 4 cut(s) 103, 221, 461, 718
MlyI GAGTC 2 cut(s) 695, 1007
MmeI TCCRAC 1 cut(s) 827
MnlI CCTC 5 cut(s) 472, 725, 748, 799, 907
MseI TTAA 2 cut(s) 101, 320
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 122
MspR9I CCNGG 2 cut(s) 199, 815
Mva1269I GAATGC 1 cut(s) 288
MvaI CCWGG 2 cut(s) 199, 815
NdeI CATATG 2 cut(s) 331, 522
NdeII GATC 5 cut(s) 136, 274, 436, 457, 799
NheI GCTAGC 1 cut(s) 284
NlaIII CATG 8 cut(s) 110, 178, 308, 382, 511, 601, 894, 903
NlaIV GGNNCC 1 cut(s) 944
NmeAIII GCCGAG 1 cut(s) 929
NspI RCATGY 3 cut(s) 382, 894, 903
PaeI GCATGC 3 cut(s) 382, 894, 903
PciSI GCTCTTC 1 cut(s) 701
PctI GAATGC 1 cut(s) 288
PkrI GCNGC 2 cut(s) 388, 787
PleI GAGTC 2 cut(s) 694, 1006
PpsI GAGTC 2 cut(s) 694, 1006
Psp6I CCWGG 2 cut(s) 197, 813
PspGI CCWGG 2 cut(s) 197, 813
PspN4I GGNNCC 1 cut(s) 944
PspPI GGNCC 1 cut(s) 830
PvuII CAGCTG 1 cut(s) 122
RsaI GTAC 4 cut(s) 9, 117, 464, 680
RsaNI GTAC 4 cut(s) 8, 116, 463, 679
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 701
SaqAI TTAA 2 cut(s) 101, 320
SatI GCNGC 2 cut(s) 387, 786
Sau3AI GATC 5 cut(s) 136, 274, 436, 457, 799
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 2 cut(s) 695, 1007
ScrFI CCNGG 2 cut(s) 199, 815
SfaNI GCATC 2 cut(s) 50, 921
SfcI CTRYAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SphI GCATGC 3 cut(s) 382, 894, 903
SsiI CCGC 2 cut(s) 540, 604
SspI AATATT 1 cut(s) 421
SspMI CTAG 7 cut(s) 59, 285, 369, 410, 746, 860, 1014
StyD4I CCNGG 2 cut(s) 197, 813
StyI CCWWGG 3 cut(s) 409, 745, 859
TaaI ACNGT 3 cut(s) 17, 770, 965
TaqI TCGA 3 cut(s) 311, 624, 648
TatI WGTACW 2 cut(s) 462, 678
Tru1I TTAA 2 cut(s) 101, 320
Tru9I TTAA 2 cut(s) 101, 320
TscAI CASTG 3 cut(s) 20, 775, 985
TseI GCWGC 2 cut(s) 386, 785
TspDTI ATGAA 6 cut(s) 95, 282, 524, 614, 964, 1019
TspGWI ACGGA 1 cut(s) 832
TspRI CASTG 3 cut(s) 20, 775, 985
XagI CCTNNNNNAGG 1 cut(s) 749
XapI RAATTY 4 cut(s) 24, 237, 452, 471
XceI RCATGY 3 cut(s) 382, 894, 903
XmaJI CCTAGG 3 cut(s) 409, 745, 859
XmiI GTMKAC 1 cut(s) 1026
XspI CTAG 7 cut(s) 59, 285, 369, 410, 746, 860, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.