Rmu_sc0002501.1_g000024

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002501.1
OG0012297
Physical Location & Seq
Reverse (-)
123329 .. 125031
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002501.1_g000024.1.cds

Sequence Viewer

Length: 1029 bp
atgttggggggcaacaatgctaattccatgctacctgttttcgtggatgaaaatcgcttcccctatccagcgaatgccacaaatcagctgcaattgtttggtaatgtaccagctggatgtaatgttgatcctgtaaattattttggaactgagcatatcactcccatgcttcggcctaataaacgaaccagggaaattgaagatatctcaagacagcagaagcttcaaatttctttgaactacaatgtctgtcaagatgaagctgatcgatcagctagcattccaaacccgaaccatgtatcaacaggtttaaggctatcatatgatgatgatgagcgcaactcgtctgttacatccgctagtggaagcatgccagcagcaccgtcaatgattttatccctaggggacaatattaggactgagcttgatcggcagaaggaagaatttgatcagtacatcaaaattcaggaggaacacttggcaaagggggtaagagacatgaagcagagacatatggcttctttccttaccgctatagagaaaggtgtaggcaaaaagctaagggagaaagacttggaaattgagaccatgaaccgcaagaaccgagaattggtcgatagaataagacaggtagctgtcgaagcccagaattggcattacagagccaagtacaatgagtcagttgtgaatgtgctgaagagcaacctccagcaagcaatttcacagggtgctgacctagggaaggaaggttttggagacagtgaagttgatgacgctgcctcatacattgatccgactaactacctggccattcaaggtgggcctgcaaagtccgtatccaagaattacctagggttgaaggagcaaatggattgcagagcatgcaaagcatgccgagcaaaggaggtgtctatcttgttgatgccttgtagacacctgtgtttatgtaaggactgtgatgagttcatcagtgtttgccccgtatgcgagtcaatgaaaacggctagtttccaagtatacctgtcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

342

Amino Acids

38.37

Weight (kDa)

5.95

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 931, 1017
AciI CCGC 3 cut(s) 357, 531, 595
AclWI GGATC 2 cut(s) 122, 785
AcoI YGGCCR 1 cut(s) 807
AcsI RAATTY 3 cut(s) 228, 443, 462
AcuI CTGAAG 1 cut(s) 716
AdeI CACNNNGTG 1 cut(s) 728
AfaI GTAC 3 cut(s) 108, 455, 671
AfiI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
AgsI TTSAA 5 cut(s) 200, 227, 238, 815, 859
AjnI CCWGG 2 cut(s) 188, 804
AjuI GAANNNNNNNTTGG 2 cut(s) 593, 625
AluBI AGCT 8 cut(s) 88, 113, 223, 263, 275, 424, 559, 635
AluI AGCT 8 cut(s) 88, 113, 223, 263, 275, 424, 559, 635
Alw26I GTCTC 4 cut(s) 489, 502, 578, 750
AlwI GGATC 2 cut(s) 122, 785
AoxI GGCC 3 cut(s) 173, 807, 821
ApeKI GCWGC 3 cut(s) 88, 377, 776
ApoI RAATTY 3 cut(s) 228, 443, 462
ArsI GACNNNNNNTTYG 2 cut(s) 893, 925
AspA2I CCTAGG 3 cut(s) 400, 736, 850
AspLEI GCGC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 821
AsuNHI GCTAGC 1 cut(s) 275
AvrII CCTAGG 3 cut(s) 400, 736, 850
BalI TGGCCA 1 cut(s) 809
BbvI GCAGC 3 cut(s) 75, 389, 763
BceAI ACGGC 1 cut(s) 1017
BciT130I CCWGG 2 cut(s) 190, 806
BciVI GTATCC 1 cut(s) 847
BclI TGATCA 1 cut(s) 448
BcoDI GTCTC 4 cut(s) 489, 502, 578, 750
BfaI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
BfmI CTRYAG 1 cut(s) 534
BfuI GTATCC 1 cut(s) 847
BisI GCNGC 3 cut(s) 89, 378, 777
BlnI CCTAGG 3 cut(s) 400, 736, 850
BlsI GCNGC 3 cut(s) 90, 379, 778
Bme1390I CCNGG 2 cut(s) 190, 806
BmgT120I GGNCC 1 cut(s) 821
BmrFI CCNGG 2 cut(s) 190, 806
BmsI GCATC 1 cut(s) 912
BmtI GCTAGC 1 cut(s) 279
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpmI CTGGAG 1 cut(s) 692
Bpu10I CCTNAGC 1 cut(s) 560
BpuEI CTTGAG 1 cut(s) 193
Bsa29I ATCGAT 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 4 cut(s) 189, 400, 736, 850
Bsc4I CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
Bse8I GATNNNNATC 1 cut(s) 51
BseBI CCWGG 2 cut(s) 190, 806
BseCI ATCGAT 1 cut(s) 268
BseDI CCNNGG 4 cut(s) 189, 400, 736, 850
BseGI GGATG 3 cut(s) 52, 122, 353
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
BseMII CTCAG 2 cut(s) 141, 411
BseXI GCAGC 3 cut(s) 75, 389, 763
BshFI GGCC 3 cut(s) 175, 809, 823
BshVI ATCGAT 1 cut(s) 268
BslFI GGGAC 1 cut(s) 419
BslI CCNNNNNNNGG 5 cut(s) 171, 610, 651, 742, 901
BsmAI GTCTC 4 cut(s) 489, 502, 578, 750
BsmFI GGGAC 1 cut(s) 419
BsmI GAATGC 2 cut(s) 79, 279
BsnI GGCC 3 cut(s) 175, 809, 823
Bso31I GGTCTC 1 cut(s) 578
Bsp143I GATC 6 cut(s) 127, 265, 269, 427, 448, 790
BspACI CCGC 3 cut(s) 357, 531, 595
BspANI GGCC 3 cut(s) 175, 809, 823
BspCNI CTCAG 2 cut(s) 142, 412
BspDI ATCGAT 1 cut(s) 268
BspOI GCTAGC 1 cut(s) 279
BspPI GGATC 2 cut(s) 122, 785
BspQI GCTCTTC 1 cut(s) 692
BspTNI GGTCTC 1 cut(s) 578
BssECI CCNNGG 4 cut(s) 189, 400, 736, 850
BssMI GATC 6 cut(s) 127, 265, 269, 427, 448, 790
BssNAI GTATAC 1 cut(s) 1018
BssT1I CCWWGG 3 cut(s) 400, 736, 850
Bst1107I GTATAC 1 cut(s) 1018
Bst2UI CCWGG 2 cut(s) 190, 806
Bst4CI ACNGT 3 cut(s) 384, 761, 956
Bst6I CTCTTC 1 cut(s) 692
BstAPI GCANNNNNTGC 2 cut(s) 882, 891
BstC8I GCNNGC 7 cut(s) 277, 371, 375, 714, 825, 883, 892
BstDEI CTNAG 3 cut(s) 150, 420, 560
BstENI CCTNNNNNAGG 1 cut(s) 740
BstF5I GGATG 3 cut(s) 52, 122, 353
BstHHI GCGC 1 cut(s) 339
BstKTI GATC 6 cut(s) 130, 268, 272, 430, 451, 793
BstMAI GTCTC 4 cut(s) 489, 502, 578, 750
BstMBI GATC 6 cut(s) 127, 265, 269, 427, 448, 790
BstMWI GCNNNNNNNGC 7 cut(s) 430, 641, 882, 887, 891, 896, 984
BstNI CCWGG 2 cut(s) 190, 806
BstNSI RCATGY 3 cut(s) 373, 885, 894
BstSCI CCNGG 2 cut(s) 188, 804
BstSFI CTRYAG 1 cut(s) 534
BstV1I GCAGC 3 cut(s) 75, 389, 763
BstZ17I GTATAC 1 cut(s) 1018
Bsu15I ATCGAT 1 cut(s) 268
BsuI GTATCC 1 cut(s) 847
BsuRI GGCC 3 cut(s) 175, 809, 823
BsuTUI ATCGAT 1 cut(s) 268
BtsCI GGATG 3 cut(s) 52, 122, 353
BtsIMutI CAGTG 2 cut(s) 766, 976
Cac8I GCNNGC 7 cut(s) 277, 371, 375, 714, 825, 883, 892
CfoI GCGC 1 cut(s) 339
Cfr13I GGNCC 1 cut(s) 821
ClaI ATCGAT 1 cut(s) 268
CseI GACGC 1 cut(s) 782
Csp6I GTAC 3 cut(s) 107, 454, 670
CviAII CATG 8 cut(s) 28, 166, 296, 370, 499, 589, 882, 891
CviQI GTAC 3 cut(s) 107, 454, 670
DdeI CTNAG 3 cut(s) 150, 420, 560
DpnI GATC 6 cut(s) 129, 267, 271, 429, 450, 792
DpnII GATC 6 cut(s) 127, 265, 269, 427, 448, 790
DraIII CACNNNGTG 1 cut(s) 728
EaeI YGGCCR 1 cut(s) 807
Eam1104I CTCTTC 1 cut(s) 692
EarI CTCTTC 1 cut(s) 692
Eco130I CCWWGG 3 cut(s) 400, 736, 850
Eco31I GGTCTC 1 cut(s) 578
Eco32I GATATC 1 cut(s) 205
Eco57I CTGAAG 1 cut(s) 716
EcoNI CCTNNNNNAGG 1 cut(s) 740
EcoRII CCWGG 2 cut(s) 188, 804
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 3 cut(s) 400, 736, 850
ErhI CCWWGG 3 cut(s) 400, 736, 850
FaeI CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
FaqI GGGAC 1 cut(s) 419
FatI CATG 8 cut(s) 27, 165, 295, 369, 498, 588, 881, 890
FauNDI CATATG 2 cut(s) 322, 513
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 931, 1017
Fnu4HI GCNGC 3 cut(s) 89, 378, 777
FokI GGATG 3 cut(s) 59, 129, 340
Fsp4HI GCNGC 3 cut(s) 89, 378, 777
FspBI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
GlaI GCGC 1 cut(s) 338
GluI GCNGC 3 cut(s) 89, 378, 777
GsuI CTGGAG 1 cut(s) 692
HaeIII GGCC 3 cut(s) 175, 809, 823
HgaI GACGC 1 cut(s) 782
HhaI GCGC 1 cut(s) 339
Hin1II CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
Hin6I GCGC 1 cut(s) 337
HinP1I GCGC 1 cut(s) 337
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 677, 989
Hpy166II GTNNAC 2 cut(s) 932, 1018
Hpy188I TCNGA 1 cut(s) 795
Hpy188III TCNNGA 3 cut(s) 210, 254, 467
Hpy8I GTNNAC 2 cut(s) 932, 1018
HpyAV CCTTC 4 cut(s) 430, 736, 740, 853
HpyCH4III ACNGT 3 cut(s) 384, 761, 956
HpyCH4V TGCA 4 cut(s) 91, 827, 876, 885
HpyF10VI GCNNNNNNNGC 7 cut(s) 430, 641, 882, 887, 891, 896, 984
HpyF3I CTNAG 3 cut(s) 150, 420, 560
Hsp92II CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
HspAI GCGC 1 cut(s) 337
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 6 cut(s) 127, 265, 269, 427, 448, 790
LguI GCTCTTC 1 cut(s) 692
LmnI GCTCC 1 cut(s) 862
Lsp1109I GCAGC 3 cut(s) 75, 389, 763
LweI GCATC 1 cut(s) 912
MaeI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
MaeIII GTNAC 1 cut(s) 349
MalI GATC 6 cut(s) 129, 267, 271, 429, 450, 792
MboI GATC 6 cut(s) 127, 265, 269, 427, 448, 790
MboII GAAGA 3 cut(s) 212, 452, 709
MfeI CAATTG 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 809
MluNI TGGCCA 1 cut(s) 809
MlyI GAGTC 2 cut(s) 686, 998
MmeI TCCRAC 1 cut(s) 818
MnlI CCTC 4 cut(s) 463, 716, 790, 898
Mox20I TGGCCA 1 cut(s) 809
MscI TGGCCA 1 cut(s) 809
MseI TTAA 1 cut(s) 311
MslI CAYNNNNRTG 1 cut(s) 164
Msp20I TGGCCA 1 cut(s) 809
MspA1I CMGCKG 2 cut(s) 88, 113
MspR9I CCNGG 2 cut(s) 190, 806
MunI CAATTG 1 cut(s) 92
Mva1269I GAATGC 2 cut(s) 79, 279
MvaI CCWGG 2 cut(s) 190, 806
MwoI GCNNNNNNNGC 7 cut(s) 430, 641, 882, 887, 891, 896, 984
NdeI CATATG 2 cut(s) 322, 513
NdeII GATC 6 cut(s) 127, 265, 269, 427, 448, 790
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 8 cut(s) 31, 169, 299, 373, 502, 592, 885, 894
NmeAIII GCCGAG 1 cut(s) 920
NspI RCATGY 3 cut(s) 373, 885, 894
PaeI GCATGC 3 cut(s) 373, 885, 894
PciSI GCTCTTC 1 cut(s) 692
PctI GAATGC 2 cut(s) 79, 279
PkrI GCNGC 3 cut(s) 90, 379, 778
PleI GAGTC 2 cut(s) 685, 997
PpsI GAGTC 2 cut(s) 685, 997
Psp6I CCWGG 2 cut(s) 188, 804
PspGI CCWGG 2 cut(s) 188, 804
PspPI GGNCC 1 cut(s) 821
PvuII CAGCTG 2 cut(s) 88, 113
RsaI GTAC 3 cut(s) 108, 455, 671
RsaNI GTAC 3 cut(s) 107, 454, 670
RseI CAYNNNNRTG 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 311
SatI GCNGC 3 cut(s) 89, 378, 777
Sau3AI GATC 6 cut(s) 127, 265, 269, 427, 448, 790
Sau96I GGNCC 1 cut(s) 821
SchI GAGTC 2 cut(s) 686, 998
ScrFI CCNGG 2 cut(s) 190, 806
SfaNI GCATC 1 cut(s) 912
SfcI CTRYAG 1 cut(s) 534
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 208
SmoI CTYRAG 1 cut(s) 208
SphI GCATGC 3 cut(s) 373, 885, 894
SsiI CCGC 3 cut(s) 357, 531, 595
SspI AATATT 1 cut(s) 412
SspMI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
StyD4I CCNGG 2 cut(s) 188, 804
StyI CCWWGG 3 cut(s) 400, 736, 850
TaaI ACNGT 3 cut(s) 384, 761, 956
TaqI TCGA 3 cut(s) 268, 615, 639
TatI WGTACW 2 cut(s) 453, 669
Tru1I TTAA 1 cut(s) 311
Tru9I TTAA 1 cut(s) 311
TscAI CASTG 2 cut(s) 766, 976
TseI GCWGC 3 cut(s) 88, 377, 776
TspDTI ATGAA 6 cut(s) 63, 273, 515, 605, 955, 1010
TspGWI ACGGA 1 cut(s) 823
TspRI CASTG 2 cut(s) 766, 976
XagI CCTNNNNNAGG 1 cut(s) 740
XapI RAATTY 3 cut(s) 228, 443, 462
XceI RCATGY 3 cut(s) 373, 885, 894
XmaJI CCTAGG 3 cut(s) 400, 736, 850
XmiI GTMKAC 2 cut(s) 931, 1017
XspI CTAG 6 cut(s) 276, 360, 401, 737, 851, 1005
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.