Rroxscaffold_5G00382840

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0012297
Physical Location & Seq
Forward (+)
62600949 .. 62605755
4807 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00382840.1

Sequence Viewer

Length: 1221 bp
ATGGATGTTGTGCTTCGCCACGAGGAAAAAGCTTGTTTCTTTGGGTTTTCTGGGTCTGATTTGAGTTGGCGTGGGATTGCAGGATCTGTATTAGCTCCTCGAAACTCAATCGGAGGGGTTTGGGATATTGAGATTAACTTTTCATATAAGATGTTGGGGGGCAACAATGCTAATTCCATGCTACCTGTTTTCGTGGATGAAAATCACTTCCCCTATCCAACGAATGCCACAAATCAGCTGCAATTGTTTGGTAATGTTGGGCTTGTGTCTAAGAAGAATGAGTTAATTCATGTTGCAGTACCAGCTGGATGTAACGTTGATCCTGTAAATTATTTTGGAACTGAGCATATCACTCCCATGCTTCGGCCTAATAAACGAACCAGGGAGATTGAAGATATCTCAAGACAGCAGAAGCTTCAAATTTCTTTGAACTACAATGTCTGTCAAGATGAAGCTGATCGCTCAGCTAGCATTCCAAACCCGAACCATGTATCGACAGGTTTAAGGCTATCGTATGATGATGATGAGCGCAACTCATCTGTTACATCTGCTAGTGGAAGCATGCCAGCAGCACCGTCAATGATTTTATCCCTAGGGGACAATATTAGGACTGAGCTTGATCGGCAGAAGGAAGAATTTGATCAGTACATCAAAATTCAGGAGGAACACTTGGCAAAGGGGGTAAGAGACATGAAGCAGAGACATATGGCTTCTTTCCTTACCGCTATAGAGAAAGGTGTAGGCAAAAAGCTAAGGGAGAAAGACCTAGAAATTGAGACCATGAACCGCAAGAACCGAGAATTGGTCGATAGAATAAGACAGGTAGCTGTCGAAGCCCAGAATTGGCATTACAGAGCAAAGTACAATGAGTCAGTTGTGAATGTGCTGAAGAGCAACCTCCAGCAAGCAATTTCACAGGGTGCTGACCTAGGGAAGGAGGGTTTTGGAGACAGTGAAGTTGATGACGCTGCCTCATACATTGATCCGACTAACTACCTGGCCATTCAAGGTGGGCCTGCAAAGTCCGTATCCAAGAATTACCTAGGGTTGAAGGAGCAAATGGATTGCAGAGCATGCAAAGCATGCCGAGTAAAGGAGGTGTCTATCTTGTTGATGCCTTGTAGGCACCTGTGTTTATGTAAGGACTGTGATGAGTTCATCAGTGTTTGCCCCGTATGCGAGTCAATGAAAACGGCTAGTTTCCAAGTATACTTGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

406

Amino Acids

45.44

Weight (kDa)

6.04

Isoelectric Point (pI)

46.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 357 - 396 2.9e-08 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1125
AccI GTMKAC 1 cut(s) 1209
AciI CCGC 2 cut(s) 723, 787
AclI AACGTT 1 cut(s) 315
AclWI GGATC 3 cut(s) 91, 314, 977
AcoI YGGCCR 1 cut(s) 999
AcsI RAATTY 3 cut(s) 420, 635, 654
AcuI CTGAAG 1 cut(s) 908
AdeI CACNNNGTG 1 cut(s) 920
AfaI GTAC 3 cut(s) 300, 647, 863
AfiI CCNNNNNNNGG 5 cut(s) 363, 802, 843, 934, 1093
AgsI TTSAA 5 cut(s) 392, 419, 430, 1007, 1051
AjnI CCWGG 2 cut(s) 380, 996
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
Alw26I GTCTC 4 cut(s) 681, 694, 770, 942
AlwI GGATC 3 cut(s) 91, 314, 977
AlwNI CAGNNNCTG 1 cut(s) 86
AoxI GGCC 3 cut(s) 365, 999, 1013
ApeKI GCWGC 3 cut(s) 238, 569, 968
ApoI RAATTY 3 cut(s) 420, 635, 654
AspA2I CCTAGG 3 cut(s) 592, 928, 1042
AspLEI GCGC 1 cut(s) 531
AspS9I GGNCC 1 cut(s) 1013
AsuNHI GCTAGC 1 cut(s) 467
AvrII CCTAGG 3 cut(s) 592, 928, 1042
BalI TGGCCA 1 cut(s) 1001
BanI GGYRCC 1 cut(s) 1125
BauI CACGAG 1 cut(s) 20
BbvI GCAGC 3 cut(s) 225, 581, 955
BceAI ACGGC 1 cut(s) 1209
BciT130I CCWGG 2 cut(s) 382, 998
BciVI GTATCC 1 cut(s) 1039
BclI TGATCA 1 cut(s) 640
BcoDI GTCTC 4 cut(s) 681, 694, 770, 942
BfaI CTAG 7 cut(s) 468, 552, 593, 767, 929, 1043, 1197
BfmI CTRYAG 1 cut(s) 726
BfuI GTATCC 1 cut(s) 1039
BglI GCCNNNNNGGC 1 cut(s) 1123
BisI GCNGC 3 cut(s) 239, 570, 969
BlnI CCTAGG 3 cut(s) 592, 928, 1042
BlpI GCTNAGC 1 cut(s) 463
BlsI GCNGC 3 cut(s) 240, 571, 970
Bme1390I CCNGG 2 cut(s) 382, 998
BmgT120I GGNCC 1 cut(s) 1013
BmiI GGNNCC 1 cut(s) 1127
BmrFI CCNGG 2 cut(s) 382, 998
BmsI GCATC 1 cut(s) 1104
BmtI GCTAGC 1 cut(s) 471
BplI GAGNNNNNCTC 2 cut(s) 518, 550
BpmI CTGGAG 1 cut(s) 884
Bpu10I CCTNAGC 1 cut(s) 752
Bpu1102I GCTNAGC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 385
BsaBI GATNNNNATC 1 cut(s) 201
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 4 cut(s) 381, 592, 928, 1042
Bsc4I CCNNNNNNNGG 5 cut(s) 363, 802, 843, 934, 1093
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 382, 998
BseDI CCNNGG 4 cut(s) 381, 592, 928, 1042
BseGI GGATG 3 cut(s) 10, 202, 314
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 5 cut(s) 363, 802, 843, 934, 1093
BseMII CTCAG 3 cut(s) 333, 477, 603
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 225, 581, 955
BshFI GGCC 3 cut(s) 367, 1001, 1015
BshNI GGYRCC 1 cut(s) 1125
BslFI GGGAC 1 cut(s) 611
BslI CCNNNNNNNGG 5 cut(s) 363, 802, 843, 934, 1093
BsmAI GTCTC 4 cut(s) 681, 694, 770, 942
BsmFI GGGAC 1 cut(s) 611
BsmI GAATGC 2 cut(s) 229, 471
BsnI GGCC 3 cut(s) 367, 1001, 1015
Bso31I GGTCTC 1 cut(s) 770
Bsp143I GATC 6 cut(s) 83, 319, 457, 619, 640, 982
Bsp1720I GCTNAGC 1 cut(s) 463
BspACI CCGC 2 cut(s) 723, 787
BspANI GGCC 3 cut(s) 367, 1001, 1015
BspCNI CTCAG 3 cut(s) 334, 476, 604
BspLI GGNNCC 1 cut(s) 1127
BspOI GCTAGC 1 cut(s) 471
BspPI GGATC 3 cut(s) 91, 314, 977
BspQI GCTCTTC 1 cut(s) 884
BspT107I GGYRCC 1 cut(s) 1125
BspTNI GGTCTC 1 cut(s) 770
BssECI CCNNGG 4 cut(s) 381, 592, 928, 1042
BssMI GATC 6 cut(s) 83, 319, 457, 619, 640, 982
BssNAI GTATAC 1 cut(s) 1210
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 3 cut(s) 592, 928, 1042
Bst1107I GTATAC 1 cut(s) 1210
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 382, 998
Bst4CI ACNGT 3 cut(s) 576, 953, 1148
Bst6I CTCTTC 1 cut(s) 884
BstAPI GCANNNNNTGC 2 cut(s) 1074, 1083
BstC8I GCNNGC 7 cut(s) 469, 563, 567, 906, 1017, 1075, 1084
BstDEI CTNAG 5 cut(s) 270, 342, 463, 612, 752
BstENI CCTNNNNNAGG 1 cut(s) 932
BstF5I GGATG 3 cut(s) 10, 202, 314
BstHHI GCGC 1 cut(s) 531
BstKTI GATC 6 cut(s) 86, 322, 460, 622, 643, 985
BstMAI GTCTC 4 cut(s) 681, 694, 770, 942
BstMBI GATC 6 cut(s) 83, 319, 457, 619, 640, 982
BstMWI GCNNNNNNNGC 9 cut(s) 302, 468, 622, 833, 1074, 1079, 1083, 1123, 1176
BstNI CCWGG 2 cut(s) 382, 998
BstNSI RCATGY 3 cut(s) 565, 1077, 1086
BstSCI CCNGG 2 cut(s) 380, 996
BstSFI CTRYAG 1 cut(s) 726
BstV1I GCAGC 3 cut(s) 225, 581, 955
BstX2I RGATCY 1 cut(s) 83
BstYI RGATCY 1 cut(s) 83
BstZ17I GTATAC 1 cut(s) 1210
BsuI GTATCC 1 cut(s) 1039
BsuRI GGCC 3 cut(s) 367, 1001, 1015
BtsCI GGATG 3 cut(s) 10, 202, 314
BtsIMutI CAGTG 2 cut(s) 958, 1168
Cac8I GCNNGC 7 cut(s) 469, 563, 567, 906, 1017, 1075, 1084
CaiI CAGNNNCTG 1 cut(s) 86
CfoI GCGC 1 cut(s) 531
Cfr13I GGNCC 1 cut(s) 1013
CseI GACGC 1 cut(s) 974
Csp6I GTAC 3 cut(s) 299, 646, 862
CviAII CATG 9 cut(s) 178, 290, 358, 488, 562, 691, 781, 1074, 1083
CviQI GTAC 3 cut(s) 299, 646, 862
DdeI CTNAG 5 cut(s) 270, 342, 463, 612, 752
DpnI GATC 6 cut(s) 85, 321, 459, 621, 642, 984
DpnII GATC 6 cut(s) 83, 319, 457, 619, 640, 982
DraIII CACNNNGTG 1 cut(s) 920
EaeI YGGCCR 1 cut(s) 999
Eam1104I CTCTTC 1 cut(s) 884
EarI CTCTTC 1 cut(s) 884
Eco130I CCWWGG 3 cut(s) 592, 928, 1042
Eco31I GGTCTC 1 cut(s) 770
Eco32I GATATC 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 908
EcoNI CCTNNNNNAGG 1 cut(s) 932
EcoRII CCWGG 2 cut(s) 380, 996
EcoRV GATATC 1 cut(s) 397
EcoT14I CCWWGG 3 cut(s) 592, 928, 1042
ErhI CCWWGG 3 cut(s) 592, 928, 1042
FaeI CATG 9 cut(s) 181, 293, 361, 491, 565, 694, 784, 1077, 1086
FaqI GGGAC 1 cut(s) 611
FatI CATG 9 cut(s) 177, 289, 357, 487, 561, 690, 780, 1073, 1082
FauNDI CATATG 1 cut(s) 705
FbaI TGATCA 1 cut(s) 640
FblI GTMKAC 1 cut(s) 1209
Fnu4HI GCNGC 3 cut(s) 239, 570, 969
FokI GGATG 3 cut(s) 17, 209, 321
Fsp4HI GCNGC 3 cut(s) 239, 570, 969
FspBI CTAG 7 cut(s) 468, 552, 593, 767, 929, 1043, 1197
GlaI GCGC 1 cut(s) 530
GluI GCNGC 3 cut(s) 239, 570, 969
GsuI CTGGAG 1 cut(s) 884
HaeIII GGCC 3 cut(s) 367, 1001, 1015
HgaI GACGC 1 cut(s) 974
HhaI GCGC 1 cut(s) 531
Hin1II CATG 9 cut(s) 181, 293, 361, 491, 565, 694, 784, 1077, 1086
Hin6I GCGC 1 cut(s) 529
HinP1I GCGC 1 cut(s) 529
HindIII AAGCTT 2 cut(s) 30, 413
HinfI GANTC 2 cut(s) 869, 1181
Hpy166II GTNNAC 1 cut(s) 1210
Hpy188I TCNGA 3 cut(s) 58, 113, 987
Hpy188III TCNNGA 3 cut(s) 402, 446, 659
Hpy8I GTNNAC 1 cut(s) 1210
HpyAV CCTTC 3 cut(s) 622, 928, 1045
HpyCH4III ACNGT 3 cut(s) 576, 953, 1148
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 6 cut(s) 80, 241, 296, 1019, 1068, 1077
HpyF10VI GCNNNNNNNGC 9 cut(s) 302, 468, 622, 833, 1074, 1079, 1083, 1123, 1176
HpyF3I CTNAG 5 cut(s) 270, 342, 463, 612, 752
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 9 cut(s) 181, 293, 361, 491, 565, 694, 784, 1077, 1086
HspAI GCGC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 6 cut(s) 83, 319, 457, 619, 640, 982
LguI GCTCTTC 1 cut(s) 884
LmnI GCTCC 2 cut(s) 100, 1054
Lsp1109I GCAGC 3 cut(s) 225, 581, 955
LweI GCATC 1 cut(s) 1104
MaeI CTAG 7 cut(s) 468, 552, 593, 767, 929, 1043, 1197
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 311, 541
MalI GATC 6 cut(s) 85, 321, 459, 621, 642, 984
MboI GATC 6 cut(s) 83, 319, 457, 619, 640, 982
MboII GAAGA 4 cut(s) 286, 404, 644, 901
MfeI CAATTG 1 cut(s) 242
MflI RGATCY 1 cut(s) 83
MlsI TGGCCA 1 cut(s) 1001
MluNI TGGCCA 1 cut(s) 1001
MlyI GAGTC 2 cut(s) 878, 1190
MmeI TCCRAC 2 cut(s) 242, 1010
MnlI CCTC 8 cut(s) 16, 107, 108, 655, 908, 931, 982, 1090
Mox20I TGGCCA 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 1001
MseI TTAA 3 cut(s) 135, 284, 503
MslI CAYNNNNRTG 1 cut(s) 356
Msp20I TGGCCA 1 cut(s) 1001
MspA1I CMGCKG 2 cut(s) 238, 305
MspR9I CCNGG 2 cut(s) 382, 998
MunI CAATTG 1 cut(s) 242
Mva1269I GAATGC 2 cut(s) 229, 471
MvaI CCWGG 2 cut(s) 382, 998
MwoI GCNNNNNNNGC 9 cut(s) 302, 468, 622, 833, 1074, 1079, 1083, 1123, 1176
NdeI CATATG 1 cut(s) 705
NdeII GATC 6 cut(s) 83, 319, 457, 619, 640, 982
NheI GCTAGC 1 cut(s) 467
NlaIII CATG 9 cut(s) 181, 293, 361, 491, 565, 694, 784, 1077, 1086
NlaIV GGNNCC 1 cut(s) 1127
NmeAIII GCCGAG 1 cut(s) 1112
NspI RCATGY 3 cut(s) 565, 1077, 1086
PaeI GCATGC 3 cut(s) 565, 1077, 1086
PciSI GCTCTTC 1 cut(s) 884
PctI GAATGC 2 cut(s) 229, 471
PkrI GCNGC 3 cut(s) 240, 571, 970
PleI GAGTC 2 cut(s) 877, 1189
PpsI GAGTC 2 cut(s) 877, 1189
Psp1406I AACGTT 1 cut(s) 315
Psp6I CCWGG 2 cut(s) 380, 996
PspGI CCWGG 2 cut(s) 380, 996
PspN4I GGNNCC 1 cut(s) 1127
PspPI GGNCC 1 cut(s) 1013
PstNI CAGNNNCTG 1 cut(s) 86
PsuI RGATCY 1 cut(s) 83
PvuII CAGCTG 2 cut(s) 238, 305
RsaI GTAC 3 cut(s) 300, 647, 863
RsaNI GTAC 3 cut(s) 299, 646, 862
RseI CAYNNNNRTG 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 884
SaqAI TTAA 3 cut(s) 135, 284, 503
SatI GCNGC 3 cut(s) 239, 570, 969
Sau3AI GATC 6 cut(s) 83, 319, 457, 619, 640, 982
Sau96I GGNCC 1 cut(s) 1013
SchI GAGTC 2 cut(s) 878, 1190
ScrFI CCNGG 2 cut(s) 382, 998
SfaNI GCATC 1 cut(s) 1104
SfcI CTRYAG 1 cut(s) 726
SmiMI CAYNNNNRTG 1 cut(s) 356
SmlI CTYRAG 1 cut(s) 400
SmoI CTYRAG 1 cut(s) 400
SphI GCATGC 3 cut(s) 565, 1077, 1086
SsiI CCGC 2 cut(s) 723, 787
SspI AATATT 1 cut(s) 604
SspMI CTAG 7 cut(s) 468, 552, 593, 767, 929, 1043, 1197
StyD4I CCNGG 2 cut(s) 380, 996
StyI CCWWGG 3 cut(s) 592, 928, 1042
TaaI ACNGT 3 cut(s) 576, 953, 1148
TaiI ACGT 1 cut(s) 318
TaqI TCGA 4 cut(s) 100, 494, 807, 831
TatI WGTACW 2 cut(s) 645, 861
Tru1I TTAA 3 cut(s) 135, 284, 503
Tru9I TTAA 3 cut(s) 135, 284, 503
TscAI CASTG 2 cut(s) 958, 1168
TseI GCWGC 3 cut(s) 238, 569, 968
TspDTI ATGAA 8 cut(s) 132, 213, 278, 465, 707, 797, 1147, 1202
TspGWI ACGGA 1 cut(s) 1015
TspRI CASTG 2 cut(s) 958, 1168
XagI CCTNNNNNAGG 1 cut(s) 932
XapI RAATTY 3 cut(s) 420, 635, 654
XceI RCATGY 3 cut(s) 565, 1077, 1086
XmaJI CCTAGG 3 cut(s) 592, 928, 1042
XmiI GTMKAC 1 cut(s) 1209
XspI CTAG 7 cut(s) 468, 552, 593, 767, 929, 1043, 1197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.