Rmu_sc0011990.1_g000003

negative regulation of protein maturation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011990.1
OG0012297
Physical Location & Seq
Reverse (-)
20044 .. 21713
1670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011990.1_g000003.1.cds

Sequence Viewer

Length: 1002 bp
atgctacctgttttcgtggatgaaaatcgcttcccctatccagcgaatgccacaaatcagctgcaattgtttggtaatgtaccagctggatgtaatgttgatcctgtaaattattttggaactgagcatatcactcccatgcttcggcctaataaacgaaccagggaaattgaagatatctcaagacagcagaagcttcaaatttctttgaactacaatgtctgtcaggatgaagctgatcgctcagctagcattccaaacccgaaccatgtatcaacaggtttaaggctatcatatgatgatgatgagcgcaactcgtctgttacatccgctagtggaagcatgccagcagcaccgtcaatgattttatccctaggggacaatattaggactgagcttgatcggcagaaggaagaatttgatcagtacatcaaaattcaggaggaacacttggcaaagggggtaagagacatgaagcagagacatatggcttctttccttaccgctatagagaaaggtgtaggcaaaaagctaagggagaaagacttggaaattgagaccatgaaccgcaagaaccgagaattggtcgatagaataagacaggtagctgtcgaagcccagaattggcattacagagccaagtacaatgagtcagttgtgaatgtgctaaagagcaacctccagcaagcaatttcacagggtgctgacctagggaaggagggttttggagacagtgaagttgacgacgctgcctcatacattgatccgactaactacctggccattcaaggtgggcctgcaaagtccgtatccaagaattacctagggttgaaggagcaaatggattgcagagcatgcaaagcatgccgagcaaaggaggtgtctatcttgttgatgccttgtagacacctgtgtttatgtaaggactgtgatgagttcatcagtgtttgccccgtatgcgagtcaatgaaaacggctagtttccaagtatacctgtcgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001817 GO:0001959 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0003824 GO:0004842 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006807 GO:0006915 GO:0007154 GO:0007165 GO:0007166 GO:0007249 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010466 GO:0010468 GO:0010604 GO:0010605 GO:0010629 GO:0010646 GO:0010647 GO:0010803 GO:0010939 GO:0010941 GO:0010951 GO:0010955 GO:0012501 GO:0016567 GO:0016579 GO:0016740 GO:0019221 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023052 GO:0023056 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0031325 GO:0031347 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032269 GO:0032270 GO:0032446 GO:0033209 GO:0034097 GO:0034121 GO:0034612 GO:0035556 GO:0036211 GO:0038061 GO:0039531 GO:0039535 GO:0042221 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043122 GO:0043123 GO:0043154 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043281 GO:0043412 GO:0043900 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045088 GO:0045861 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0050688 GO:0050727 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051239 GO:0051246 GO:0051247 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0052547 GO:0052548 GO:0060255 GO:0060544 GO:0060546 GO:0060547 GO:0060548 GO:0060759 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070013 GO:0070424 GO:0070613 GO:0070646 GO:0070647 GO:0070887 GO:0071310 GO:0071345 GO:0071356 GO:0071704 GO:0080090 GO:0080134 GO:0097340 GO:0097341 GO:0098772 GO:0140096 GO:1901564 GO:1902531 GO:1902533 GO:1903317 GO:1903318 GO:1903320 GO:1903322 GO:1990001 GO:2000116 GO:2000117
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

333

Amino Acids

37.51

Weight (kDa)

5.95

Isoelectric Point (pI)

48.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012297)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G10650 AT1G10650
fragaria_vesca FvH4_4g32940
malus_domestica MD13G1095100.v1.1 MD16G1096200.v1.1
prunus_persica Prupe.1G250200_v2.0.a1
pyrus_communis pycom13g08290 pycom16g08210
rosa_chinensis RchiOBHm_Chr4g0441971
rosa_laevigata RLG00000006054
rosa_multiflora Rmu_sc0002501.1_g000024 Rmu_sc0011990.1_g000003
rosa_roxburghii Rroxscaffold_5G00382840
rosa_rugosa Rorug04G0337400
rosa_samantha Rh4AG389400 Rh4BG402800 Rh4CG418000 Rh4DG395900
rosa_wichuraiana Rw4G033620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 904, 990
AciI CCGC 3 cut(s) 330, 504, 568
AclWI GGATC 2 cut(s) 95, 758
AcoI YGGCCR 1 cut(s) 780
AcsI RAATTY 3 cut(s) 201, 416, 435
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 3 cut(s) 81, 428, 644
AfiI CCNNNNNNNGG 5 cut(s) 144, 583, 624, 715, 874
AgsI TTSAA 5 cut(s) 173, 200, 211, 788, 832
AjnI CCWGG 2 cut(s) 161, 777
AjuI GAANNNNNNNTTGG 2 cut(s) 566, 598
AluBI AGCT 8 cut(s) 61, 86, 196, 236, 248, 397, 532, 608
AluI AGCT 8 cut(s) 61, 86, 196, 236, 248, 397, 532, 608
Alw26I GTCTC 4 cut(s) 462, 475, 551, 723
AlwI GGATC 2 cut(s) 95, 758
AoxI GGCC 3 cut(s) 146, 780, 794
ApeKI GCWGC 3 cut(s) 61, 350, 749
ApoI RAATTY 3 cut(s) 201, 416, 435
ArsI GACNNNNNNTTYG 2 cut(s) 866, 898
AspA2I CCTAGG 3 cut(s) 373, 709, 823
AspLEI GCGC 1 cut(s) 312
AspS9I GGNCC 1 cut(s) 794
AsuNHI GCTAGC 1 cut(s) 248
AvrII CCTAGG 3 cut(s) 373, 709, 823
BalI TGGCCA 1 cut(s) 782
BbvI GCAGC 3 cut(s) 48, 362, 736
BceAI ACGGC 1 cut(s) 990
BciT130I CCWGG 2 cut(s) 163, 779
BciVI GTATCC 1 cut(s) 820
BclI TGATCA 1 cut(s) 421
BcoDI GTCTC 4 cut(s) 462, 475, 551, 723
BfaI CTAG 6 cut(s) 249, 333, 374, 710, 824, 978
BfmI CTRYAG 1 cut(s) 507
BfuI GTATCC 1 cut(s) 820
BisI GCNGC 3 cut(s) 62, 351, 750
BlnI CCTAGG 3 cut(s) 373, 709, 823
BlpI GCTNAGC 1 cut(s) 244
BlsI GCNGC 3 cut(s) 63, 352, 751
Bme1390I CCNGG 2 cut(s) 163, 779
BmgT120I GGNCC 1 cut(s) 794
BmrFI CCNGG 2 cut(s) 163, 779
BmsI GCATC 1 cut(s) 885
BmtI GCTAGC 1 cut(s) 252
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BpmI CTGGAG 1 cut(s) 665
Bpu10I CCTNAGC 1 cut(s) 533
Bpu1102I GCTNAGC 1 cut(s) 244
BpuEI CTTGAG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 24
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 4 cut(s) 162, 373, 709, 823
Bsc4I CCNNNNNNNGG 5 cut(s) 144, 583, 624, 715, 874
Bse8I GATNNNNATC 1 cut(s) 24
BseBI CCWGG 2 cut(s) 163, 779
BseDI CCNNGG 4 cut(s) 162, 373, 709, 823
BseGI GGATG 4 cut(s) 25, 95, 235, 326
BseJI GATNNNNATC 1 cut(s) 24
BseLI CCNNNNNNNGG 5 cut(s) 144, 583, 624, 715, 874
BseMII CTCAG 3 cut(s) 114, 258, 384
BseXI GCAGC 3 cut(s) 48, 362, 736
BshFI GGCC 3 cut(s) 148, 782, 796
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 5 cut(s) 144, 583, 624, 715, 874
BsmAI GTCTC 4 cut(s) 462, 475, 551, 723
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 2 cut(s) 52, 252
BsnI GGCC 3 cut(s) 148, 782, 796
Bso31I GGTCTC 1 cut(s) 551
Bsp143I GATC 5 cut(s) 100, 238, 400, 421, 763
Bsp1720I GCTNAGC 1 cut(s) 244
BspACI CCGC 3 cut(s) 330, 504, 568
BspANI GGCC 3 cut(s) 148, 782, 796
BspCNI CTCAG 3 cut(s) 115, 257, 385
BspOI GCTAGC 1 cut(s) 252
BspPI GGATC 2 cut(s) 95, 758
BspTNI GGTCTC 1 cut(s) 551
BssECI CCNNGG 4 cut(s) 162, 373, 709, 823
BssMI GATC 5 cut(s) 100, 238, 400, 421, 763
BssNAI GTATAC 1 cut(s) 991
BssT1I CCWWGG 3 cut(s) 373, 709, 823
Bst1107I GTATAC 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 163, 779
Bst4CI ACNGT 3 cut(s) 357, 734, 929
BstAPI GCANNNNNTGC 2 cut(s) 855, 864
BstC8I GCNNGC 7 cut(s) 250, 344, 348, 687, 798, 856, 865
BstDEI CTNAG 4 cut(s) 123, 244, 393, 533
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 4 cut(s) 25, 95, 235, 326
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 5 cut(s) 103, 241, 403, 424, 766
BstMAI GTCTC 4 cut(s) 462, 475, 551, 723
BstMBI GATC 5 cut(s) 100, 238, 400, 421, 763
BstMWI GCNNNNNNNGC 8 cut(s) 249, 403, 614, 855, 860, 864, 869, 957
BstNI CCWGG 2 cut(s) 163, 779
BstNSI RCATGY 3 cut(s) 346, 858, 867
BstSCI CCNGG 2 cut(s) 161, 777
BstSFI CTRYAG 1 cut(s) 507
BstV1I GCAGC 3 cut(s) 48, 362, 736
BstZ17I GTATAC 1 cut(s) 991
BsuI GTATCC 1 cut(s) 820
BsuRI GGCC 3 cut(s) 148, 782, 796
BtsCI GGATG 4 cut(s) 25, 95, 235, 326
BtsIMutI CAGTG 2 cut(s) 739, 949
Cac8I GCNNGC 7 cut(s) 250, 344, 348, 687, 798, 856, 865
CfoI GCGC 1 cut(s) 312
Cfr13I GGNCC 1 cut(s) 794
CseI GACGC 1 cut(s) 755
Csp6I GTAC 3 cut(s) 80, 427, 643
CviAII CATG 7 cut(s) 139, 269, 343, 472, 562, 855, 864
CviQI GTAC 3 cut(s) 80, 427, 643
DdeI CTNAG 4 cut(s) 123, 244, 393, 533
DpnI GATC 5 cut(s) 102, 240, 402, 423, 765
DpnII GATC 5 cut(s) 100, 238, 400, 421, 763
DraIII CACNNNGTG 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 780
Eco130I CCWWGG 3 cut(s) 373, 709, 823
Eco31I GGTCTC 1 cut(s) 551
Eco32I GATATC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoRII CCWGG 2 cut(s) 161, 777
EcoRV GATATC 1 cut(s) 178
EcoT14I CCWWGG 3 cut(s) 373, 709, 823
ErhI CCWWGG 3 cut(s) 373, 709, 823
FaeI CATG 7 cut(s) 142, 272, 346, 475, 565, 858, 867
FaqI GGGAC 1 cut(s) 392
FatI CATG 7 cut(s) 138, 268, 342, 471, 561, 854, 863
FauNDI CATATG 2 cut(s) 295, 486
FbaI TGATCA 1 cut(s) 421
FblI GTMKAC 2 cut(s) 904, 990
Fnu4HI GCNGC 3 cut(s) 62, 351, 750
FokI GGATG 4 cut(s) 32, 102, 242, 313
Fsp4HI GCNGC 3 cut(s) 62, 351, 750
FspBI CTAG 6 cut(s) 249, 333, 374, 710, 824, 978
GlaI GCGC 1 cut(s) 311
GluI GCNGC 3 cut(s) 62, 351, 750
GsuI CTGGAG 1 cut(s) 665
HaeIII GGCC 3 cut(s) 148, 782, 796
HgaI GACGC 1 cut(s) 755
HhaI GCGC 1 cut(s) 312
Hin1II CATG 7 cut(s) 142, 272, 346, 475, 565, 858, 867
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HincII GTYRAC 1 cut(s) 742
HindII GTYRAC 1 cut(s) 742
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 2 cut(s) 650, 962
Hpy166II GTNNAC 3 cut(s) 742, 905, 991
Hpy188I TCNGA 1 cut(s) 768
Hpy188III TCNNGA 3 cut(s) 183, 227, 440
Hpy8I GTNNAC 3 cut(s) 742, 905, 991
Hpy99I CGWCG 1 cut(s) 749
HpyAV CCTTC 3 cut(s) 403, 709, 826
HpyCH4III ACNGT 3 cut(s) 357, 734, 929
HpyCH4V TGCA 4 cut(s) 64, 800, 849, 858
HpyF10VI GCNNNNNNNGC 8 cut(s) 249, 403, 614, 855, 860, 864, 869, 957
HpyF3I CTNAG 4 cut(s) 123, 244, 393, 533
Hsp92II CATG 7 cut(s) 142, 272, 346, 475, 565, 858, 867
HspAI GCGC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 5 cut(s) 100, 238, 400, 421, 763
LmnI GCTCC 1 cut(s) 835
Lsp1109I GCAGC 3 cut(s) 48, 362, 736
LweI GCATC 1 cut(s) 885
MaeI CTAG 6 cut(s) 249, 333, 374, 710, 824, 978
MaeIII GTNAC 1 cut(s) 322
MalI GATC 5 cut(s) 102, 240, 402, 423, 765
MboI GATC 5 cut(s) 100, 238, 400, 421, 763
MboII GAAGA 2 cut(s) 185, 425
MfeI CAATTG 1 cut(s) 65
MlsI TGGCCA 1 cut(s) 782
MluNI TGGCCA 1 cut(s) 782
MlyI GAGTC 2 cut(s) 659, 971
MmeI TCCRAC 1 cut(s) 791
MnlI CCTC 5 cut(s) 436, 689, 712, 763, 871
Mox20I TGGCCA 1 cut(s) 782
MscI TGGCCA 1 cut(s) 782
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 137
Msp20I TGGCCA 1 cut(s) 782
MspA1I CMGCKG 2 cut(s) 61, 86
MspR9I CCNGG 2 cut(s) 163, 779
MunI CAATTG 1 cut(s) 65
Mva1269I GAATGC 2 cut(s) 52, 252
MvaI CCWGG 2 cut(s) 163, 779
MwoI GCNNNNNNNGC 8 cut(s) 249, 403, 614, 855, 860, 864, 869, 957
NdeI CATATG 2 cut(s) 295, 486
NdeII GATC 5 cut(s) 100, 238, 400, 421, 763
NheI GCTAGC 1 cut(s) 248
NlaIII CATG 7 cut(s) 142, 272, 346, 475, 565, 858, 867
NmeAIII GCCGAG 1 cut(s) 893
NspI RCATGY 3 cut(s) 346, 858, 867
PaeI GCATGC 3 cut(s) 346, 858, 867
PctI GAATGC 2 cut(s) 52, 252
PkrI GCNGC 3 cut(s) 63, 352, 751
PleI GAGTC 2 cut(s) 658, 970
PpsI GAGTC 2 cut(s) 658, 970
Psp6I CCWGG 2 cut(s) 161, 777
PspGI CCWGG 2 cut(s) 161, 777
PspPI GGNCC 1 cut(s) 794
PvuII CAGCTG 2 cut(s) 61, 86
RsaI GTAC 3 cut(s) 81, 428, 644
RsaNI GTAC 3 cut(s) 80, 427, 643
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 3 cut(s) 62, 351, 750
Sau3AI GATC 5 cut(s) 100, 238, 400, 421, 763
Sau96I GGNCC 1 cut(s) 794
SchI GAGTC 2 cut(s) 659, 971
ScrFI CCNGG 2 cut(s) 163, 779
SfaNI GCATC 1 cut(s) 885
SfcI CTRYAG 1 cut(s) 507
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 181
SmoI CTYRAG 1 cut(s) 181
SphI GCATGC 3 cut(s) 346, 858, 867
SsiI CCGC 3 cut(s) 330, 504, 568
SspI AATATT 1 cut(s) 385
SspMI CTAG 6 cut(s) 249, 333, 374, 710, 824, 978
StyD4I CCNGG 2 cut(s) 161, 777
StyI CCWWGG 3 cut(s) 373, 709, 823
TaaI ACNGT 3 cut(s) 357, 734, 929
TaqI TCGA 2 cut(s) 588, 612
TatI WGTACW 2 cut(s) 426, 642
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TscAI CASTG 2 cut(s) 739, 949
TseI GCWGC 3 cut(s) 61, 350, 749
TspDTI ATGAA 6 cut(s) 36, 246, 488, 578, 928, 983
TspGWI ACGGA 1 cut(s) 796
TspRI CASTG 2 cut(s) 739, 949
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 3 cut(s) 201, 416, 435
XceI RCATGY 3 cut(s) 346, 858, 867
XmaJI CCTAGG 3 cut(s) 373, 709, 823
XmiI GTMKAC 2 cut(s) 904, 990
XspI CTAG 6 cut(s) 249, 333, 374, 710, 824, 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.