AT1G10710

synapsis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0008767
Physical Location & Seq
Forward (+)
3558358 .. 3560705
2348 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G10710.2

Sequence Viewer

Length: 1050 bp
ATGGCGGGATCTCTAACAGCATCAAACCGCCGTAGAAACGCGGAGGATTCTTCAGAAATTTACCGGTGGACGATCGGTTTTGCTCGGTTTGTTCACTATCCATCTTCTCCTTCTCCGCATCCAGTTCTGAAACCTCTCGGAAAGAGAGAGCAGTATCATTCGCCCCACGGAACCTGGCTGTCGGCGTCTTCTTCGACGGTTTCTCTCCACATTGTCGACGAATTGAACCGATCCGATGTGATTCTATCCGTCAAACTCGGCCAGAAAGTCCTTGAAGAACACTACATTTCAAAGCTGAACTTCACATGGCCTCAGATGTCATGCGTTTCTGGGTTTCCATCTCGTGGTAGTCGAGCGATTTTCGTTACCTATATGGATTCTGCTAACCAGATCCAGAAATTTGCTTTAAGGTTTTCCACTTGTGATGCAGCGTTGGAGTTTGTGGAAGCTCTTAAGGAGAAGATTAAGGGTTTAAAGGAAGCTTCGACTCAGAACCAGAAAAATAAAACTAGGTGTGATGTTTCTTTCCAGTCAGATTACAACCCTTCAGATGCGATTATCCCCAGAGCCACTCAGAAAGAGCCAAATATGGTTAGACCTCTTAATAGTTATGTTCCTGAAATGCTACCAAGAATTGTGTATGAAGCTCAGTACCAGAAAAGTGAAACTAGGTCCGAGGTTTCTTTCCAGTCAGATTACAACCCTTCAATTGAGATTTTCCCCAGAGCCACTGAGGAAGAGCCAAATATGGTTAGATTTTTTGATAGTTCTGTTCCTGAAGTGCTACCAAGACCTGAGTATGAAGCTGGACAAGCCTTATACCCATCACAATCCACGCTAAATCAAATCCCAAGTCTTCCTCCGAGTTTCACAACCTTACTCTCTGGCTGCTTCCCCGACTCCACTCTAGATGCAGGCCAAACAACTGTGAAGCAGAATCCTGATCTAAAGTCGCAGATACTGAAGTACATGGAAGATTCTTCATTTCAAGATATGCTGCAGAAAGTAGAGAGAATTATCGACGAAATTGGAGGTAACTGGATTACCTGA

Protein Analysis

349

Amino Acids

39.5

Weight (kDa)

5.95

Isoelectric Point (pI)

62.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PH_PHS1 PF25349 22 - 163 1.5e-58 Poor homologous synapsis protein PH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 344
AccI GTMKAC 1 cut(s) 216
AccII CGCG 1 cut(s) 41
AciI CCGC 4 cut(s) 5, 28, 41, 116
AclWI GGATC 3 cut(s) 16, 225, 385
AcoI YGGCCR 1 cut(s) 259
AcsI RAATTY 2 cut(s) 57, 398
AcuI CTGAAG 4 cut(s) 36, 531, 798, 983
AcyI GRCGYC 1 cut(s) 185
AfaI GTAC 2 cut(s) 653, 968
AfiI CCNNNNNNNGG 1 cut(s) 344
AflII CTTAAG 1 cut(s) 452
AgeI ACCGGT 1 cut(s) 63
AgsI TTSAA 5 cut(s) 226, 275, 291, 708, 989
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 5 cut(s) 295, 449, 482, 647, 806
AluI AGCT 5 cut(s) 295, 449, 482, 647, 806
AlwI GGATC 3 cut(s) 16, 225, 385
AlwNI CAGNNNCTG 1 cut(s) 961
AoxI GGCC 3 cut(s) 259, 308, 916
ApeKI GCWGC 3 cut(s) 428, 888, 997
ApoI RAATTY 2 cut(s) 57, 398
ArsI GACNNNNNNTTYG 2 cut(s) 838, 870
AsiGI ACCGGT 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 672
AvaII GGWCC 1 cut(s) 672
BaeI ACNNNNGTAYC 2 cut(s) 950, 983
BauI CACGAG 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 180, 848
BbvI GCAGC 3 cut(s) 440, 875, 984
BccI CCATC 3 cut(s) 109, 346, 832
BceAI ACGGC 1 cut(s) 15
BciT130I CCWGG 1 cut(s) 175
BfaI CTAG 3 cut(s) 510, 669, 908
BfmI CTRYAG 1 cut(s) 998
BfrI CTTAAG 1 cut(s) 452
BisI GCNGC 3 cut(s) 429, 889, 998
BlsI GCNGC 3 cut(s) 430, 890, 999
Bme1390I CCNGG 1 cut(s) 175
Bme18I GGWCC 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 672
BmiI GGNNCC 1 cut(s) 172
BmrFI CCNGG 1 cut(s) 175
BmsI GCATC 5 cut(s) 29, 127, 415, 541, 901
BpiI GAAGAC 2 cut(s) 180, 848
BsaHI GRCGYC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 166, 675
BsaWI WCCGGW 1 cut(s) 63
Bsc4I CCNNNNNNNGG 1 cut(s) 344
Bse118I RCCGGY 1 cut(s) 63
Bse1I ACTGG 4 cut(s) 122, 529, 688, 1043
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 166, 675
BseGI GGATG 1 cut(s) 118
BseLI CCNNNNNNNGG 1 cut(s) 344
BseMII CTCAG 6 cut(s) 326, 503, 587, 662, 723, 786
BseNI ACTGG 4 cut(s) 122, 529, 688, 1043
BseXI GCAGC 3 cut(s) 440, 875, 984
Bsh1236I CGCG 1 cut(s) 41
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 3 cut(s) 261, 310, 918
BshTI ACCGGT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 344
BsnI GGCC 3 cut(s) 261, 310, 918
Bsp143I GATC 5 cut(s) 8, 72, 230, 390, 943
BspACI CCGC 4 cut(s) 5, 28, 41, 116
BspANI GGCC 3 cut(s) 261, 310, 918
BspCNI CTCAG 6 cut(s) 325, 502, 586, 661, 724, 787
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 172
BspMAI CTGCAG 1 cut(s) 1002
BspPI GGATC 3 cut(s) 16, 225, 385
BspQI GCTCTTC 1 cut(s) 732
BspTI CTTAAG 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 63
BsrI ACTGG 4 cut(s) 122, 529, 688, 1043
BssAI RCCGGY 1 cut(s) 63
BssECI CCNNGG 2 cut(s) 166, 675
BssMI GATC 5 cut(s) 8, 72, 230, 390, 943
BssNI GRCGYC 1 cut(s) 185
BssSI CACGAG 1 cut(s) 342
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 199, 928
Bst6I CTCTTC 1 cut(s) 732
BstACI GRCGYC 1 cut(s) 185
BstAFI CTTAAG 1 cut(s) 452
BstC8I GCNNGC 1 cut(s) 916
BstDEI CTNAG 6 cut(s) 312, 489, 573, 648, 732, 795
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 1 cut(s) 118
BstFNI CGCG 1 cut(s) 41
BstKTI GATC 5 cut(s) 11, 75, 233, 393, 946
BstMBI GATC 5 cut(s) 8, 72, 230, 390, 943
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 812
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstSFI CTRYAG 1 cut(s) 998
BstUI CGCG 1 cut(s) 41
BstV1I GCAGC 3 cut(s) 440, 875, 984
BstV2I GAAGAC 2 cut(s) 180, 848
BstX2I RGATCY 2 cut(s) 8, 390
BstYI RGATCY 2 cut(s) 8, 390
BsuRI GGCC 3 cut(s) 261, 310, 918
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 118
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 916
CaiI CAGNNNCTG 1 cut(s) 961
Cfr10I RCCGGY 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 672
CseI GACGC 1 cut(s) 174
Csp6I GTAC 2 cut(s) 652, 967
CspAI ACCGGT 1 cut(s) 63
CviAII CATG 3 cut(s) 306, 321, 970
CviQI GTAC 2 cut(s) 652, 967
DdeI CTNAG 6 cut(s) 312, 489, 573, 648, 732, 795
DpnI GATC 5 cut(s) 10, 74, 232, 392, 945
DpnII GATC 5 cut(s) 8, 72, 230, 390, 943
DraI TTTAAA 1 cut(s) 474
EaeI YGGCCR 1 cut(s) 259
Eam1104I CTCTTC 1 cut(s) 732
EarI CTCTTC 1 cut(s) 732
Eco47I GGWCC 1 cut(s) 672
Eco57I CTGAAG 4 cut(s) 36, 531, 798, 983
EcoRII CCWGG 1 cut(s) 173
FaeI CATG 3 cut(s) 309, 324, 973
FalI AAGNNNNNCTT 2 cut(s) 284, 316
FatI CATG 3 cut(s) 305, 320, 969
FblI GTMKAC 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 429, 889, 998
FokI GGATG 1 cut(s) 105
Fsp4HI GCNGC 3 cut(s) 429, 889, 998
FspBI CTAG 3 cut(s) 510, 669, 908
GluI GCNGC 3 cut(s) 429, 889, 998
HaeIII GGCC 3 cut(s) 261, 310, 918
HapII CCGG 1 cut(s) 64
HgaI GACGC 1 cut(s) 174
Hin1I GRCGYC 1 cut(s) 185
Hin1II CATG 3 cut(s) 309, 324, 973
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 480
HinfI GANTC 7 cut(s) 47, 241, 377, 487, 899, 937, 977
HpaII CCGG 1 cut(s) 64
Hpy166II GTNNAC 3 cut(s) 69, 94, 217
Hpy188III TCNNGA 6 cut(s) 394, 617, 776, 908, 941, 989
Hpy8I GTNNAC 3 cut(s) 69, 94, 217
Hpy99I CGWCG 3 cut(s) 199, 221, 1025
HpyAV CCTTC 3 cut(s) 120, 555, 714
HpyCH4III ACNGT 2 cut(s) 199, 928
HpyCH4V TGCA 3 cut(s) 428, 914, 1000
HpyF10VI GCNNNNNNNGC 1 cut(s) 812
HpyF3I CTNAG 6 cut(s) 312, 489, 573, 648, 732, 795
Hsp92I GRCGYC 1 cut(s) 185
Hsp92II CATG 3 cut(s) 309, 324, 973
Kzo9I GATC 5 cut(s) 8, 72, 230, 390, 943
LguI GCTCTTC 1 cut(s) 732
Lsp1109I GCAGC 3 cut(s) 440, 875, 984
LweI GCATC 5 cut(s) 29, 127, 415, 541, 901
MaeI CTAG 3 cut(s) 510, 669, 908
MaeIII GTNAC 2 cut(s) 364, 1034
MalI GATC 5 cut(s) 10, 74, 232, 392, 945
MboI GATC 5 cut(s) 8, 72, 230, 390, 943
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 8, 390
MluCI AATT 7 cut(s) 57, 221, 398, 633, 708, 1014, 1026
MlyI GAGTC 2 cut(s) 481, 893
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 8 cut(s) 37, 144, 321, 609, 670, 727, 870, 1025
MseI TTAA 5 cut(s) 407, 453, 465, 473, 603
MspCI CTTAAG 1 cut(s) 452
MspI CCGG 1 cut(s) 64
MspR9I CCNGG 1 cut(s) 175
MunI CAATTG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 175
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 1 cut(s) 812
NdeII GATC 5 cut(s) 8, 72, 230, 390, 943
NlaIII CATG 3 cut(s) 309, 324, 973
NlaIV GGNNCC 1 cut(s) 172
NmeAIII GCCGAG 1 cut(s) 237
PciSI GCTCTTC 1 cut(s) 732
PcsI WCGNNNNNNNCGW 1 cut(s) 349
PfeI GAWTC 5 cut(s) 47, 241, 377, 937, 977
PflMI CCANNNNNTGG 1 cut(s) 344
PinAI ACCGGT 1 cut(s) 63
PkrI GCNGC 3 cut(s) 430, 890, 999
Ple19I CGATCG 1 cut(s) 75
PleI GAGTC 2 cut(s) 481, 893
PpsI GAGTC 2 cut(s) 481, 893
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
PspN4I GGNNCC 1 cut(s) 172
PspPI GGNCC 1 cut(s) 672
PstI CTGCAG 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 2 cut(s) 8, 390
PvuI CGATCG 1 cut(s) 75
RsaI GTAC 2 cut(s) 653, 968
RsaNI GTAC 2 cut(s) 652, 967
SalI GTCGAC 1 cut(s) 215
SapI GCTCTTC 1 cut(s) 732
SaqAI TTAA 5 cut(s) 407, 453, 465, 473, 603
SatI GCNGC 3 cut(s) 429, 889, 998
Sau3AI GATC 5 cut(s) 8, 72, 230, 390, 943
Sau96I GGNCC 1 cut(s) 672
SchI GAGTC 2 cut(s) 481, 893
ScrFI CCNGG 1 cut(s) 175
SfaNI GCATC 5 cut(s) 29, 127, 415, 541, 901
SfcI CTRYAG 1 cut(s) 998
SinI GGWCC 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 7 cut(s) 57, 221, 398, 633, 708, 1014, 1026
SsiI CCGC 4 cut(s) 5, 28, 41, 116
SspMI CTAG 3 cut(s) 510, 669, 908
StyD4I CCNGG 1 cut(s) 173
TaaI ACNGT 2 cut(s) 199, 928
TaqI TCGA 5 cut(s) 194, 216, 352, 485, 1020
TasI AATT 7 cut(s) 57, 221, 398, 633, 708, 1014, 1026
TatI WGTACW 1 cut(s) 966
TfiI GAWTC 5 cut(s) 47, 241, 377, 937, 977
Tru1I TTAA 5 cut(s) 407, 453, 465, 473, 603
Tru9I TTAA 5 cut(s) 407, 453, 465, 473, 603
TscAI CASTG 1 cut(s) 736
TseI GCWGC 3 cut(s) 428, 888, 997
TspDTI ATGAA 3 cut(s) 657, 816, 972
TspGWI ACGGA 2 cut(s) 183, 238
TspRI CASTG 1 cut(s) 736
Van91I CCANNNNNTGG 1 cut(s) 344
Vha464I CTTAAG 1 cut(s) 452
VpaK11BI GGWCC 1 cut(s) 672
XapI RAATTY 2 cut(s) 57, 398
XbaI TCTAGA 1 cut(s) 907
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 3 cut(s) 510, 669, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.