Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000354.1

Orthogroup ID

OG0008767

Physical Location & Seq

Genomic Coordinates Reverse (-)

51844 .. 52212

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000354.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atggcgggcactctggctttgataccaagcaatccgccggtgacgtcatcgtctctgagctccatccgagagcggtgggaggtcgagttcgctcgcttcttcggctaccctccgctcacctccacgtgtccagatctcgtccctcttcctatgaaggtcaggaatcgacggccggtcggtagctggatctccgccgcctccgccgccatgcttcaactcatttatgaccactccagctccgacgtcatcctcaccgtctgctccagcggcaagatcatggtgcctcctcctcctcctctagaaccttctcctttgctttttgaatttttgtcgtcgttgttgttaagctctgacgtttccgactgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.19

Weight (kDa)

5.18

Isoelectric Point (pI)

63.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10710 AT1G10710
fragaria_vesca	FvH4_4g25900 FvH4_4g25900 FvH4_4g25900
malus_domestica	MD13G1097800.v1.1 MD13G1097900.v1.1
prunus_persica	Prupe.1G247500_v2.0.a1 Prupe.1G247600_v2.0.a1 Prupe.1G247600_v2.0.a1
pyrus_communis	pycom13g08550
rosa_chinensis	RchiOBHm_Chr4g0433351
rosa_laevigata	RLG00000006761
rosa_multiflora	Rmu_sc0000354.1_g000013 Rmu_sc0000354.1_g000014 Rmu_sc0000759.1_g000014
rosa_roxburghii	Rroxscaffold_5G00374900
rosa_rugosa	Rorug04G0268000
rosa_samantha	Rh4AG322800 Rh4BG330500 Rh4CG345900 Rh4DG327000
rosa_wichuraiana	Rw4G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AatII	GACGTC	2 cut(s)	47, 246
AccB1I	GGYRCC	1 cut(s)	280
AccBSI	CCGCTC	2 cut(s)	73, 115
AciI	CCGC	9 cut(s)	5, 35, 73, 113, 192, 195, 201, 204, 267
AclWI	GGATC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	323
AcvI	CACGTG	1 cut(s)	126
AcyI	GRCGYC	2 cut(s)	44, 243
AflIII	ACRYGT	1 cut(s)	125
AgsI	TTSAA	2 cut(s)	215, 323
AhdI	GACNNNNNGTC	1 cut(s)	173
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	60, 183, 237, 348
AluI	AGCT	4 cut(s)	60, 183, 237, 348
Alw21I	GWGCWC	1 cut(s)	62
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	194
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	323
AsuHPI	GGTGA	3 cut(s)	52, 109, 244
BaeGI	GKGCMC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	62
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	185
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	3 cut(s)	195, 204, 268
BlsI	GCNGC	3 cut(s)	196, 205, 269
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	282
BpmI	CTGGAG	2 cut(s)	217, 247
BsaAI	YACGTR	1 cut(s)	126
BsaHI	GRCGYC	2 cut(s)	44, 243
BsaXI	ACNNNNNCTCC	4 cut(s)	71, 101, 221, 251
Bse118I	RCCGGY	2 cut(s)	37, 172
BseGI	GGATG	2 cut(s)	63, 246
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	4 cut(s)	276, 279, 282, 285
BseSI	GKGCMC	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	170
Bsh1285I	CGRYCG	2 cut(s)	173, 177
BshFI	GGCC	1 cut(s)	172
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	2 cut(s)	173, 177
BsiHKAI	GWGCWC	1 cut(s)	62
BsiSI	CCGG	2 cut(s)	38, 173
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	172
Bsp1286I	GDGCHC	2 cut(s)	11, 62
Bsp143I	GATC	3 cut(s)	133, 186, 273
BspACI	CCGC	9 cut(s)	5, 35, 73, 113, 192, 195, 201, 204, 267
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	48
BspLI	GGNNCC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	280
BsrBI	CCGCTC	2 cut(s)	73, 115
BsrFI	RCCGGY	2 cut(s)	37, 172
BssAI	RCCGGY	2 cut(s)	37, 172
BssMI	GATC	3 cut(s)	133, 186, 273
BssNI	GRCGYC	2 cut(s)	44, 243
Bst4CI	ACNGT	2 cut(s)	256, 365
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	2 cut(s)	44, 243
BstBAI	YACGTR	1 cut(s)	126
BstC8I	GCNNGC	2 cut(s)	7, 94
BstDEI	CTNAG	1 cut(s)	56
BstF5I	GGATG	2 cut(s)	63, 246
BstKTI	GATC	3 cut(s)	136, 189, 276
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	3 cut(s)	133, 186, 273
BstMCI	CGRYCG	2 cut(s)	173, 177
BstMWI	GCNNNNNNNGC	4 cut(s)	102, 200, 203, 267
BstSLI	GKGCMC	1 cut(s)	11
BstX2I	RGATCY	2 cut(s)	133, 186
BstYI	RGATCY	2 cut(s)	133, 186
BstZI	CGGCCG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	172
BtsCI	GGATG	2 cut(s)	63, 246
Cac8I	GCNNGC	2 cut(s)	7, 94
Cfr10I	RCCGGY	2 cut(s)	37, 172
CviAII	CATG	2 cut(s)	208, 277
CviJI	RGCY	7 cut(s)	17, 60, 105, 172, 183, 237, 348
CviKI_1	RGCY	7 cut(s)	17, 60, 105, 172, 183, 237, 348
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	3 cut(s)	135, 188, 275
DpnII	GATC	3 cut(s)	133, 186, 273
DrdI	GACNNNNNNGTC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	49
EaeI	YGGCCR	1 cut(s)	170
EagI	CGGCCG	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	150
EciI	GGCGGA	3 cut(s)	24, 181, 190
Ecl136II	GAGCTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	170
Eco24I	GRGCYC	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	60
EcoT38I	GRGCYC	1 cut(s)	62
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	211, 280
FaiI	YATR	4 cut(s)	152, 209, 225, 278
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	2 cut(s)	207, 276
Fnu4HI	GCNGC	3 cut(s)	195, 204, 268
FokI	GGATG	2 cut(s)	50, 233
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	195, 204, 268
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	3 cut(s)	195, 204, 268
GsuI	CTGGAG	2 cut(s)	217, 247
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	2 cut(s)	38, 173
Hin1I	GRCGYC	2 cut(s)	44, 243
Hin1II	CATG	2 cut(s)	211, 280
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	38, 173
HphI	GGTGA	3 cut(s)	52, 109, 244
Hpy188I	TCNGA	5 cut(s)	57, 68, 241, 352, 361
Hpy188III	TCNNGA	3 cut(s)	131, 160, 299
Hpy99I	CGWCG	3 cut(s)	171, 245, 337
HpyAV	CCTTC	2 cut(s)	148, 315
HpyCH4III	ACNGT	2 cut(s)	256, 365
HpyCH4IV	ACGT	4 cut(s)	44, 125, 243, 354
HpyF10VI	GCNNNNNNNGC	4 cut(s)	102, 200, 203, 267
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	4 cut(s)	44, 125, 243, 354
Hsp92I	GRCGYC	2 cut(s)	44, 243
Hsp92II	CATG	2 cut(s)	211, 280
Kzo9I	GATC	3 cut(s)	133, 186, 273
LmnI	GCTCC	3 cut(s)	65, 242, 266
LpnPI	CCDG	7 cut(s)	51, 144, 145, 169, 186, 247, 277
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	4 cut(s)	44, 125, 243, 354
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	3 cut(s)	135, 188, 275
MbiI	CCGCTC	2 cut(s)	73, 115
MboI	GATC	3 cut(s)	133, 186, 273
MboII	GAAGA	2 cut(s)	91, 137
MflI	RGATCY	2 cut(s)	133, 186
MhlI	GDGCHC	2 cut(s)	11, 62
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	264
MseI	TTAA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	38, 173
MwoI	GCNNNNNNNGC	4 cut(s)	102, 200, 203, 267
NdeII	GATC	3 cut(s)	133, 186, 273
NlaIII	CATG	2 cut(s)	211, 280
NlaIV	GGNNCC	1 cut(s)	282
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	196, 205, 269
PmaCI	CACGTG	1 cut(s)	126
PmlI	CACGTG	1 cut(s)	126
Ppu21I	YACGTR	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	62
PspCI	CACGTG	1 cut(s)	126
PspN4I	GGNNCC	1 cut(s)	282
PsuI	RGATCY	2 cut(s)	133, 186
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	3 cut(s)	195, 204, 268
Sau3AI	GATC	3 cut(s)	133, 186, 273
SduI	GDGCHC	2 cut(s)	11, 62
SgrAI	CRCCGGYG	1 cut(s)	37
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	9 cut(s)	5, 35, 73, 113, 192, 195, 201, 204, 267
SspMI	CTAG	1 cut(s)	299
SstI	GAGCTC	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	256, 365
TaiI	ACGT	4 cut(s)	47, 128, 246, 357
TaqI	TCGA	2 cut(s)	84, 166
TasI	AATT	1 cut(s)	323
TauI	GCSGC	3 cut(s)	197, 206, 270
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	40
Tsp45I	GTSAC	1 cut(s)	40
TspDTI	ATGAA	1 cut(s)	167
XapI	RAATTY	1 cut(s)	323
XbaI	TCTAGA	1 cut(s)	298
XspI	CTAG	1 cut(s)	299
ZraI	GACGTC	2 cut(s)	45, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.