Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008767

Physical Location & Seq

Genomic Coordinates Reverse (-)

6937499 .. 6940310

Gene Structure 2812 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1097800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCCCCAAACAAGCAATGCGGAGTGAAGAAGCGGAAATTAAAGAGAAAGAGTCTGGAAAAAATGGCGGACTCTCTCTCTCTGGTTGTGATACCGAACGAAAGCGCAGAGTTGGCGGCGACGGCGGCAGCTGCGAGCGCCGCCATTAAAGGGCAGTGGGAGGTCCACTTCTCTCGCTTCTTCCCCTATCCTCCTCAGATATCCACGTGTCCCGACCTCGTCCCTCTGCCTCCTAAATTCAGAAAGCGACGGCCGCGTAACAACTGGATCCCTTCCTCCTCCCCCGCTCAGCTCCAGCTGGCTCGCGATGGCTCGAGCTCCGACGCCATCCTCACCGTCTGTTTCACTGGAAAGACTTTGGAGGAGCACTATGTTTCGAAGCTACAGTTTGTCTGGCCTCAGGTTTCATGCATGTCTGGATTTCCTGCGAGGGGCACCAGAGCCGTGTTTGTCAACTACAAAGATCCTGCGGGCGAGGCAAGCTGCTCAATCCTTATCCAAAAATTCGGCCTGCGATTTTTGTCTCTCTCTGAGGCAGAGAAGTTTATGAATGCTTTAAAGGAGATTTGCAAGGAAGGGAAGGATAACGAAGCTGTTAATACTGACTGCGGACCTGAAATGTCATCACAATCTGGGTTGGTCTCTTCCAATAGACCCCACTGTCGGGCTTGCAAGGACTCGACTACTATGACTTCTGTTGAGACCTGTACGCCTCACATATCGCCAAGTGTTTTGGACAAGGAAGCTGATCAAACTGTTCAGACTTACATGCCTCAAATATCACCAAGCTTGTTGAAAAACGAAGCTGATCAAGCTGTTCAGAGTTATAAGCCTCAAATTTCACCATGCTTGTTGAAGAGCGAAGCTCGTCAATCCTCGCACACTCAAGAATCCATGCATATTGATAACTTTCAGAGCAACTTTGCAGCCTTGCCTCCAAGTTTCACCTCATTTCTGAGCAACTGTGGCCCTGTGATTGAACAAGTAATGGCAACACAACCAACTGCTCCACAGGAAGAAGTTCTCAAATCCCAAATTGCGAAATATATGGAAGATGCTTCCTTCCAAGATATGTTGTTTAAAGTGGAGAAAGTTATCAGTGAAATCGGAGGTGATATGCTGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

376

Amino Acids

41.31

Weight (kDa)

7.92

Isoelectric Point (pI)

67.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_PHS1	PF25349	52 - 198	2.7e-59	Poor homologous synapsis protein PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10710 AT1G10710
fragaria_vesca	FvH4_4g25900 FvH4_4g25900 FvH4_4g25900
malus_domestica	MD13G1097800.v1.1 MD13G1097900.v1.1
prunus_persica	Prupe.1G247500_v2.0.a1 Prupe.1G247600_v2.0.a1 Prupe.1G247600_v2.0.a1
pyrus_communis	pycom13g08550
rosa_chinensis	RchiOBHm_Chr4g0433351
rosa_laevigata	RLG00000006761
rosa_multiflora	Rmu_sc0000354.1_g000013 Rmu_sc0000354.1_g000014 Rmu_sc0000759.1_g000014
rosa_roxburghii	Rroxscaffold_5G00374900
rosa_rugosa	Rorug04G0268000
rosa_samantha	Rh4AG322800 Rh4BG330500 Rh4CG345900 Rh4DG327000
rosa_wichuraiana	Rw4G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	828
AasI	GACNNNNNNGTC	1 cut(s)	660
AccB1I	GGYRCC	1 cut(s)	434
AccBSI	CCGCTC	1 cut(s)	287
AccII	CGCG	2 cut(s)	256, 306
AclWI	GGATC	3 cut(s)	262, 275, 458
AcoI	YGGCCR	1 cut(s)	251
AcsI	RAATTY	3 cut(s)	236, 503, 837
AcvI	CACGTG	1 cut(s)	207
AcyI	GRCGYC	1 cut(s)	324
AfaI	GTAC	1 cut(s)	709
AfiI	CCNNNNNNNGG	4 cut(s)	150, 431, 663, 664
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	3 cut(s)	796, 856, 980
Alw21I	GWGCWC	2 cut(s)	320, 369
Alw26I	GTCTC	3 cut(s)	528, 646, 695
AlwI	GGATC	3 cut(s)	262, 275, 458
Ama87I	CYCGRG	1 cut(s)	313
AoxI	GGCC	5 cut(s)	3, 251, 395, 508, 967
ApeKI	GCWGC	5 cut(s)	128, 131, 483, 926, 1120
ApoI	RAATTY	3 cut(s)	236, 503, 837
Asp700I	GAANNNNTTC	1 cut(s)	1020
AspLEI	GCGC	2 cut(s)	107, 140
AspS9I	GGNCC	4 cut(s)	4, 163, 611, 968
AsuHPI	GGTGA	5 cut(s)	325, 774, 834, 937, 1124
AsuII	TTCGAA	1 cut(s)	377
AvaI	CYCGRG	1 cut(s)	313
AvaII	GGWCC	2 cut(s)	163, 611
AxyI	CCTNAGG	1 cut(s)	399
BaeGI	GKGCMC	1 cut(s)	437
BamHI	GGATCC	1 cut(s)	267
BanI	GGYRCC	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	320
BbrPI	CACGTG	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	320, 369
BbvI	GCAGC	5 cut(s)	118, 140, 470, 938, 1107
BccI	CCATC	2 cut(s)	302, 335
BceAI	ACGGC	3 cut(s)	138, 266, 428
BclI	TGATCA	2 cut(s)	748, 808
BcoDI	GTCTC	3 cut(s)	528, 646, 695
BfmI	CTRYAG	1 cut(s)	383
BfoI	RGCGCY	1 cut(s)	141
BisI	GCNGC	9 cut(s)	117, 126, 129, 132, 141, 254, 484, 927, 1121
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	9 cut(s)	118, 127, 130, 133, 142, 255, 485, 928, 1122
Bme18I	GGWCC	2 cut(s)	163, 611
BmeT110I	CYCGRG	1 cut(s)	313
BmgT120I	GGNCC	4 cut(s)	4, 163, 611, 968
BmiI	GGNNCC	3 cut(s)	6, 269, 436
BmsI	GCATC	1 cut(s)	1045
BplI	GAGNNNNNCTC	2 cut(s)	850, 882
BpmI	CTGGAG	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	870
BsaAI	YACGTR	1 cut(s)	207
BsaHI	GRCGYC	1 cut(s)	324
BsaI	GGTCTC	2 cut(s)	646, 695
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 431, 663, 664
Bse1I	ACTGG	2 cut(s)	269, 352
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	327
BseLI	CCNNNNNNNGG	4 cut(s)	150, 431, 663, 664
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	5 cut(s)	209, 302, 413, 522, 947
BseNI	ACTGG	2 cut(s)	269, 352
BseRI	GAGGAG	3 cut(s)	183, 268, 377
BseSI	GKGCMC	1 cut(s)	437
BseX3I	CGGCCG	1 cut(s)	251
BseXI	GCAGC	5 cut(s)	118, 140, 470, 938, 1107
Bsh1236I	CGCG	2 cut(s)	256, 306
Bsh1285I	CGRYCG	1 cut(s)	254
BshFI	GGCC	5 cut(s)	5, 253, 397, 510, 969
BshNI	GGYRCC	1 cut(s)	434
BsiEI	CGRYCG	1 cut(s)	254
BsiHKAI	GWGCWC	2 cut(s)	320, 369
BsiHKCI	CYCGRG	1 cut(s)	313
BslFI	GGGAC	2 cut(s)	195, 206
BslI	CCNNNNNNNGG	4 cut(s)	150, 431, 663, 664
BsmAI	GTCTC	3 cut(s)	528, 646, 695
BsmFI	GGGAC	2 cut(s)	195, 206
BsmI	GAATGC	1 cut(s)	556
BsnI	GGCC	5 cut(s)	5, 253, 397, 510, 969
Bso31I	GGTCTC	2 cut(s)	646, 695
BsoBI	CYCGRG	1 cut(s)	313
Bsp119I	TTCGAA	1 cut(s)	377
Bsp1286I	GDGCHC	3 cut(s)	320, 369, 437
Bsp143I	GATC	4 cut(s)	267, 463, 748, 808
Bsp1720I	GCTNAGC	1 cut(s)	288
Bsp68I	TCGCGA	1 cut(s)	306
BspANI	GGCC	5 cut(s)	5, 253, 397, 510, 969
BspCNI	CTCAG	5 cut(s)	208, 301, 412, 523, 948
BspFNI	CGCG	2 cut(s)	256, 306
BspLI	GGNNCC	3 cut(s)	6, 269, 436
BspPI	GGATC	3 cut(s)	262, 275, 458
BspQI	GCTCTTC	1 cut(s)	851
BspT104I	TTCGAA	1 cut(s)	377
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	2 cut(s)	646, 695
BsrBI	CCGCTC	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	269, 352
BssMI	GATC	4 cut(s)	267, 463, 748, 808
BssNI	GRCGYC	1 cut(s)	324
Bst4CI	ACNGT	5 cut(s)	337, 387, 662, 757, 965
Bst6I	CTCTTC	2 cut(s)	649, 851
BstACI	GRCGYC	1 cut(s)	324
BstBAI	YACGTR	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	377
BstC8I	GCNNGC	7 cut(s)	136, 300, 304, 472, 481, 512, 670
BstDEI	CTNAG	5 cut(s)	195, 288, 399, 531, 956
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	2 cut(s)	256, 306
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	2 cut(s)	107, 140
BstKTI	GATC	4 cut(s)	270, 466, 751, 811
BstMAI	GTCTC	3 cut(s)	528, 646, 695
BstMBI	GATC	4 cut(s)	267, 463, 748, 808
BstMCI	CGRYCG	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	415, 772
BstSFI	CTRYAG	1 cut(s)	383
BstSLI	GKGCMC	1 cut(s)	437
BstUI	CGCG	2 cut(s)	256, 306
BstV1I	GCAGC	5 cut(s)	118, 140, 470, 938, 1107
BstX2I	RGATCY	2 cut(s)	267, 463
BstYI	RGATCY	2 cut(s)	267, 463
BstZI	CGGCCG	1 cut(s)	251
Bsu36I	CCTNAGG	1 cut(s)	399
BsuRI	GGCC	5 cut(s)	5, 253, 397, 510, 969
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	161
BtsIMutI	CAGTG	4 cut(s)	161, 345, 658, 1105
BtuMI	TCGCGA	1 cut(s)	306
Cac8I	GCNNGC	7 cut(s)	136, 300, 304, 472, 481, 512, 670
CfoI	GCGC	2 cut(s)	107, 140
Cfr13I	GGNCC	4 cut(s)	4, 163, 611, 968
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	1 cut(s)	708
CviAII	CATG	5 cut(s)	408, 412, 769, 846, 895
CviQI	GTAC	1 cut(s)	708
DdeI	CTNAG	5 cut(s)	195, 288, 399, 531, 956
DpnI	GATC	4 cut(s)	269, 465, 750, 810
DpnII	GATC	4 cut(s)	267, 463, 748, 808
DraI	TTTAAA	2 cut(s)	558, 1081
DrdI	GACNNNNNNGTC	1 cut(s)	660
DseDI	GACNNNNNNGTC	1 cut(s)	660
EaeI	YGGCCR	1 cut(s)	251
EagI	CGGCCG	1 cut(s)	251
Eam1104I	CTCTTC	2 cut(s)	649, 851
EarI	CTCTTC	2 cut(s)	649, 851
EciI	GGCGGA	1 cut(s)	83
Ecl136II	GAGCTC	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	320
Eco31I	GGTCTC	2 cut(s)	646, 695
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	163, 611
Eco52I	CGGCCG	1 cut(s)	251
Eco53kI	GAGCTC	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	207
Eco81I	CCTNAGG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	313
EcoICRI	GAGCTC	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	201
EcoT22I	ATGCAT	2 cut(s)	413, 900
EcoT38I	GRGCYC	1 cut(s)	320
FaeI	CATG	5 cut(s)	411, 415, 772, 849, 898
FaqI	GGGAC	2 cut(s)	195, 206
FatI	CATG	5 cut(s)	407, 411, 768, 845, 894
FauI	CCCGC	2 cut(s)	292, 463
FbaI	TGATCA	2 cut(s)	748, 808
Fnu4HI	GCNGC	9 cut(s)	117, 126, 129, 132, 141, 254, 484, 927, 1121
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	9 cut(s)	117, 126, 129, 132, 141, 254, 484, 927, 1121
GlaI	GCGC	2 cut(s)	106, 139
GluI	GCNGC	9 cut(s)	117, 126, 129, 132, 141, 254, 484, 927, 1121
GsuI	CTGGAG	1 cut(s)	278
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	5 cut(s)	5, 253, 397, 510, 969
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	107, 140
Hin1I	GRCGYC	1 cut(s)	324
Hin1II	CATG	5 cut(s)	411, 415, 772, 849, 898
Hin6I	GCGC	2 cut(s)	105, 138
HinP1I	GCGC	2 cut(s)	105, 138
HincII	GTYRAC	1 cut(s)	454
HindII	GTYRAC	1 cut(s)	454
HindIII	AAGCTT	1 cut(s)	787
HinfI	GANTC	4 cut(s)	52, 71, 677, 890
HphI	GGTGA	5 cut(s)	325, 774, 834, 937, 1124
Hpy166II	GTNNAC	2 cut(s)	166, 454
Hpy188I	TCNGA	9 cut(s)	198, 242, 322, 532, 762, 822, 915, 957, 1109
Hpy188III	TCNNGA	5 cut(s)	56, 212, 305, 417, 887
Hpy8I	GTNNAC	2 cut(s)	166, 454
Hpy99I	CGWCG	3 cut(s)	124, 252, 326
HpyAV	CCTTC	4 cut(s)	282, 569, 574, 1072
HpyCH4III	ACNGT	5 cut(s)	337, 387, 662, 757, 965
HpyCH4IV	ACGT	1 cut(s)	206
HpyCH4V	TGCA	5 cut(s)	411, 570, 672, 898, 926
HpyF3I	CTNAG	5 cut(s)	195, 288, 399, 531, 956
HpySE526I	ACGT	1 cut(s)	206
Hsp92I	GRCGYC	1 cut(s)	324
Hsp92II	CATG	5 cut(s)	411, 415, 772, 849, 898
HspAI	GCGC	2 cut(s)	105, 138
Ksp22I	TGATCA	2 cut(s)	748, 808
Kzo9I	GATC	4 cut(s)	267, 463, 748, 808
LguI	GCTCTTC	1 cut(s)	851
LmnI	GCTCC	4 cut(s)	297, 323, 364, 1012
Lsp1109I	GCAGC	5 cut(s)	118, 140, 470, 938, 1107
LweI	GCATC	1 cut(s)	1045
MaeII	ACGT	1 cut(s)	206
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	4 cut(s)	269, 465, 750, 810
MbiI	CCGCTC	1 cut(s)	287
MboI	GATC	4 cut(s)	267, 463, 748, 808
MboII	GAAGA	6 cut(s)	40, 172, 636, 868, 1028, 1064
MflI	RGATCY	2 cut(s)	267, 463
MhlI	GDGCHC	3 cut(s)	320, 369, 437
MluCI	AATT	5 cut(s)	38, 236, 503, 837, 1035
MlyI	GAGTC	3 cut(s)	61, 65, 671
MmeI	TCCRAC	1 cut(s)	345
Mph1103I	ATGCAT	2 cut(s)	413, 900
MroXI	GAANNNNTTC	1 cut(s)	1020
MseI	TTAA	5 cut(s)	41, 147, 557, 597, 1080
MspA1I	CMGCKG	2 cut(s)	131, 298
Mva1269I	GAATGC	1 cut(s)	556
MvnI	CGCG	2 cut(s)	256, 306
NdeII	GATC	4 cut(s)	267, 463, 748, 808
NlaIII	CATG	5 cut(s)	411, 415, 772, 849, 898
NlaIV	GGNNCC	3 cut(s)	6, 269, 436
NruI	TCGCGA	1 cut(s)	306
NsiI	ATGCAT	2 cut(s)	413, 900
NspI	RCATGY	2 cut(s)	415, 772
NspV	TTCGAA	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	313
PciSI	GCTCTTC	1 cut(s)	851
PctI	GAATGC	1 cut(s)	556
PdmI	GAANNNNTTC	1 cut(s)	1020
PfeI	GAWTC	1 cut(s)	890
PflFI	GACNNNGTC	1 cut(s)	218
PkrI	GCNGC	9 cut(s)	118, 127, 130, 133, 142, 255, 485, 928, 1122
PleI	GAGTC	3 cut(s)	60, 65, 671
PmaCI	CACGTG	1 cut(s)	207
PmlI	CACGTG	1 cut(s)	207
PpsI	GAGTC	3 cut(s)	60, 65, 671
Ppu21I	YACGTR	1 cut(s)	207
PsiI	TTATAA	1 cut(s)	828
Psp124BI	GAGCTC	1 cut(s)	320
PspCI	CACGTG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	6, 269, 436
PspPI	GGNCC	4 cut(s)	4, 163, 611, 968
PspXI	VCTCGAGB	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	267, 463
PsyI	GACNNNGTC	1 cut(s)	218
PvuII	CAGCTG	2 cut(s)	131, 298
RruI	TCGCGA	1 cut(s)	306
RsaI	GTAC	1 cut(s)	709
RsaNI	GTAC	1 cut(s)	708
SacI	GAGCTC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	851
SaqAI	TTAA	5 cut(s)	41, 147, 557, 597, 1080
SatI	GCNGC	9 cut(s)	117, 126, 129, 132, 141, 254, 484, 927, 1121
Sau3AI	GATC	4 cut(s)	267, 463, 748, 808
Sau96I	GGNCC	4 cut(s)	4, 163, 611, 968
SchI	GAGTC	3 cut(s)	61, 65, 671
SduI	GDGCHC	3 cut(s)	320, 369, 437
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	1 cut(s)	383
Sfr274I	CTCGAG	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	377
SinI	GGWCC	2 cut(s)	163, 611
SlaI	CTCGAG	1 cut(s)	313
SmlI	CTYRAG	2 cut(s)	313, 885
SmoI	CTYRAG	2 cut(s)	313, 885
Sse9I	AATT	5 cut(s)	38, 236, 503, 837, 1035
SstI	GAGCTC	1 cut(s)	320
TaaI	ACNGT	5 cut(s)	337, 387, 662, 757, 965
TaiI	ACGT	1 cut(s)	209
TaqI	TCGA	3 cut(s)	314, 377, 680
TasI	AATT	5 cut(s)	38, 236, 503, 837, 1035
TauI	GCSGC	4 cut(s)	119, 128, 143, 256
TfiI	GAWTC	1 cut(s)	890
Tru1I	TTAA	5 cut(s)	41, 147, 557, 597, 1080
Tru9I	TTAA	5 cut(s)	41, 147, 557, 597, 1080
TscAI	CASTG	4 cut(s)	161, 352, 665, 1105
TseI	GCWGC	5 cut(s)	128, 131, 483, 926, 1120
TspDTI	ATGAA	2 cut(s)	396, 563
TspRI	CASTG	4 cut(s)	161, 352, 665, 1105
Tth111I	GACNNNGTC	1 cut(s)	218
VpaK11BI	GGWCC	2 cut(s)	163, 611
XapI	RAATTY	3 cut(s)	236, 503, 837
XceI	RCATGY	2 cut(s)	415, 772
XhoI	CTCGAG	1 cut(s)	313
XmnI	GAANNNNTTC	1 cut(s)	1020
Zsp2I	ATGCAT	2 cut(s)	413, 900

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.