Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008767

Physical Location & Seq

Genomic Coordinates Forward (+)

26036030 .. 26039515

Gene Structure 3486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G247600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGACCCAAACCAAGGCGGAGAGAAGAAACAGAGAAGAAAGAGAAAGAGCCTGAAAGAAATGGCCCGCTCTCTGGCTGTGGTACCATGCGAAAGCGTACAGTCGGTTCAGACGAAGCCGACGACGGCGACTGTGAGCGCCGTTAGGGAGCAGTGGGAGGTCCACTTCGCTCTCTTCTTCCCTTATCCTCCTCCTCCGATCACCTCCACGTGTCCCGATCTCGTACCTCTGGATCCCAAGTACAGAAGGCGACGGCCACTTGACCGCTGGATCTCTTCCTCCTCCTTAGCTCGGCTCCAACTTGCTCGCGATCACTCCAACTCCGAAGTCGTCCTCACCGTCGGTTTCGCGGACAAGATTCTGGAGGAGCACTATGTTTCCAAGCTACATTTTATCTGGCCTCAGGTTTCATGCATGTCTGGATTTCCTGCCAGGGGTACCAGAGCCATCTTTGTCAGCTACAGAGATTGTTCGGAAGAGATCCAGAAATTTGGTTTTCGATTTTTGTCTCTCCAGGAGGCAGAGAAATTCATGAATGCTTTGAAGGGTATCTGCAAGGAAGGGATGGATACTGAACCTGTTAATACTGACGTTGGATCTGAAATTTCATCACAGTCTGAGCTCACGTCCTCTAATAGACCCCTCAACCCGGCTTGCAAGGACTTGACTACCATGACTCCTGTTCAGACTTATACGCCTAAAATATCACCCAGCTTGTTGAATAATGAAGCTGAGCAATACTCATGCACTCAAGAATTCACGCCTATTGATAACTTCCAGAGCAACTTTGCAGCCTTGCCTCCAAGTTTCACCTCATTTCTAAGCAACTGTGGCCCTGTTGTTGAACAAGTGGCAACACAACCAACTGGATCCCAGGAAGTCGATCTCAAATCCCAAATCGCGAGATATATGGAAGATGCTTCCTTCCAAGATATGTTGTTTCAAGTGGAGAAAGTTATCAGTGAAATAGGAGGCGATTCGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.91

Weight (kDa)

5.73

Isoelectric Point (pI)

59.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10710 AT1G10710
fragaria_vesca	FvH4_4g25900 FvH4_4g25900 FvH4_4g25900
malus_domestica	MD13G1097800.v1.1 MD13G1097900.v1.1
prunus_persica	Prupe.1G247500_v2.0.a1 Prupe.1G247600_v2.0.a1 Prupe.1G247600_v2.0.a1
pyrus_communis	pycom13g08550
rosa_chinensis	RchiOBHm_Chr4g0433351
rosa_laevigata	RLG00000006761
rosa_multiflora	Rmu_sc0000354.1_g000013 Rmu_sc0000354.1_g000014 Rmu_sc0000759.1_g000014
rosa_roxburghii	Rroxscaffold_5G00374900
rosa_rugosa	Rorug04G0268000
rosa_samantha	Rh4AG322800 Rh4BG330500 Rh4CG345900 Rh4DG327000
rosa_wichuraiana	Rw4G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	82, 437
AccB1I	GGYRCC	2 cut(s)	82, 437
AccBSI	CCGCTC	1 cut(s)	69
AccII	CGCG	3 cut(s)	309, 350, 902
AciI	CCGC	4 cut(s)	18, 67, 265, 350
AclWI	GGATC	7 cut(s)	227, 240, 278, 475, 604, 864, 877
AcoI	YGGCCR	1 cut(s)	254
AcsI	RAATTY	4 cut(s)	488, 527, 603, 755
AcvI	CACGTG	1 cut(s)	210
AfaI	GTAC	5 cut(s)	84, 99, 225, 242, 439
AfiI	CCNNNNNNNGG	5 cut(s)	14, 73, 291, 434, 649
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	4 cut(s)	544, 721, 845, 944
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	3 cut(s)	431, 513, 873
AluBI	AGCT	6 cut(s)	290, 385, 459, 622, 714, 731
AluI	AGCT	6 cut(s)	290, 385, 459, 622, 714, 731
Alw21I	GWGCWC	2 cut(s)	372, 624
Alw26I	GTCTC	1 cut(s)	513
AlwI	GGATC	7 cut(s)	227, 240, 278, 475, 604, 864, 877
AoxI	GGCC	4 cut(s)	63, 254, 398, 832
ApeKI	GCWGC	1 cut(s)	791
ApoI	RAATTY	4 cut(s)	488, 527, 603, 755
Asp718I	GGTACC	2 cut(s)	82, 437
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	4 cut(s)	4, 64, 160, 833
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	4 cut(s)	193, 328, 699, 802
AvaII	GGWCC	2 cut(s)	4, 160
AxyI	CCTNAGG	1 cut(s)	402
BamHI	GGATCC	2 cut(s)	232, 869
BanI	GGYRCC	2 cut(s)	82, 437
BanII	GRGCYC	1 cut(s)	624
BbrPI	CACGTG	1 cut(s)	210
Bbv12I	GWGCWC	2 cut(s)	372, 624
BbvI	GCAGC	1 cut(s)	803
BccI	CCATC	2 cut(s)	455, 559
BceAI	ACGGC	3 cut(s)	125, 141, 269
BciT130I	CCWGG	3 cut(s)	433, 515, 875
BciVI	GTATCC	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	460
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	1 cut(s)	562
BisI	GCNGC	1 cut(s)	792
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	793
Bme1390I	CCNGG	4 cut(s)	433, 515, 650, 875
Bme18I	GGWCC	2 cut(s)	4, 160
BmgBI	CACGTC	1 cut(s)	627
BmgT120I	GGNCC	4 cut(s)	4, 64, 160, 833
BmiI	GGNNCC	6 cut(s)	6, 84, 234, 296, 439, 871
BmrFI	CCNGG	4 cut(s)	433, 515, 650, 875
BmsI	GCATC	2 cut(s)	907, 972
BplI	GAGNNNNNCTC	2 cut(s)	725, 757
BpmI	CTGGAG	2 cut(s)	383, 497
Bpu10I	CCTNAGC	1 cut(s)	286
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	735
BpuMI	CCSGG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	210
BsaJI	CCNNGG	3 cut(s)	13, 432, 873
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 661, 691
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 73, 291, 434, 649
Bse1I	ACTGG	1 cut(s)	871
Bse21I	CCTNAGG	1 cut(s)	402
BseBI	CCWGG	3 cut(s)	433, 515, 875
BseDI	CCNNGG	3 cut(s)	13, 432, 873
BseGI	GGATG	1 cut(s)	570
BseLI	CCNNNNNNNGG	5 cut(s)	14, 73, 291, 434, 649
BseMII	CTCAG	3 cut(s)	416, 609, 723
BseNI	ACTGG	1 cut(s)	871
BseRI	GAGGAG	4 cut(s)	180, 183, 271, 380
BseXI	GCAGC	1 cut(s)	803
BseYI	CCCAGC	1 cut(s)	710
Bsh1236I	CGCG	3 cut(s)	309, 350, 902
BshFI	GGCC	4 cut(s)	65, 256, 400, 834
BshNI	GGYRCC	2 cut(s)	82, 437
BsiHKAI	GWGCWC	2 cut(s)	372, 624
BsiSI	CCGG	1 cut(s)	650
BslFI	GGGAC	1 cut(s)	198
BslI	CCNNNNNNNGG	5 cut(s)	14, 73, 291, 434, 649
BsmAI	GTCTC	1 cut(s)	513
BsmFI	GGGAC	1 cut(s)	198
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	4 cut(s)	65, 256, 400, 834
Bsp1286I	GDGCHC	2 cut(s)	372, 624
Bsp143I	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp68I	TCGCGA	2 cut(s)	309, 902
BspACI	CCGC	4 cut(s)	18, 67, 265, 350
BspANI	GGCC	4 cut(s)	65, 256, 400, 834
BspCNI	CTCAG	3 cut(s)	415, 610, 724
BspFNI	CGCG	3 cut(s)	309, 350, 902
BspHI	TCATGA	1 cut(s)	531
BspLI	GGNNCC	6 cut(s)	6, 84, 234, 296, 439, 871
BspPI	GGATC	7 cut(s)	227, 240, 278, 475, 604, 864, 877
BspT107I	GGYRCC	2 cut(s)	82, 437
BsrBI	CCGCTC	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	871
BssECI	CCNNGG	3 cut(s)	13, 432, 873
BssMI	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
BssT1I	CCWWGG	1 cut(s)	13
Bst2UI	CCWGG	3 cut(s)	433, 515, 875
Bst4CI	ACNGT	5 cut(s)	102, 133, 340, 615, 830
Bst6I	CTCTTC	3 cut(s)	179, 280, 471
BstBAI	YACGTR	1 cut(s)	210
BstC8I	GCNNGC	3 cut(s)	67, 307, 655
BstDEI	CTNAG	5 cut(s)	286, 402, 618, 732, 821
BstF5I	GGATG	1 cut(s)	570
BstFNI	CGCG	3 cut(s)	309, 350, 902
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	9 cut(s)	201, 220, 235, 273, 313, 483, 599, 872, 886
BstMAI	GTCTC	1 cut(s)	513
BstMBI	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
BstMWI	GCNNNNNNNGC	1 cut(s)	831
BstNI	CCWGG	3 cut(s)	433, 515, 875
BstNSI	RCATGY	1 cut(s)	418
BstSCI	CCNGG	4 cut(s)	431, 513, 648, 873
BstSFI	CTRYAG	1 cut(s)	460
BstUI	CGCG	3 cut(s)	309, 350, 902
BstV1I	GCAGC	1 cut(s)	803
BstX2I	RGATCY	5 cut(s)	232, 270, 480, 596, 869
BstXI	CCANNNNNNTGG	1 cut(s)	491
BstYI	RGATCY	5 cut(s)	232, 270, 480, 596, 869
Bsu36I	CCTNAGG	1 cut(s)	402
BsuI	GTATCC	1 cut(s)	562
BsuRI	GGCC	4 cut(s)	65, 256, 400, 834
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	1 cut(s)	570
BtsI	GCAGTG	1 cut(s)	158
BtsIMutI	CAGTG	2 cut(s)	158, 967
BtuMI	TCGCGA	2 cut(s)	309, 902
Cac8I	GCNNGC	3 cut(s)	67, 307, 655
CciI	TCATGA	1 cut(s)	531
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	4 cut(s)	4, 64, 160, 833
Csp6I	GTAC	5 cut(s)	83, 98, 224, 241, 438
CviAII	CATG	6 cut(s)	87, 411, 415, 532, 673, 744
CviQI	GTAC	5 cut(s)	83, 98, 224, 241, 438
DdeI	CTNAG	5 cut(s)	286, 402, 618, 732, 821
DpnI	GATC	9 cut(s)	200, 219, 234, 272, 312, 482, 598, 871, 885
DpnII	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
EaeI	YGGCCR	1 cut(s)	254
Eam1104I	CTCTTC	3 cut(s)	179, 280, 471
EarI	CTCTTC	3 cut(s)	179, 280, 471
EciI	GGCGGA	1 cut(s)	33
Ecl136II	GAGCTC	1 cut(s)	622
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	624
Eco47I	GGWCC	2 cut(s)	4, 160
Eco53kI	GAGCTC	1 cut(s)	622
Eco72I	CACGTG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	622
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	3 cut(s)	431, 513, 873
EcoT14I	CCWWGG	1 cut(s)	13
EcoT22I	ATGCAT	1 cut(s)	416
EcoT38I	GRGCYC	1 cut(s)	624
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	6 cut(s)	90, 414, 418, 535, 676, 747
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	6 cut(s)	86, 410, 414, 531, 672, 743
FauI	CCCGC	1 cut(s)	74
Fnu4HI	GCNGC	1 cut(s)	792
FokI	GGATG	1 cut(s)	577
FriOI	GRGCYC	1 cut(s)	624
Fsp4HI	GCNGC	1 cut(s)	792
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	792
GsaI	CCCAGC	1 cut(s)	714
GsuI	CTGGAG	2 cut(s)	383, 497
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	65, 256, 400, 834
HapII	CCGG	1 cut(s)	650
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	6 cut(s)	90, 414, 418, 535, 676, 747
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HinfI	GANTC	3 cut(s)	358, 676, 977
HpaII	CCGG	1 cut(s)	650
HphI	GGTGA	4 cut(s)	193, 328, 699, 802
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	7 cut(s)	111, 198, 325, 475, 601, 619, 687
Hpy8I	GTNNAC	1 cut(s)	163
Hpy99I	CGWCG	4 cut(s)	124, 127, 255, 344
HpyAV	CCTTC	4 cut(s)	240, 538, 554, 934
HpyCH4III	ACNGT	5 cut(s)	102, 133, 340, 615, 830
HpyCH4IV	ACGT	3 cut(s)	209, 591, 626
HpyCH4V	TGCA	5 cut(s)	414, 555, 657, 747, 791
HpyF10VI	GCNNNNNNNGC	1 cut(s)	831
HpyF3I	CTNAG	5 cut(s)	286, 402, 618, 732, 821
HpySE526I	ACGT	3 cut(s)	209, 591, 626
Hsp92II	CATG	6 cut(s)	90, 414, 418, 535, 676, 747
HspAI	GCGC	1 cut(s)	138
KpnI	GGTACC	2 cut(s)	86, 441
Kzo9I	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
LmnI	GCTCC	3 cut(s)	148, 300, 367
Lsp1109I	GCAGC	1 cut(s)	803
LweI	GCATC	2 cut(s)	907, 972
MaeII	ACGT	3 cut(s)	209, 591, 626
MalI	GATC	9 cut(s)	200, 219, 234, 272, 312, 482, 598, 871, 885
MbiI	CCGCTC	1 cut(s)	69
MboI	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
MboII	GAAGA	7 cut(s)	37, 48, 166, 169, 267, 488, 926
MflI	RGATCY	5 cut(s)	232, 270, 480, 596, 869
MhlI	GDGCHC	2 cut(s)	372, 624
MluCI	AATT	4 cut(s)	488, 527, 603, 755
MlyI	GAGTC	1 cut(s)	670
MmeI	TCCRAC	3 cut(s)	322, 342, 574
Mph1103I	ATGCAT	1 cut(s)	416
MseI	TTAA	1 cut(s)	582
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	1 cut(s)	650
MspR9I	CCNGG	4 cut(s)	433, 515, 650, 875
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	3 cut(s)	433, 515, 875
MvnI	CGCG	3 cut(s)	309, 350, 902
MwoI	GCNNNNNNNGC	1 cut(s)	831
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
NlaIII	CATG	6 cut(s)	90, 414, 418, 535, 676, 747
NlaIV	GGNNCC	6 cut(s)	6, 84, 234, 296, 439, 871
NmeAIII	GCCGAG	1 cut(s)	271
NruI	TCGCGA	2 cut(s)	309, 902
NsiI	ATGCAT	1 cut(s)	416
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	3 cut(s)	110, 119, 336
PctI	GAATGC	1 cut(s)	541
PfeI	GAWTC	2 cut(s)	358, 977
PfoI	TCCNGGA	1 cut(s)	513
PkrI	GCNGC	1 cut(s)	793
PleI	GAGTC	1 cut(s)	670
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	670
Ppu21I	YACGTR	1 cut(s)	210
Psp124BI	GAGCTC	1 cut(s)	624
Psp6I	CCWGG	3 cut(s)	431, 513, 873
PspCI	CACGTG	1 cut(s)	210
PspFI	CCCAGC	1 cut(s)	710
PspGI	CCWGG	3 cut(s)	431, 513, 873
PspN4I	GGNNCC	6 cut(s)	6, 84, 234, 296, 439, 871
PspPI	GGNCC	4 cut(s)	4, 64, 160, 833
PsrI	GAACNNNNNNTAC	2 cut(s)	90, 122
PsuI	RGATCY	5 cut(s)	232, 270, 480, 596, 869
RruI	TCGCGA	2 cut(s)	309, 902
RsaI	GTAC	5 cut(s)	84, 99, 225, 242, 439
RsaNI	GTAC	5 cut(s)	83, 98, 224, 241, 438
SacI	GAGCTC	1 cut(s)	624
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	1 cut(s)	792
Sau3AI	GATC	9 cut(s)	198, 217, 232, 270, 310, 480, 596, 869, 883
Sau96I	GGNCC	4 cut(s)	4, 64, 160, 833
SchI	GAGTC	1 cut(s)	670
ScrFI	CCNGG	4 cut(s)	433, 515, 650, 875
SduI	GDGCHC	2 cut(s)	372, 624
SfaNI	GCATC	2 cut(s)	907, 972
SfcI	CTRYAG	1 cut(s)	460
SinI	GGWCC	2 cut(s)	4, 160
SmlI	CTYRAG	1 cut(s)	750
SmoI	CTYRAG	1 cut(s)	750
Sse9I	AATT	4 cut(s)	488, 527, 603, 755
SsiI	CCGC	4 cut(s)	18, 67, 265, 350
SstI	GAGCTC	1 cut(s)	624
StyD4I	CCNGG	4 cut(s)	431, 513, 648, 873
StyI	CCWWGG	1 cut(s)	13
TaaI	ACNGT	5 cut(s)	102, 133, 340, 615, 830
TaiI	ACGT	3 cut(s)	212, 594, 629
TaqI	TCGA	3 cut(s)	499, 882, 980
TasI	AATT	4 cut(s)	488, 527, 603, 755
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	2 cut(s)	358, 977
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	158, 967
TseI	GCWGC	1 cut(s)	791
TspDTI	ATGAA	5 cut(s)	399, 520, 548, 597, 741
TspRI	CASTG	2 cut(s)	158, 967
VpaK11BI	GGWCC	2 cut(s)	4, 160
XapI	RAATTY	4 cut(s)	488, 527, 603, 755
XceI	RCATGY	1 cut(s)	418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.