Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008767

Physical Location & Seq

Genomic Coordinates Reverse (-)

5691121 .. 5693375

Gene Structure 2255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g08550.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGGGGACATCACTGCTCTTGCTTTCTTGCCAAGGAAACGTAGAGGGAAGAACCGGGCGAAAACGACTTCCGGCGCCGCCGTCAGGGAGCGGTGGGAGGTCCATTTTTCCCGCTTCTTCCGCTACCCTCCGGCCCACTCCACGTGTCCTGATCTCGTTCCTCTGTCCACCAGGATCAGAAATCGATCTCCAGCTGGCAACTGGGTCTCCTCCTCCTCTTCCTCCCTGGCTATGCTCCAGCTCGCTCACGATCACTCCTCCTTCGACGTCCTCCTCACCGTCTGCTTCGCCGGCAGAGTTATGGAGGAGCACTATGTTTCCAAGCTGCAGTATGTTTGGCCTCACGTTTCATGCAACCCGGGACTTCCTGCCAGGGGTACCAGAGCCGTGTTTATCAGCTACCGAGACTGCGTGGGCGAGGTTCAGAAGTTCGCGTTGCGATTTTTGTCAGTCGATGAGGCAGAGAGATTTATGAACTCTTTGAAGGCGATCTTTGACATTGAACCTCCTCATACTGACATGGGATCTGAAATTTCAGCACAGTCTGAGTTCATTTATTCGACTGGACCACCCCTCGAACGGGTTTGCACGGACTTTGTCATGGCTCCGGCTCAGACTTATACCACTCAAATACCGCCAAGCTTCGGCAGTGCAGCTCAACAATACTCACAGGCTCAGCAGATGATGCACATTCATAACATTCAGCAAAACTTTCCAGTCGTTCGTCCAGGTTTCACCGCATTGCTGAATGGCTATCACCACGCTGTTGAACAAGCACGATCAACTGTATCAGAGGCGGTAAATCTCAACTCCCATGTCATGCCTCCAAGTTTCACCTCATGGCTTGGGAACTCTCAACCTGTTTTTGAACAAGTGGCAACACAAGAAGTCATTTCACCGGAAGCCAATGTGATATCCCAACTCGCGAGTTACAGGGGAGATGCTTCCTTCCAAGATATGTTGAGTAAGATGGAGAGAGTTATCAGCGAAATGGGGGGTGATTTGACTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

338

Amino Acids

37.57

Weight (kDa)

6.87

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10710 AT1G10710
fragaria_vesca	FvH4_4g25900 FvH4_4g25900 FvH4_4g25900
malus_domestica	MD13G1097800.v1.1 MD13G1097900.v1.1
prunus_persica	Prupe.1G247500_v2.0.a1 Prupe.1G247600_v2.0.a1 Prupe.1G247600_v2.0.a1
pyrus_communis	pycom13g08550
rosa_chinensis	RchiOBHm_Chr4g0433351
rosa_laevigata	RLG00000006761
rosa_multiflora	Rmu_sc0000354.1_g000013 Rmu_sc0000354.1_g000014 Rmu_sc0000759.1_g000014
rosa_roxburghii	Rroxscaffold_5G00374900
rosa_rugosa	Rorug04G0268000
rosa_samantha	Rh4AG322800 Rh4BG330500 Rh4CG345900 Rh4DG327000
rosa_wichuraiana	Rw4G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	377
AccB1I	GGYRCC	2 cut(s)	74, 377
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	2 cut(s)	434, 926
AciI	CCGC	7 cut(s)	78, 91, 112, 121, 635, 738, 797
AclWI	GGATC	2 cut(s)	182, 532
AcsI	RAATTY	1 cut(s)	531
AcvI	CACGTG	1 cut(s)	144
AcyI	GRCGYC	2 cut(s)	75, 267
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	5 cut(s)	84, 374, 579, 580, 644
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	4 cut(s)	484, 503, 770, 869
AjnI	CCWGG	4 cut(s)	170, 225, 371, 727
AluBI	AGCT	6 cut(s)	194, 241, 325, 399, 642, 656
AluI	AGCT	6 cut(s)	194, 241, 325, 399, 642, 656
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	2 cut(s)	211, 399
AlwI	GGATC	2 cut(s)	182, 532
Ama87I	CYCGRG	1 cut(s)	358
AoxI	GGCC	2 cut(s)	132, 338
ApeKI	GCWGC	2 cut(s)	325, 653
ApoI	RAATTY	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	77
AspS9I	GGNCC	3 cut(s)	100, 133, 566
AsuC2I	CCSGG	3 cut(s)	56, 359, 360
AsuHPI	GGTGA	6 cut(s)	268, 727, 749, 826, 888, 1010
AvaI	CYCGRG	1 cut(s)	358
AvaII	GGWCC	2 cut(s)	100, 566
BanI	GGYRCC	2 cut(s)	74, 377
BbrPI	CACGTG	1 cut(s)	144
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	312, 665
BccI	CCATC	1 cut(s)	964
BceAI	ACGGC	2 cut(s)	65, 371
BciT130I	CCWGG	4 cut(s)	172, 227, 373, 729
BcnI	CCSGG	3 cut(s)	56, 359, 360
BcoDI	GTCTC	2 cut(s)	211, 399
BfaI	CTAG	1 cut(s)	1012
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	78
BisI	GCNGC	3 cut(s)	78, 326, 654
BlpI	GCTNAGC	1 cut(s)	675
BlsI	GCNGC	3 cut(s)	79, 327, 655
Bme1390I	CCNGG	7 cut(s)	56, 172, 227, 359, 360, 373, 729
Bme18I	GGWCC	2 cut(s)	100, 566
BmeT110I	CYCGRG	1 cut(s)	358
BmgT120I	GGNCC	3 cut(s)	100, 133, 566
BmiI	GGNNCC	3 cut(s)	76, 379, 606
BmrFI	CCNGG	7 cut(s)	56, 172, 227, 359, 360, 373, 729
BmrI	ACTGGG	1 cut(s)	211
BmsI	GCATC	2 cut(s)	675, 931
BmuI	ACTGGG	1 cut(s)	211
BpmI	CTGGAG	2 cut(s)	174, 221
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuMI	CCSGG	3 cut(s)	56, 359, 360
Bsa29I	ATCGAT	1 cut(s)	184
BsaAI	YACGTR	1 cut(s)	144
BsaHI	GRCGYC	2 cut(s)	75, 267
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	4 cut(s)	32, 225, 358, 372
BsaWI	WCCGGW	1 cut(s)	898
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 239, 269
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 374, 579, 580, 644
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	206, 568, 716
Bse3DI	GCAATG	1 cut(s)	740
BseBI	CCWGG	4 cut(s)	172, 227, 373, 729
BseCI	ATCGAT	1 cut(s)	184
BseDI	CCNNGG	4 cut(s)	32, 225, 358, 372
BseLI	CCNNNNNNNGG	5 cut(s)	84, 374, 579, 580, 644
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	3 cut(s)	537, 626, 689
BseNI	ACTGG	3 cut(s)	206, 568, 716
BseRI	GAGGAG	7 cut(s)	199, 202, 205, 247, 263, 320, 498
BseXI	GCAGC	2 cut(s)	312, 665
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	2 cut(s)	434, 926
BshFI	GGCC	2 cut(s)	134, 340
BshNI	GGYRCC	2 cut(s)	74, 377
BshVI	ATCGAT	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	358
BsiSI	CCGG	7 cut(s)	55, 72, 131, 291, 359, 608, 899
BslFI	GGGAC	2 cut(s)	20, 375
BslI	CCNNNNNNNGG	5 cut(s)	84, 374, 579, 580, 644
BsmAI	GTCTC	2 cut(s)	211, 399
BsmFI	GGGAC	2 cut(s)	20, 375
BsnI	GGCC	2 cut(s)	134, 340
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp68I	TCGCGA	1 cut(s)	926
BspACI	CCGC	7 cut(s)	78, 91, 112, 121, 635, 738, 797
BspANI	GGCC	2 cut(s)	134, 340
BspCNI	CTCAG	3 cut(s)	538, 625, 688
BspDI	ATCGAT	1 cut(s)	184
BspFNI	CGCG	2 cut(s)	434, 926
BspLI	GGNNCC	3 cut(s)	76, 379, 606
BspMAI	CTGCAG	1 cut(s)	330
BspPI	GGATC	2 cut(s)	182, 532
BspT107I	GGYRCC	2 cut(s)	74, 377
BspTNI	GGTCTC	1 cut(s)	211
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	206, 568, 716
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	4 cut(s)	32, 225, 358, 372
BssMI	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
BssNI	GRCGYC	2 cut(s)	75, 267
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	4 cut(s)	172, 227, 373, 729
Bst4CI	ACNGT	3 cut(s)	280, 543, 787
Bst6I	CTCTTC	1 cut(s)	223
BstACI	GRCGYC	2 cut(s)	75, 267
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstBAI	YACGTR	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	196, 243, 292
BstDEI	CTNAG	3 cut(s)	546, 612, 675
BstFNI	CGCG	2 cut(s)	434, 926
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	7 cut(s)	154, 177, 188, 253, 492, 527, 782
BstMAI	GTCTC	2 cut(s)	211, 399
BstMBI	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
BstMWI	GCNNNNNNNGC	3 cut(s)	120, 291, 685
BstNI	CCWGG	4 cut(s)	172, 227, 373, 729
BstSCI	CCNGG	7 cut(s)	54, 170, 225, 357, 358, 371, 727
BstSFI	CTRYAG	1 cut(s)	326
BstUI	CGCG	2 cut(s)	434, 926
BstV1I	GCAGC	2 cut(s)	312, 665
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
Bsu15I	ATCGAT	1 cut(s)	184
BsuRI	GGCC	2 cut(s)	134, 340
BsuTUI	ATCGAT	1 cut(s)	184
BtsI	GCAGTG	2 cut(s)	12, 655
BtsIMutI	CAGTG	2 cut(s)	12, 655
BtuMI	TCGCGA	1 cut(s)	926
Cac8I	GCNNGC	3 cut(s)	196, 243, 292
CfoI	GCGC	1 cut(s)	77
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	3 cut(s)	100, 133, 566
Cfr9I	CCCGGG	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	6 cut(s)	351, 520, 601, 815, 820, 840
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	3 cut(s)	546, 612, 675
DinI	GGCGCC	1 cut(s)	76
DpnI	GATC	7 cut(s)	153, 176, 187, 252, 491, 526, 781
DpnII	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
Eam1104I	CTCTTC	1 cut(s)	223
EarI	CTCTTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	32
Eco31I	GGTCTC	1 cut(s)	211
Eco32I	GATATC	1 cut(s)	915
Eco47I	GGWCC	2 cut(s)	100, 566
Eco72I	CACGTG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	358
EcoRII	CCWGG	4 cut(s)	170, 225, 371, 727
EcoRV	GATATC	1 cut(s)	915
EcoT14I	CCWWGG	1 cut(s)	32
EgeI	GGCGCC	1 cut(s)	76
EheI	GGCGCC	1 cut(s)	76
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	6 cut(s)	354, 523, 604, 818, 823, 843
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	2 cut(s)	20, 375
FatI	CATG	6 cut(s)	350, 519, 600, 814, 819, 839
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	3 cut(s)	78, 326, 654
Fsp4HI	GCNGC	3 cut(s)	78, 326, 654
FspBI	CTAG	1 cut(s)	1012
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	3 cut(s)	78, 326, 654
GsuI	CTGGAG	2 cut(s)	174, 221
HaeII	RGCGCY	1 cut(s)	78
HaeIII	GGCC	2 cut(s)	134, 340
HapII	CCGG	7 cut(s)	55, 72, 131, 291, 359, 608, 899
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	2 cut(s)	75, 267
Hin1II	CATG	6 cut(s)	354, 523, 604, 818, 823, 843
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	1 cut(s)	1006
HpaII	CCGG	7 cut(s)	55, 72, 131, 291, 359, 608, 899
HphI	GGTGA	6 cut(s)	268, 727, 749, 826, 888, 1010
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	6 cut(s)	179, 426, 529, 547, 615, 793
Hpy188III	TCNNGA	3 cut(s)	149, 248, 925
Hpy8I	GTNNAC	1 cut(s)	168
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	3 cut(s)	271, 478, 958
HpyCH4III	ACNGT	3 cut(s)	280, 543, 787
HpyCH4IV	ACGT	4 cut(s)	40, 143, 267, 345
HpyCH4V	TGCA	5 cut(s)	328, 354, 588, 653, 688
HpyF10VI	GCNNNNNNNGC	3 cut(s)	120, 291, 685
HpyF3I	CTNAG	3 cut(s)	546, 612, 675
HpySE526I	ACGT	4 cut(s)	40, 143, 267, 345
Hsp92I	GRCGYC	2 cut(s)	75, 267
Hsp92II	CATG	6 cut(s)	354, 523, 604, 818, 823, 843
HspAI	GCGC	1 cut(s)	75
KasI	GGCGCC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	290
KroNI	GCCGGC	1 cut(s)	292
Kzo9I	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
LmnI	GCTCC	4 cut(s)	88, 240, 307, 610
Lsp1109I	GCAGC	2 cut(s)	312, 665
LweI	GCATC	2 cut(s)	675, 931
MaeI	CTAG	1 cut(s)	1012
MaeII	ACGT	4 cut(s)	40, 143, 267, 345
MaeIII	GTNAC	1 cut(s)	929
MalI	GATC	7 cut(s)	153, 176, 187, 252, 491, 526, 781
MbiI	CCGCTC	1 cut(s)	91
MboI	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
MboII	GAAGA	3 cut(s)	61, 109, 210
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	531
Mly113I	GGCGCC	1 cut(s)	75
MlyI	GAGTC	1 cut(s)	1000
MroNI	GCCGGC	1 cut(s)	290
MspA1I	CMGCKG	1 cut(s)	194
MspI	CCGG	7 cut(s)	55, 72, 131, 291, 359, 608, 899
MspR9I	CCNGG	7 cut(s)	56, 172, 227, 359, 360, 373, 729
MvaI	CCWGG	4 cut(s)	172, 227, 373, 729
MvnI	CGCG	2 cut(s)	434, 926
MwoI	GCNNNNNNNGC	3 cut(s)	120, 291, 685
NaeI	GCCGGC	1 cut(s)	292
NarI	GGCGCC	1 cut(s)	75
NciI	CCSGG	3 cut(s)	56, 359, 360
NdeII	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
NgoMIV	GCCGGC	1 cut(s)	290
NlaIII	CATG	6 cut(s)	354, 523, 604, 818, 823, 843
NlaIV	GGNNCC	3 cut(s)	76, 379, 606
NruI	TCGCGA	1 cut(s)	926
PdiI	GCCGGC	1 cut(s)	292
PflFI	GACNNNGTC	1 cut(s)	596
PkrI	GCNGC	3 cut(s)	79, 327, 655
PleI	GAGTC	1 cut(s)	1000
PluTI	GGCGCC	1 cut(s)	78
PmaCI	CACGTG	1 cut(s)	144
PmlI	CACGTG	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	1000
Ppu21I	YACGTR	1 cut(s)	144
Psp6I	CCWGG	4 cut(s)	170, 225, 371, 727
PspCI	CACGTG	1 cut(s)	144
PspGI	CCWGG	4 cut(s)	170, 225, 371, 727
PspN4I	GGNNCC	3 cut(s)	76, 379, 606
PspPI	GGNCC	3 cut(s)	100, 133, 566
PstI	CTGCAG	1 cut(s)	330
PsuI	RGATCY	1 cut(s)	524
PsyI	GACNNNGTC	1 cut(s)	596
PvuII	CAGCTG	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	926
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
SatI	GCNGC	3 cut(s)	78, 326, 654
Sau3AI	GATC	7 cut(s)	151, 174, 185, 250, 489, 524, 779
Sau96I	GGNCC	3 cut(s)	100, 133, 566
SchI	GAGTC	1 cut(s)	1000
ScrFI	CCNGG	7 cut(s)	56, 172, 227, 359, 360, 373, 729
SduI	GDGCHC	1 cut(s)	312
SfaNI	GCATC	2 cut(s)	675, 931
SfcI	CTRYAG	1 cut(s)	326
SfoI	GGCGCC	1 cut(s)	76
SinI	GGWCC	2 cut(s)	100, 566
SmaI	CCCGGG	1 cut(s)	360
Sse9I	AATT	1 cut(s)	531
SsiI	CCGC	7 cut(s)	78, 91, 112, 121, 635, 738, 797
SspDI	GGCGCC	1 cut(s)	74
SspMI	CTAG	1 cut(s)	1012
StyD4I	CCNGG	7 cut(s)	54, 170, 225, 357, 358, 371, 727
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	3 cut(s)	280, 543, 787
TaiI	ACGT	4 cut(s)	43, 146, 270, 348
TaqI	TCGA	5 cut(s)	184, 264, 453, 560, 576
TasI	AATT	1 cut(s)	531
TauI	GCSGC	1 cut(s)	80
TscAI	CASTG	2 cut(s)	19, 655
TseI	GCWGC	2 cut(s)	325, 653
TspDTI	ATGAA	4 cut(s)	339, 488, 541, 683
TspGWI	ACGGA	1 cut(s)	605
TspMI	CCCGGG	1 cut(s)	358
TspRI	CASTG	2 cut(s)	19, 655
Tth111I	GACNNNGTC	1 cut(s)	596
VpaK11BI	GGWCC	2 cut(s)	100, 566
XapI	RAATTY	1 cut(s)	531
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XmaI	CCCGGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	1012
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.