Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008767

Physical Location & Seq

Genomic Coordinates Reverse (-)

49580361 .. 49583867

Gene Structure 3507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG330500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGCGGGCACTCTGGCTTTGATACCAAGCAATCCGCCGGTGACGTCATCGTCTCTGAGCTCCATCCGAGAGCGGTGGGAGGTCGAGTTCGCTCGCTTCTTCGTCTACCCTCCGCTCACCTCCACGTGTCCAGATCTCGTCCCTCTGCCTATGAAGGTCAGGAATCGACGGCCGGTCGGTAACTGGATCTCCACCGCCTCCACCGCCATGCTTCAACTCATTTATGACCACTCCAGCTCCGACGTCATCCTCACCGTCTGCTCCAGCGGCAAGATCATGGAGGAGCACTACGTGTCGAAGCTACTCTTTGCCTGGCCTCAGGTTGCATGCATGTCTGGATTTCCTGCCAGGGGAAGTAGAGCCATCTTTGCCAGCTACAGAGATTCTTTGGGCCAGATCCAGAAATTTGCTATTCGATTTCTGTCAGTCAATGAAGCAGAGAAGTTCATAACTCTTATAAAGGAGATTTTCAAGGAAGGGAGGGATATTCAACCTCTTAATACTGACTACGGATCTGAAATTTCATCACAATCTGAGTTCATGTCTTCTAATAGACCTCTAAACAGAACTTCCAAGGACTTGGTTGTCACGACTCCTGTTCACAGTCATTCTCCTCAAATACCACCAAGCTTAATGATGGCTTATACTCCTCAAATGTCACCAAGCTTAATGAAGGATTATACACCTCAAATGTCACCAACCTGGAAACATGAAGCAGCTCAACACAGACAAACTCAGCACATATCACCTATTCAGAACTTTCAGAGCTACTTTGCTGCCTTTCCTCCTAGTTTCACCTCATTAGTGTCCAACTGTCAACCTCTGGTTGAACAAGGTTGGTATTTTGGTTGTCTCAGCACTAAACAGGAAACCTTTCTCCGATTCCTTATGATGACCCCTTTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0044424 GO:0044464 GO:0045132 GO:0045143 GO:0048285 GO:0051276 GO:0051321 GO:0061982 GO:0070192 GO:0071840 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

302

Amino Acids

34.13

Weight (kDa)

8.78

Isoelectric Point (pI)

61.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_PHS1	PF25349	24 - 166	7.5e-63	Poor homologous synapsis protein PH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008767)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10710 AT1G10710
fragaria_vesca	FvH4_4g25900 FvH4_4g25900 FvH4_4g25900
malus_domestica	MD13G1097800.v1.1 MD13G1097900.v1.1
prunus_persica	Prupe.1G247500_v2.0.a1 Prupe.1G247600_v2.0.a1 Prupe.1G247600_v2.0.a1
pyrus_communis	pycom13g08550
rosa_chinensis	RchiOBHm_Chr4g0433351
rosa_laevigata	RLG00000006761
rosa_multiflora	Rmu_sc0000354.1_g000013 Rmu_sc0000354.1_g000014 Rmu_sc0000759.1_g000014
rosa_roxburghii	Rroxscaffold_5G00374900
rosa_rugosa	Rorug04G0268000
rosa_samantha	Rh4AG322800 Rh4BG330500 Rh4CG345900 Rh4DG327000
rosa_wichuraiana	Rw4G027940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AasI	GACNNNNNNGTC	2 cut(s)	49, 584
AatII	GACGTC	2 cut(s)	47, 246
AccBSI	CCGCTC	2 cut(s)	73, 115
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	7 cut(s)	5, 35, 73, 113, 195, 204, 267
AclWI	GGATC	3 cut(s)	194, 391, 520
AcoI	YGGCCR	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	404, 519
AcvI	CACGTG	1 cut(s)	126
AcyI	GRCGYC	2 cut(s)	44, 243
AdeI	CACNNNGTG	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	2 cut(s)	125, 291
AgsI	TTSAA	4 cut(s)	215, 472, 491, 830
AhdI	GACNNNNNGTC	1 cut(s)	173
AjnI	CCWGG	3 cut(s)	311, 347, 701
AloI	GAACNNNNNNTCC	2 cut(s)	71, 103
AluBI	AGCT	8 cut(s)	60, 237, 301, 375, 630, 666, 719, 768
AluI	AGCT	8 cut(s)	60, 237, 301, 375, 630, 666, 719, 768
Alw21I	GWGCWC	2 cut(s)	62, 288
Alw26I	GTCTC	2 cut(s)	57, 857
AlwI	GGATC	3 cut(s)	194, 391, 520
AoxI	GGCC	3 cut(s)	170, 314, 391
ApeKI	GCWGC	2 cut(s)	716, 776
ApoI	RAATTY	2 cut(s)	404, 519
Asp700I	GAANNNNTTC	1 cut(s)	873
AspS9I	GGNCC	1 cut(s)	391
AsuHPI	GGTGA	7 cut(s)	52, 109, 244, 651, 687, 738, 787
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	11
BanII	GRGCYC	1 cut(s)	62
BbrPI	CACGTG	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	62, 288
BbvI	GCAGC	2 cut(s)	728, 763
BccI	CCATC	3 cut(s)	71, 371, 631
BceAI	ACGGC	1 cut(s)	185
BciT130I	CCWGG	3 cut(s)	313, 349, 703
BcoDI	GTCTC	2 cut(s)	57, 857
BfaI	CTAG	1 cut(s)	789
BfmI	CTRYAG	1 cut(s)	376
BglII	AGATCT	1 cut(s)	133
BisI	GCNGC	3 cut(s)	268, 717, 777
BlsI	GCNGC	3 cut(s)	269, 718, 778
Bme1390I	CCNGG	3 cut(s)	313, 349, 703
BmeRI	GACNNNNNGTC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	391
BmrFI	CCNGG	3 cut(s)	313, 349, 703
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	217, 247
BsaAI	YACGTR	2 cut(s)	126, 292
BsaHI	GRCGYC	2 cut(s)	44, 243
BsaJI	CCNNGG	2 cut(s)	348, 573
BsaXI	ACNNNNNCTCC	6 cut(s)	71, 101, 173, 203, 221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse118I	RCCGGY	2 cut(s)	37, 172
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	318
BseBI	CCWGG	3 cut(s)	313, 349, 703
BseDI	CCNNGG	2 cut(s)	348, 573
BseGI	GGATG	2 cut(s)	63, 246
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	5 cut(s)	47, 332, 525, 749, 868
BseNI	ACTGG	1 cut(s)	188
BseRI	GAGGAG	3 cut(s)	296, 603, 639
BseSI	GKGCMC	1 cut(s)	11
BseX3I	CGGCCG	1 cut(s)	170
BseXI	GCAGC	2 cut(s)	728, 763
Bsh1285I	CGRYCG	2 cut(s)	173, 177
BshFI	GGCC	3 cut(s)	172, 316, 393
BsiEI	CGRYCG	2 cut(s)	173, 177
BsiHKAI	GWGCWC	2 cut(s)	62, 288
BsiSI	CCGG	2 cut(s)	38, 173
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	2 cut(s)	57, 857
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	3 cut(s)	172, 316, 393
Bsp1286I	GDGCHC	3 cut(s)	11, 62, 288
Bsp143I	GATC	5 cut(s)	133, 186, 273, 396, 512
BspACI	CCGC	7 cut(s)	5, 35, 73, 113, 195, 204, 267
BspANI	GGCC	3 cut(s)	172, 316, 393
BspCNI	CTCAG	5 cut(s)	48, 331, 526, 748, 867
BspPI	GGATC	3 cut(s)	194, 391, 520
BsrBI	CCGCTC	2 cut(s)	73, 115
BsrFI	RCCGGY	2 cut(s)	37, 172
BsrI	ACTGG	1 cut(s)	188
BssAI	RCCGGY	2 cut(s)	37, 172
BssECI	CCNNGG	2 cut(s)	348, 573
BssMI	GATC	5 cut(s)	133, 186, 273, 396, 512
BssNI	GRCGYC	2 cut(s)	44, 243
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	3 cut(s)	313, 349, 703
Bst4CI	ACNGT	3 cut(s)	256, 605, 815
BstACI	GRCGYC	2 cut(s)	44, 243
BstBAI	YACGTR	2 cut(s)	126, 292
BstC8I	GCNNGC	4 cut(s)	7, 94, 328, 373
BstDEI	CTNAG	5 cut(s)	56, 318, 534, 735, 854
BstF5I	GGATG	2 cut(s)	63, 246
BstKTI	GATC	5 cut(s)	136, 189, 276, 399, 515
BstMAI	GTCTC	2 cut(s)	57, 857
BstMBI	GATC	5 cut(s)	133, 186, 273, 396, 512
BstMCI	CGRYCG	2 cut(s)	173, 177
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 267, 368
BstNI	CCWGG	3 cut(s)	313, 349, 703
BstNSI	RCATGY	2 cut(s)	330, 334
BstSCI	CCNGG	3 cut(s)	311, 347, 701
BstSFI	CTRYAG	1 cut(s)	376
BstSLI	GKGCMC	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	728, 763
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	4 cut(s)	133, 186, 396, 512
BstXI	CCANNNNNNTGG	1 cut(s)	580
BstYI	RGATCY	4 cut(s)	133, 186, 396, 512
BstZI	CGGCCG	1 cut(s)	170
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	3 cut(s)	172, 316, 393
BtsCI	GGATG	2 cut(s)	63, 246
Cac8I	GCNNGC	4 cut(s)	7, 94, 328, 373
Cfr10I	RCCGGY	2 cut(s)	37, 172
Cfr13I	GGNCC	1 cut(s)	391
CviAII	CATG	7 cut(s)	208, 277, 327, 331, 541, 710, 906
DdeI	CTNAG	5 cut(s)	56, 318, 534, 735, 854
DpnI	GATC	5 cut(s)	135, 188, 275, 398, 514
DpnII	GATC	5 cut(s)	133, 186, 273, 396, 512
DraIII	CACNNNGTG	1 cut(s)	292
DrdI	GACNNNNNNGTC	2 cut(s)	49, 584
DriI	GACNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	2 cut(s)	49, 584
EaeI	YGGCCR	1 cut(s)	170
EagI	CGGCCG	1 cut(s)	170
Eam1105I	GACNNNNNGTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	24
Ecl136II	GAGCTC	1 cut(s)	60
EclXI	CGGCCG	1 cut(s)	170
Eco130I	CCWWGG	1 cut(s)	573
Eco24I	GRGCYC	1 cut(s)	62
Eco52I	CGGCCG	1 cut(s)	170
Eco53kI	GAGCTC	1 cut(s)	60
Eco72I	CACGTG	1 cut(s)	126
Eco81I	CCTNAGG	1 cut(s)	318
EcoICRI	GAGCTC	1 cut(s)	60
EcoRII	CCWGG	3 cut(s)	311, 347, 701
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	62
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	7 cut(s)	211, 280, 330, 334, 544, 713, 909
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	7 cut(s)	207, 276, 326, 330, 540, 709, 905
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	268, 717, 777
FokI	GGATG	2 cut(s)	50, 233
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	3 cut(s)	268, 717, 777
FspBI	CTAG	1 cut(s)	789
GluI	GCNGC	3 cut(s)	268, 717, 777
GsuI	CTGGAG	2 cut(s)	217, 247
HaeIII	GGCC	3 cut(s)	172, 316, 393
HapII	CCGG	2 cut(s)	38, 173
Hin1I	GRCGYC	2 cut(s)	44, 243
Hin1II	CATG	7 cut(s)	211, 280, 330, 334, 544, 713, 909
HincII	GTYRAC	1 cut(s)	818
HindII	GTYRAC	1 cut(s)	818
HindIII	AAGCTT	2 cut(s)	628, 664
HinfI	GANTC	4 cut(s)	163, 383, 592, 882
HpaII	CCGG	2 cut(s)	38, 173
HphI	GGTGA	7 cut(s)	52, 109, 244, 651, 687, 738, 787
Hpy166II	GTNNAC	3 cut(s)	106, 601, 818
Hpy188I	TCNGA	8 cut(s)	57, 68, 241, 517, 535, 756, 765, 881
Hpy188III	TCNNGA	5 cut(s)	131, 160, 336, 400, 589
Hpy8I	GTNNAC	3 cut(s)	106, 601, 818
Hpy99I	CGWCG	2 cut(s)	171, 245
HpyAV	CCTTC	3 cut(s)	148, 470, 667
HpyCH4III	ACNGT	3 cut(s)	256, 605, 815
HpyCH4IV	ACGT	4 cut(s)	44, 125, 243, 291
HpyCH4V	TGCA	2 cut(s)	326, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 267, 368
HpyF3I	CTNAG	5 cut(s)	56, 318, 534, 735, 854
HpySE526I	ACGT	4 cut(s)	44, 125, 243, 291
Hsp92I	GRCGYC	2 cut(s)	44, 243
Hsp92II	CATG	7 cut(s)	211, 280, 330, 334, 544, 713, 909
Kzo9I	GATC	5 cut(s)	133, 186, 273, 396, 512
LmnI	GCTCC	4 cut(s)	65, 242, 266, 283
Lsp1109I	GCAGC	2 cut(s)	728, 763
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	4 cut(s)	44, 125, 243, 291
MaeIII	GTNAC	5 cut(s)	40, 179, 586, 657, 693
MalI	GATC	5 cut(s)	135, 188, 275, 398, 514
MbiI	CCGCTC	2 cut(s)	73, 115
MboI	GATC	5 cut(s)	133, 186, 273, 396, 512
MboII	GAAGA	2 cut(s)	91, 537
MflI	RGATCY	4 cut(s)	133, 186, 396, 512
MhlI	GDGCHC	3 cut(s)	11, 62, 288
MluCI	AATT	2 cut(s)	404, 519
MlyI	GAGTC	1 cut(s)	586
MmeI	TCCRAC	2 cut(s)	264, 834
Mph1103I	ATGCAT	1 cut(s)	332
MroXI	GAANNNNTTC	1 cut(s)	873
MseI	TTAA	3 cut(s)	498, 632, 668
MslI	CAYNNNNRTG	1 cut(s)	206
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	38, 173
MspR9I	CCNGG	3 cut(s)	313, 349, 703
MvaI	CCWGG	3 cut(s)	313, 349, 703
MwoI	GCNNNNNNNGC	3 cut(s)	203, 267, 368
NdeII	GATC	5 cut(s)	133, 186, 273, 396, 512
NlaIII	CATG	7 cut(s)	211, 280, 330, 334, 544, 713, 909
NmuCI	GTSAC	4 cut(s)	40, 586, 657, 693
NsiI	ATGCAT	1 cut(s)	332
NspI	RCATGY	2 cut(s)	330, 334
PaeI	GCATGC	1 cut(s)	330
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	3 cut(s)	163, 383, 882
PkrI	GCNGC	3 cut(s)	269, 718, 778
PleI	GAGTC	1 cut(s)	586
PmaCI	CACGTG	1 cut(s)	126
PmlI	CACGTG	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	586
Ppu21I	YACGTR	2 cut(s)	126, 292
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	62
Psp6I	CCWGG	3 cut(s)	311, 347, 701
PspCI	CACGTG	1 cut(s)	126
PspGI	CCWGG	3 cut(s)	311, 347, 701
PspPI	GGNCC	1 cut(s)	391
PsuI	RGATCY	4 cut(s)	133, 186, 396, 512
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	62
SaqAI	TTAA	3 cut(s)	498, 632, 668
SatI	GCNGC	3 cut(s)	268, 717, 777
Sau3AI	GATC	5 cut(s)	133, 186, 273, 396, 512
Sau96I	GGNCC	1 cut(s)	391
SchI	GAGTC	1 cut(s)	586
ScrFI	CCNGG	3 cut(s)	313, 349, 703
SduI	GDGCHC	3 cut(s)	11, 62, 288
SfcI	CTRYAG	1 cut(s)	376
SgrAI	CRCCGGYG	1 cut(s)	37
SmiMI	CAYNNNNRTG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	330
Sse9I	AATT	2 cut(s)	404, 519
SsiI	CCGC	7 cut(s)	5, 35, 73, 113, 195, 204, 267
SspMI	CTAG	1 cut(s)	789
SstI	GAGCTC	1 cut(s)	62
StyD4I	CCNGG	3 cut(s)	311, 347, 701
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	3 cut(s)	256, 605, 815
TaiI	ACGT	4 cut(s)	47, 128, 246, 294
TaqI	TCGA	4 cut(s)	84, 166, 296, 415
TasI	AATT	2 cut(s)	404, 519
TauI	GCSGC	1 cut(s)	270
TfiI	GAWTC	3 cut(s)	163, 383, 882
Tru1I	TTAA	3 cut(s)	498, 632, 668
Tru9I	TTAA	3 cut(s)	498, 632, 668
TseFI	GTSAC	4 cut(s)	40, 586, 657, 693
TseI	GCWGC	2 cut(s)	716, 776
Tsp45I	GTSAC	4 cut(s)	40, 586, 657, 693
TspDTI	ATGAA	7 cut(s)	167, 436, 447, 513, 529, 686, 726
TspGWI	ACGGA	1 cut(s)	525
XapI	RAATTY	2 cut(s)	404, 519
XceI	RCATGY	2 cut(s)	330, 334
XmiI	GTMKAC	1 cut(s)	105
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	1 cut(s)	789
ZraI	GACGTC	2 cut(s)	45, 244
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.