AT1G11700

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013122
Physical Location & Seq
Forward (+)
3945584 .. 3946757
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11700.1

Sequence Viewer

Length: 606 bp
ATGGCAAGAGGTCGAAAGCTGACGATGAGCCAGAGCGAGAGGTACCTAGGAAGCAGCTATAGTTACGGTGACAGTAACGGAAACTCCGCCACCGACGAATCAGAGCTCACGGAGGAGGACATCTGGTCACACGCCGTCGATCACAGCCCGGAGATGCTGGAATCTCATGGAGCGTGGAACACACGCGATGCTGTGGTGAGGAATGGGCGCGTGGGTGGTGGTTTGTCGCTGGCGTTTGAGGACGCGTCATCTTCGCCGAGGATCGTGCACCAGATACGTGGCGGAGGAGAAGGAGGAGGAGGTGGTGGAGGAGGAGGAAGAGTTGAGAGGCAGTTGGCGTCGTCGGCTCCGGTGAACGTGCCGGATTGGAGTAAGATATACCGAGTCAACTCGGTTGAGTCGATACACGAGTCTGATGAAGAGGAGGAGGAAGATTCCGGGATGATGATGCCGCCGCATGAGTACTTGGCGAAGAGCCAACAGCGACGGAGCAGAAAATCTGGCGGCGGTGGCTCGGTGTTTGAAGGAGTTGGAAGAACTCTTAAAGGACGAGAATTAAGGCGCGTTCGAGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

201

Amino Acids

21.78

Weight (kDa)

5.57

Isoelectric Point (pI)

65.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 34 - 200 8.8e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AccII CGCG 5 cut(s) 186, 210, 245, 564, 575
AciI CCGC 6 cut(s) 87, 282, 452, 455, 504, 507
AclWI GGATC 1 cut(s) 269
AcyI GRCGYC 1 cut(s) 338
AfaI GTAC 2 cut(s) 44, 464
AflIII ACRYGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 524
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 3 cut(s) 19, 57, 106
AluI AGCT 3 cut(s) 19, 57, 106
Alw21I GWGCWC 2 cut(s) 108, 270
Alw26I GTCTC 1 cut(s) 564
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 1 cut(s) 269
ApaLI GTGCAC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 54
Asp718I GGTACC 1 cut(s) 42
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 2 cut(s) 210, 564
AsuC2I CCSGG 2 cut(s) 149, 439
AsuHPI GGTGA 3 cut(s) 80, 208, 364
AvrII CCTAGG 1 cut(s) 46
BaeGI GKGCMC 1 cut(s) 270
BaeI ACNNNNGTAYC 2 cut(s) 395, 428
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 108
BauI CACGAG 1 cut(s) 407
Bbv12I GWGCWC 2 cut(s) 108, 270
BbvI GCAGC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 247, 281
BcnI CCSGG 2 cut(s) 149, 439
BcoDI GTCTC 1 cut(s) 564
BfaI CTAG 1 cut(s) 47
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 4 cut(s) 55, 452, 455, 505
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 4 cut(s) 56, 453, 456, 506
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 2 cut(s) 149, 439
BmeRI GACNNNNNGTC 1 cut(s) 124
BmiI GGNNCC 3 cut(s) 44, 348, 584
BmrFI CCNGG 2 cut(s) 149, 439
BmsI GCATC 3 cut(s) 144, 178, 438
BpuMI CCSGG 2 cut(s) 149, 439
BsaAI YACGTR 1 cut(s) 278
BsaHI GRCGYC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 46, 257
BsaWI WCCGGW 1 cut(s) 349
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 306, 336
BseDI CCNNGG 2 cut(s) 46, 257
BseGI GGATG 1 cut(s) 447
BseRI GAGGAG 8 cut(s) 128, 300, 309, 312, 324, 327, 437, 440
BseSI GKGCMC 1 cut(s) 270
BseXI GCAGC 1 cut(s) 66
Bsh1236I CGCG 5 cut(s) 186, 210, 245, 564, 575
BshNI GGYRCC 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 108, 270
BsiSI CCGG 4 cut(s) 149, 350, 362, 438
BsmAI GTCTC 1 cut(s) 564
BsmBI CGTCTC 1 cut(s) 564
Bsp1286I GDGCHC 2 cut(s) 108, 270
Bsp143I GATC 2 cut(s) 139, 261
BspACI CCGC 6 cut(s) 87, 282, 452, 455, 504, 507
BspFNI CGCG 5 cut(s) 186, 210, 245, 564, 575
BspLI GGNNCC 3 cut(s) 44, 348, 584
BspPI GGATC 1 cut(s) 269
BspQI GCTCTTC 1 cut(s) 467
BspT107I GGYRCC 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 46, 257
BssMI GATC 2 cut(s) 139, 261
BssNI GRCGYC 1 cut(s) 338
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 68, 74
Bst6I CTCTTC 3 cut(s) 313, 414, 467
BstACI GRCGYC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 231
BstF5I GGATG 1 cut(s) 447
BstFNI CGCG 5 cut(s) 186, 210, 245, 564, 575
BstHHI GCGC 2 cut(s) 210, 564
BstKTI GATC 2 cut(s) 142, 264
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 2 cut(s) 139, 261
BstMWI GCNNNNNNNGC 2 cut(s) 344, 510
BstSCI CCNGG 2 cut(s) 147, 437
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 5 cut(s) 186, 210, 245, 564, 575
BstV1I GCAGC 1 cut(s) 66
BstXI CCANNNNNNTGG 1 cut(s) 278
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 447
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 2 cut(s) 210, 564
CseI GACGC 4 cut(s) 234, 251, 327, 581
Csp6I GTAC 2 cut(s) 43, 463
CviAII CATG 2 cut(s) 167, 458
CviQI GTAC 2 cut(s) 43, 463
DpnI GATC 2 cut(s) 141, 263
DpnII GATC 2 cut(s) 139, 261
DriI GACNNNNNGTC 1 cut(s) 124
Eam1104I CTCTTC 3 cut(s) 313, 414, 467
Eam1105I GACNNNNNGTC 1 cut(s) 124
EarI CTCTTC 3 cut(s) 313, 414, 467
EciI GGCGGA 2 cut(s) 76, 297
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 108
Eco53kI GAGCTC 1 cut(s) 106
EcoICRI GAGCTC 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 46
Esp3I CGTCTC 1 cut(s) 564
FaeI CATG 2 cut(s) 170, 461
FaiI YATR 4 cut(s) 60, 168, 379, 459
FatI CATG 2 cut(s) 166, 457
Fnu4HI GCNGC 4 cut(s) 55, 452, 455, 505
FokI GGATG 1 cut(s) 454
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 55, 452, 455, 505
FspBI CTAG 1 cut(s) 47
GlaI GCGC 2 cut(s) 209, 563
GluI GCNGC 4 cut(s) 55, 452, 455, 505
HapII CCGG 4 cut(s) 149, 350, 362, 438
HgaI GACGC 4 cut(s) 234, 251, 327, 581
HhaI GCGC 2 cut(s) 210, 564
Hin1I GRCGYC 1 cut(s) 338
Hin1II CATG 2 cut(s) 170, 461
Hin6I GCGC 2 cut(s) 208, 562
HinP1I GCGC 2 cut(s) 208, 562
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 6 cut(s) 98, 161, 384, 398, 410, 434
HpaII CCGG 4 cut(s) 149, 350, 362, 438
HphI GGTGA 3 cut(s) 80, 208, 364
Hpy166II GTNNAC 3 cut(s) 268, 355, 388
Hpy188I TCNGA 2 cut(s) 103, 415
Hpy188III TCNNGA 1 cut(s) 569
Hpy8I GTNNAC 3 cut(s) 268, 355, 388
Hpy99I CGWCG 5 cut(s) 98, 140, 343, 346, 489
HpyAV CCTTC 2 cut(s) 284, 518
HpyCH4III ACNGT 2 cut(s) 68, 74
HpyCH4IV ACGT 2 cut(s) 277, 357
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 510
HpySE526I ACGT 2 cut(s) 277, 357
Hsp92I GRCGYC 1 cut(s) 338
Hsp92II CATG 2 cut(s) 170, 461
HspAI GCGC 2 cut(s) 208, 562
KpnI GGTACC 1 cut(s) 46
Kzo9I GATC 2 cut(s) 139, 261
LguI GCTCTTC 1 cut(s) 467
LmnI GCTCC 4 cut(s) 170, 352, 489, 582
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 3 cut(s) 144, 178, 438
MaeI CTAG 1 cut(s) 47
MaeII ACGT 2 cut(s) 277, 357
MaeIII GTNAC 4 cut(s) 62, 68, 74, 126
MalI GATC 2 cut(s) 141, 263
MboI GATC 2 cut(s) 139, 261
MboII GAAGA 6 cut(s) 243, 330, 431, 443, 484, 546
MhlI GDGCHC 2 cut(s) 108, 270
MluCI AATT 1 cut(s) 554
MluI ACGCGT 1 cut(s) 243
MlyI GAGTC 3 cut(s) 393, 407, 419
MmeI TCCRAC 1 cut(s) 511
MseI TTAA 2 cut(s) 543, 557
MspI CCGG 4 cut(s) 149, 350, 362, 438
MspR9I CCNGG 2 cut(s) 149, 439
MvnI CGCG 5 cut(s) 186, 210, 245, 564, 575
MwoI GCNNNNNNNGC 2 cut(s) 344, 510
NciI CCSGG 2 cut(s) 149, 439
NdeII GATC 2 cut(s) 139, 261
NlaIII CATG 2 cut(s) 170, 461
NlaIV GGNNCC 3 cut(s) 44, 348, 584
NmeAIII GCCGAG 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 68, 126
PciSI GCTCTTC 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 398
PfeI GAWTC 3 cut(s) 98, 161, 434
PfoI TCCNGGA 1 cut(s) 437
PkrI GCNGC 4 cut(s) 56, 453, 456, 506
PleI GAGTC 3 cut(s) 392, 406, 418
PpsI GAGTC 3 cut(s) 392, 406, 418
Ppu21I YACGTR 1 cut(s) 278
Psp124BI GAGCTC 1 cut(s) 108
PspN4I GGNNCC 3 cut(s) 44, 348, 584
RsaI GTAC 2 cut(s) 44, 464
RsaNI GTAC 2 cut(s) 43, 463
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 467
SaqAI TTAA 2 cut(s) 543, 557
SatI GCNGC 4 cut(s) 55, 452, 455, 505
Sau3AI GATC 2 cut(s) 139, 261
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 3 cut(s) 393, 407, 419
ScrFI CCNGG 2 cut(s) 149, 439
SduI GDGCHC 2 cut(s) 108, 270
SetI ASST 9 cut(s) 13, 21, 44, 48, 59, 108, 280, 304, 360
SfaNI GCATC 3 cut(s) 144, 178, 438
SfcI CTRYAG 1 cut(s) 58
Sse9I AATT 1 cut(s) 554
SsiI CCGC 6 cut(s) 87, 282, 452, 455, 504, 507
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 147, 437
StyI CCWWGG 1 cut(s) 46
TaaI ACNGT 2 cut(s) 68, 74
TaiI ACGT 2 cut(s) 280, 360
TaqI TCGA 4 cut(s) 13, 138, 401, 568
TasI AATT 1 cut(s) 554
TatI WGTACW 1 cut(s) 462
TauI GCSGC 3 cut(s) 454, 457, 507
TfiI GAWTC 3 cut(s) 98, 161, 434
Tru1I TTAA 2 cut(s) 543, 557
Tru9I TTAA 2 cut(s) 543, 557
TseFI GTSAC 2 cut(s) 68, 126
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 2 cut(s) 68, 126
TspDTI ATGAA 1 cut(s) 432
TspGWI ACGGA 3 cut(s) 93, 125, 502
VneI GTGCAC 1 cut(s) 266
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.