Prupe.4G021400_v2.0.a1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013122
Physical Location & Seq
Reverse (-)
1010549 .. 1012299
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G021400.1

Sequence Viewer

Length: 498 bp
ATGGCGAAGGGCCGGAAACTGACGCAGAGCCGCAGCGAACGGTTGCTCGGAAGCTACAGCAGCTACAGCCACGCTCATGACTCGCCGGAGCTCGGCGAAGACGACGTCTGGTCGACGGTGAACACCGTGGACGAAAGGGAAGACCCCGAAATCGAAAATTCGCACGGAGATTGGAGCCCACGCGCCTCCGCTGAGACAAACGGGGGCGTCTCGTCGAGGAGGAGCCGCCGAATTGCACGGGAAGACGGAAACGTGGGTGGCCTGTCATTGGCTTTTGACGATTCCGGAAAAACGGCGTCATCACCTAGGATCGTGCACCAGTTCCGCGGACACGACAGCGTGGCGTCCCCACGTGTGCACCACATGGCCACGTCAGCTCCCGTGAACGTGCCGGACTGGAGCAAGATTCTCCGGGTCGACTCGGTGGACTCCCTGTACGAGTTGGACGAGAGTTGGATGGGAATGACTCGGAGATTATCCCGCCACACGAGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

166

Amino Acids

18.3

Weight (kDa)

6.05

Isoelectric Point (pI)

62.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 108
AccI GTMKAC 2 cut(s) 113, 417
AccII CGCG 2 cut(s) 183, 327
AccIII TCCGGA 1 cut(s) 284
AciI CCGC 6 cut(s) 31, 189, 226, 325, 327, 481
AclWI GGATC 1 cut(s) 317
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 1 cut(s) 157
AcvI CACGTG 1 cut(s) 353
AcyI GRCGYC 4 cut(s) 105, 207, 296, 344
AfaI GTAC 2 cut(s) 437, 493
AfiI CCNNNNNNNGG 2 cut(s) 92, 268
AflIII ACRYGT 1 cut(s) 352
AhdI GACNNNNNGTC 1 cut(s) 109
AjiI CACGTC 1 cut(s) 372
AluBI AGCT 4 cut(s) 54, 63, 91, 377
AluI AGCT 4 cut(s) 54, 63, 91, 377
Alw21I GWGCWC 3 cut(s) 93, 318, 360
Alw26I GTCTC 2 cut(s) 188, 214
Alw44I GTGCAC 2 cut(s) 314, 356
AlwI GGATC 1 cut(s) 317
Aor13HI TCCGGA 1 cut(s) 284
AoxI GGCC 3 cut(s) 10, 259, 366
ApaLI GTGCAC 2 cut(s) 314, 356
ApeKI GCWGC 2 cut(s) 33, 60
ApoI RAATTY 1 cut(s) 157
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspA2I CCTAGG 1 cut(s) 305
AspLEI GCGC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 10
AsuC2I CCSGG 1 cut(s) 413
AsuHPI GGTGA 2 cut(s) 130, 294
AvrII CCTAGG 1 cut(s) 305
BaeGI GKGCMC 2 cut(s) 318, 360
BaeI ACNNNNGTAYC 1 cut(s) 475
BalI TGGCCA 1 cut(s) 368
BanII GRGCYC 2 cut(s) 93, 179
BauI CACGAG 1 cut(s) 487
BbrPI CACGTG 1 cut(s) 353
BbsI GAAGAC 3 cut(s) 105, 147, 249
Bbv12I GWGCWC 3 cut(s) 93, 318, 360
BbvI GCAGC 2 cut(s) 45, 72
BccI CCATC 1 cut(s) 451
BceAI ACGGC 1 cut(s) 309
BcnI CCSGG 1 cut(s) 413
BcoDI GTCTC 2 cut(s) 188, 214
BfaI CTAG 2 cut(s) 306, 496
BfmI CTRYAG 2 cut(s) 55, 64
BisI GCNGC 4 cut(s) 31, 34, 61, 226
BlnI CCTAGG 1 cut(s) 305
BlsI GCNGC 4 cut(s) 32, 35, 62, 227
Bme1390I CCNGG 1 cut(s) 413
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 2 cut(s) 176, 224
BmrFI CCNGG 1 cut(s) 413
BpiI GAAGAC 3 cut(s) 105, 147, 249
BpmI CTGGAG 1 cut(s) 418
BpuMI CCSGG 1 cut(s) 413
BsaAI YACGTR 1 cut(s) 353
BsaHI GRCGYC 4 cut(s) 105, 207, 296, 344
BsaJI CCNNGG 3 cut(s) 126, 305, 325
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 268
Bse1I ACTGG 2 cut(s) 319, 401
BseAI TCCGGA 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 126, 305, 325
BseGI GGATG 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 92, 268
BseMII CTCAG 1 cut(s) 183
BseNI ACTGG 2 cut(s) 319, 401
BseRI GAGGAG 2 cut(s) 232, 235
BseSI GKGCMC 2 cut(s) 318, 360
BseXI GCAGC 2 cut(s) 45, 72
Bsh1236I CGCG 2 cut(s) 183, 327
BshFI GGCC 3 cut(s) 12, 261, 368
BsiHKAI GWGCWC 3 cut(s) 93, 318, 360
BsiSI CCGG 5 cut(s) 13, 86, 285, 392, 412
BslFI GGGAC 1 cut(s) 331
BslI CCNNNNNNNGG 2 cut(s) 92, 268
BsmAI GTCTC 2 cut(s) 188, 214
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 331
BsnI GGCC 3 cut(s) 12, 261, 368
Bsp1286I GDGCHC 4 cut(s) 93, 179, 318, 360
Bsp13I TCCGGA 1 cut(s) 284
Bsp143I GATC 1 cut(s) 309
BspACI CCGC 6 cut(s) 31, 189, 226, 325, 327, 481
BspANI GGCC 3 cut(s) 12, 261, 368
BspCNI CTCAG 1 cut(s) 184
BspEI TCCGGA 1 cut(s) 284
BspFNI CGCG 2 cut(s) 183, 327
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 176, 224
BspPI GGATC 1 cut(s) 317
BsrI ACTGG 2 cut(s) 319, 401
BssECI CCNNGG 3 cut(s) 126, 305, 325
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 4 cut(s) 105, 207, 296, 344
BssSI CACGAG 1 cut(s) 487
BssT1I CCWWGG 1 cut(s) 305
Bst2BI CACGAG 1 cut(s) 487
Bst4CI ACNGT 3 cut(s) 42, 118, 127
BstACI GRCGYC 4 cut(s) 105, 207, 296, 344
BstBAI YACGTR 1 cut(s) 353
BstDEI CTNAG 1 cut(s) 192
BstDSI CCRYGG 2 cut(s) 126, 325
BstF5I GGATG 1 cut(s) 462
BstFNI CGCG 2 cut(s) 183, 327
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 188, 214
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 60, 66, 374
BstSCI CCNGG 1 cut(s) 411
BstSFI CTRYAG 2 cut(s) 55, 64
BstSLI GKGCMC 2 cut(s) 318, 360
BstUI CGCG 2 cut(s) 183, 327
BstV1I GCAGC 2 cut(s) 45, 72
BstV2I GAAGAC 3 cut(s) 105, 147, 249
BsuRI GGCC 3 cut(s) 12, 261, 368
BtgI CCRYGG 2 cut(s) 126, 325
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 462
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 328
CseI GACGC 4 cut(s) 31, 196, 285, 333
Csp6I GTAC 2 cut(s) 436, 492
CviAII CATG 2 cut(s) 77, 364
CviQI GTAC 2 cut(s) 436, 492
DdeI CTNAG 1 cut(s) 192
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 366
Eam1105I GACNNNNNGTC 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 305
Eco24I GRGCYC 2 cut(s) 93, 179
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 93, 179
ErhI CCWWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 2 cut(s) 80, 367
FaiI YATR 2 cut(s) 78, 365
FaqI GGGAC 1 cut(s) 331
FatI CATG 2 cut(s) 76, 363
FauI CCCGC 1 cut(s) 488
FblI GTMKAC 2 cut(s) 113, 417
Fnu4HI GCNGC 4 cut(s) 31, 34, 61, 226
FokI GGATG 1 cut(s) 469
FriOI GRGCYC 2 cut(s) 93, 179
Fsp4HI GCNGC 4 cut(s) 31, 34, 61, 226
FspBI CTAG 2 cut(s) 306, 496
GlaI GCGC 1 cut(s) 184
GluI GCNGC 4 cut(s) 31, 34, 61, 226
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 3 cut(s) 12, 261, 368
HapII CCGG 5 cut(s) 13, 86, 285, 392, 412
HgaI GACGC 4 cut(s) 31, 196, 285, 333
HhaI GCGC 1 cut(s) 185
Hin1I GRCGYC 4 cut(s) 105, 207, 296, 344
Hin1II CATG 2 cut(s) 80, 367
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HincII GTYRAC 2 cut(s) 114, 418
HindII GTYRAC 2 cut(s) 114, 418
HinfI GANTC 6 cut(s) 80, 281, 406, 419, 428, 466
HpaII CCGG 5 cut(s) 13, 86, 285, 392, 412
HphI GGTGA 2 cut(s) 130, 294
Hpy166II GTNNAC 8 cut(s) 114, 121, 130, 316, 358, 385, 418, 427
Hpy188I TCNGA 2 cut(s) 50, 471
Hpy188III TCNNGA 2 cut(s) 77, 285
Hpy8I GTNNAC 8 cut(s) 114, 121, 130, 316, 358, 385, 418, 427
Hpy99I CGWCG 3 cut(s) 107, 118, 217
HpyCH4III ACNGT 3 cut(s) 42, 118, 127
HpyCH4IV ACGT 5 cut(s) 105, 252, 352, 371, 387
HpyCH4V TGCA 3 cut(s) 236, 316, 358
HpyF10VI GCNNNNNNNGC 3 cut(s) 60, 66, 374
HpyF3I CTNAG 1 cut(s) 192
HpySE526I ACGT 5 cut(s) 105, 252, 352, 371, 387
Hsp92I GRCGYC 4 cut(s) 105, 207, 296, 344
Hsp92II CATG 2 cut(s) 80, 367
HspAI GCGC 1 cut(s) 183
Kpn2I TCCGGA 1 cut(s) 284
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 5 cut(s) 88, 174, 222, 382, 399
Lsp1109I GCAGC 2 cut(s) 45, 72
MaeI CTAG 2 cut(s) 306, 496
MaeII ACGT 5 cut(s) 105, 252, 352, 371, 387
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 3 cut(s) 110, 152, 254
MhlI GDGCHC 4 cut(s) 93, 179, 318, 360
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 2 cut(s) 157, 231
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 4 cut(s) 74, 413, 422, 460
MmeI TCCRAC 2 cut(s) 423, 434
MnlI CCTC 3 cut(s) 196, 210, 213
Mox20I TGGCCA 1 cut(s) 368
MroI TCCGGA 1 cut(s) 284
MscI TGGCCA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 2 cut(s) 191, 327
MspI CCGG 5 cut(s) 13, 86, 285, 392, 412
MspR9I CCNGG 1 cut(s) 413
MvnI CGCG 2 cut(s) 183, 327
MwoI GCNNNNNNNGC 3 cut(s) 60, 66, 374
NciI CCSGG 1 cut(s) 413
NdeII GATC 1 cut(s) 309
NlaIII CATG 2 cut(s) 80, 367
NlaIV GGNNCC 2 cut(s) 176, 224
NmeAIII GCCGAG 1 cut(s) 72
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 444
PfeI GAWTC 2 cut(s) 281, 406
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 4 cut(s) 32, 35, 62, 227
PleI GAGTC 4 cut(s) 74, 413, 422, 460
PmaCI CACGTG 1 cut(s) 353
PmlI CACGTG 1 cut(s) 353
PpsI GAGTC 4 cut(s) 74, 413, 422, 460
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 93
PspCI CACGTG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 176, 224
PspPI GGNCC 1 cut(s) 10
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 2 cut(s) 437, 493
RsaNI GTAC 2 cut(s) 436, 492
RseI CAYNNNNRTG 1 cut(s) 75
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 328
SalI GTCGAC 2 cut(s) 112, 416
SatI GCNGC 4 cut(s) 31, 34, 61, 226
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 4 cut(s) 74, 413, 422, 460
ScrFI CCNGG 1 cut(s) 413
SduI GDGCHC 4 cut(s) 93, 179, 318, 360
SfcI CTRYAG 2 cut(s) 55, 64
Sfr303I CCGCGG 1 cut(s) 328
SgrBI CCGCGG 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 157, 231
SsiI CCGC 6 cut(s) 31, 189, 226, 325, 327, 481
SspMI CTAG 2 cut(s) 306, 496
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 1 cut(s) 411
StyI CCWWGG 1 cut(s) 305
TaaI ACNGT 3 cut(s) 42, 118, 127
TaiI ACGT 5 cut(s) 108, 255, 355, 374, 390
TaqI TCGA 4 cut(s) 113, 153, 215, 417
TasI AATT 2 cut(s) 157, 231
TauI GCSGC 2 cut(s) 33, 228
TfiI GAWTC 2 cut(s) 281, 406
TseI GCWGC 2 cut(s) 33, 60
TspGWI ACGGA 2 cut(s) 180, 261
Tth111I GACNNNGTC 1 cut(s) 104
VneI GTGCAC 2 cut(s) 314, 356
XapI RAATTY 1 cut(s) 157
XmaJI CCTAGG 1 cut(s) 305
XmiI GTMKAC 2 cut(s) 113, 417
XspI CTAG 2 cut(s) 306, 496
ZraI GACGTC 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.