MD05G1345500.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0013122
Physical Location & Seq
Forward (+)
46516547 .. 46517164
618 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1345500.v1.1.491

Sequence Viewer

Length: 618 bp
ATGGCGAAGGGACGGAAACTGACGCAGAGCCGCAGCGAACGCTTGCTCGGGACCTACGGCAGCTACAGCCACGCACATGACTCGCCGGAGCTCGGCGAGGACGATGTCTGGTCGATGGTCAACAGCGTCGACGAGAGGGAGGACCACGAAACCGAGAATTCGCAGGGAGAGTGGAGCCCACGCGCCGTCCCCGAGAGCAACGGGGGTGTTCAGGTGCGGAGAGGCCACCGAATTCCCAGGGAAGATGACAGCGTGGGCGGGCTGTCATTGGCGTTTGACGATTCCGGTAAAACTGTGTCGTCGCCTCGGATCGTGCACCAGTTCCGCGGGCACGACAGCATGGCTTCCCCAGGTGGGCACCACATTGCCACGTCAGCTCCCATGAACGTGCCCGACTGGAGCAAGATTCTCCGGGTCGACTCCGTGGACTCGCTGTACGACATGGACGACGGCTTGGATGGCAATAACTCGGAGATTATTCCCCCACACGAATACCTGGCGCGTGAGTACACGCGAGGCGCGACGTCGGTTTTCGAAGGCGTTGGGCGGACCCTGAAGGGCCGAGACATGAGTCGGGTCAGGGATGCGGTGTGGAGCCGGACCGGGTTTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

206

Amino Acids

22.64

Weight (kDa)

5.33

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 203 2.2e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 527
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 2 cut(s) 129, 417
AccII CGCG 5 cut(s) 183, 327, 502, 514, 521
AciI CCGC 7 cut(s) 31, 217, 258, 325, 327, 547, 587
AclWI GGATC 1 cut(s) 317
AcsI RAATTY 2 cut(s) 157, 231
AcuI CTGAAG 1 cut(s) 575
AcyI GRCGYC 1 cut(s) 524
AfaI GTAC 2 cut(s) 437, 509
AfiI CCNNNNNNNGG 2 cut(s) 92, 354
AjiI CACGTC 1 cut(s) 372
AjnI CCWGG 3 cut(s) 236, 349, 495
AluBI AGCT 3 cut(s) 63, 91, 377
AluI AGCT 3 cut(s) 63, 91, 377
Alw21I GWGCWC 2 cut(s) 93, 318
Alw26I GTCTC 1 cut(s) 558
Alw44I GTGCAC 1 cut(s) 314
AlwI GGATC 1 cut(s) 317
Ama87I CYCGRG 2 cut(s) 47, 191
AoxI GGCC 2 cut(s) 223, 559
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 33, 60
ApoI RAATTY 2 cut(s) 157, 231
AspLEI GCGC 3 cut(s) 185, 502, 521
AspS9I GGNCC 5 cut(s) 51, 142, 549, 559, 600
AsuC2I CCSGG 2 cut(s) 413, 604
AsuII TTCGAA 1 cut(s) 534
AvaI CYCGRG 2 cut(s) 47, 191
AvaII GGWCC 4 cut(s) 51, 142, 549, 600
BaeGI GKGCMC 4 cut(s) 318, 333, 360, 393
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 93, 179
Bbv12I GWGCWC 2 cut(s) 93, 318
BbvI GCAGC 2 cut(s) 45, 72
BccI CCATC 3 cut(s) 109, 452, 605
BceAI ACGGC 3 cut(s) 73, 170, 466
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 3 cut(s) 238, 351, 497
BcnI CCSGG 2 cut(s) 413, 604
BcoDI GTCTC 1 cut(s) 558
BfmI CTRYAG 1 cut(s) 64
BisI GCNGC 3 cut(s) 31, 34, 61
BlsI GCNGC 3 cut(s) 32, 35, 62
Bme1390I CCNGG 5 cut(s) 238, 351, 413, 497, 604
Bme18I GGWCC 4 cut(s) 51, 142, 549, 600
BmeT110I CYCGRG 2 cut(s) 47, 191
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 5 cut(s) 51, 142, 549, 559, 600
BmiI GGNNCC 5 cut(s) 52, 176, 359, 551, 596
BmrFI CCNGG 5 cut(s) 238, 351, 413, 497, 604
BmsI GCATC 1 cut(s) 574
BoxI GACNNNNGTC 1 cut(s) 570
BpmI CTGGAG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 2 cut(s) 413, 604
BsaHI GRCGYC 1 cut(s) 524
BsaJI CCNNGG 6 cut(s) 236, 237, 305, 325, 349, 423
BsaWI WCCGGW 1 cut(s) 284
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 354
Bse1I ACTGG 2 cut(s) 319, 401
Bse3DI GCAATG 1 cut(s) 363
BseBI CCWGG 3 cut(s) 238, 351, 497
BseDI CCNNGG 6 cut(s) 236, 237, 305, 325, 349, 423
BseGI GGATG 2 cut(s) 463, 589
BseLI CCNNNNNNNGG 2 cut(s) 92, 354
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 2 cut(s) 319, 401
BseSI GKGCMC 4 cut(s) 318, 333, 360, 393
BseXI GCAGC 2 cut(s) 45, 72
Bsh1236I CGCG 5 cut(s) 183, 327, 502, 514, 521
BshFI GGCC 2 cut(s) 225, 561
BshNI GGYRCC 1 cut(s) 357
BsiHKAI GWGCWC 2 cut(s) 93, 318
BsiHKCI CYCGRG 2 cut(s) 47, 191
BsiSI CCGG 5 cut(s) 86, 285, 412, 598, 603
BslFI GGGAC 3 cut(s) 24, 64, 173
BslI CCNNNNNNNGG 2 cut(s) 92, 354
BsmAI GTCTC 1 cut(s) 558
BsmFI GGGAC 3 cut(s) 24, 64, 173
BsnI GGCC 2 cut(s) 225, 561
BsoBI CYCGRG 2 cut(s) 47, 191
Bsp119I TTCGAA 1 cut(s) 534
Bsp1286I GDGCHC 6 cut(s) 93, 179, 318, 333, 360, 393
Bsp143I GATC 1 cut(s) 309
BspACI CCGC 7 cut(s) 31, 217, 258, 325, 327, 547, 587
BspANI GGCC 2 cut(s) 225, 561
BspFNI CGCG 5 cut(s) 183, 327, 502, 514, 521
BspLI GGNNCC 5 cut(s) 52, 176, 359, 551, 596
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 2 cut(s) 319, 401
BssECI CCNNGG 6 cut(s) 236, 237, 305, 325, 349, 423
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 1 cut(s) 524
Bst2UI CCWGG 3 cut(s) 238, 351, 497
Bst4CI ACNGT 1 cut(s) 295
BstACI GRCGYC 1 cut(s) 524
BstBI TTCGAA 1 cut(s) 534
BstC8I GCNNGC 3 cut(s) 44, 260, 329
BstDSI CCRYGG 2 cut(s) 325, 423
BstF5I GGATG 2 cut(s) 463, 589
BstFNI CGCG 5 cut(s) 183, 327, 502, 514, 521
BstHHI GCGC 3 cut(s) 185, 502, 521
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 1 cut(s) 558
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 4 cut(s) 39, 66, 374, 459
BstNI CCWGG 3 cut(s) 238, 351, 497
BstPAI GACNNNNGTC 1 cut(s) 570
BstSCI CCNGG 5 cut(s) 236, 349, 411, 495, 602
BstSFI CTRYAG 1 cut(s) 64
BstSLI GKGCMC 4 cut(s) 318, 333, 360, 393
BstUI CGCG 5 cut(s) 183, 327, 502, 514, 521
BstV1I GCAGC 2 cut(s) 45, 72
BsuRI GGCC 2 cut(s) 225, 561
BtgI CCRYGG 2 cut(s) 325, 423
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 2 cut(s) 463, 589
Cac8I GCNNGC 3 cut(s) 44, 260, 329
CfoI GCGC 3 cut(s) 185, 502, 521
Cfr13I GGNCC 5 cut(s) 51, 142, 549, 559, 600
Cfr42I CCGCGG 1 cut(s) 328
CpoI CGGWCCG 1 cut(s) 600
CseI GACGC 2 cut(s) 31, 115
Csp6I GTAC 2 cut(s) 436, 508
CspI CGGWCCG 1 cut(s) 600
CviAII CATG 5 cut(s) 77, 340, 382, 442, 568
CviQI GTAC 2 cut(s) 436, 508
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EciI GGCGGA 1 cut(s) 562
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 179
Eco47I GGWCC 4 cut(s) 51, 142, 549, 600
Eco53kI GAGCTC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 575
Eco88I CYCGRG 2 cut(s) 47, 191
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 51
EcoRI GAATTC 2 cut(s) 157, 231
EcoRII CCWGG 3 cut(s) 236, 349, 495
EcoT38I GRGCYC 2 cut(s) 93, 179
FaeI CATG 5 cut(s) 80, 343, 385, 445, 571
FaiI YATR 5 cut(s) 78, 341, 383, 443, 569
FaqI GGGAC 3 cut(s) 24, 64, 173
FatI CATG 5 cut(s) 76, 339, 381, 441, 567
FauI CCCGC 2 cut(s) 251, 320
FblI GTMKAC 2 cut(s) 129, 417
Fnu4HI GCNGC 3 cut(s) 31, 34, 61
FokI GGATG 2 cut(s) 470, 596
FriOI GRGCYC 2 cut(s) 93, 179
Fsp4HI GCNGC 3 cut(s) 31, 34, 61
GlaI GCGC 3 cut(s) 184, 501, 520
GluI GCNGC 3 cut(s) 31, 34, 61
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 2 cut(s) 225, 561
HapII CCGG 5 cut(s) 86, 285, 412, 598, 603
HgaI GACGC 2 cut(s) 31, 115
HhaI GCGC 3 cut(s) 185, 502, 521
Hin1I GRCGYC 1 cut(s) 524
Hin1II CATG 5 cut(s) 80, 343, 385, 445, 571
Hin6I GCGC 3 cut(s) 183, 500, 519
HinP1I GCGC 3 cut(s) 183, 500, 519
HincII GTYRAC 3 cut(s) 121, 130, 418
HindII GTYRAC 3 cut(s) 121, 130, 418
HinfI GANTC 6 cut(s) 80, 281, 406, 419, 428, 571
HpaII CCGG 5 cut(s) 86, 285, 412, 598, 603
Hpy166II GTNNAC 6 cut(s) 121, 130, 316, 418, 427, 510
Hpy188I TCNGA 2 cut(s) 309, 472
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 6 cut(s) 121, 130, 316, 418, 427, 510
Hpy99I CGWCG 6 cut(s) 131, 134, 304, 452, 526, 529
HpyAV CCTTC 2 cut(s) 530, 550
HpyCH4III ACNGT 1 cut(s) 295
HpyCH4IV ACGT 3 cut(s) 371, 387, 524
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 66, 374, 459
HpySE526I ACGT 3 cut(s) 371, 387, 524
Hsp92I GRCGYC 1 cut(s) 524
Hsp92II CATG 5 cut(s) 80, 343, 385, 445, 571
HspAI GCGC 3 cut(s) 183, 500, 519
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 5 cut(s) 88, 174, 382, 399, 594
Lsp1109I GCAGC 2 cut(s) 45, 72
LweI GCATC 1 cut(s) 574
MaeII ACGT 3 cut(s) 371, 387, 524
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 6 cut(s) 93, 179, 318, 333, 360, 393
MluCI AATT 2 cut(s) 157, 231
MlyI GAGTC 4 cut(s) 74, 413, 422, 580
MnlI CCTC 6 cut(s) 91, 129, 133, 215, 315, 509
MslI CAYNNNNRTG 2 cut(s) 75, 386
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 5 cut(s) 86, 285, 412, 598, 603
MspR9I CCNGG 5 cut(s) 238, 351, 413, 497, 604
MvaI CCWGG 3 cut(s) 238, 351, 497
MvnI CGCG 5 cut(s) 183, 327, 502, 514, 521
MwoI GCNNNNNNNGC 4 cut(s) 39, 66, 374, 459
NciI CCSGG 2 cut(s) 413, 604
NdeII GATC 1 cut(s) 309
NlaIII CATG 5 cut(s) 80, 343, 385, 445, 571
NlaIV GGNNCC 5 cut(s) 52, 176, 359, 551, 596
NmeAIII GCCGAG 2 cut(s) 72, 587
NspV TTCGAA 1 cut(s) 534
PasI CCCWGGG 1 cut(s) 237
PcsI WCGNNNNNNNCGW 3 cut(s) 99, 444, 518
PfeI GAWTC 2 cut(s) 281, 406
PflFI GACNNNGTC 1 cut(s) 104
PkrI GCNGC 3 cut(s) 32, 35, 62
PleI GAGTC 4 cut(s) 74, 413, 422, 579
PpsI GAGTC 4 cut(s) 74, 413, 422, 579
PpuMI RGGWCCY 1 cut(s) 51
PshAI GACNNNNGTC 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 3 cut(s) 236, 349, 495
PspGI CCWGG 3 cut(s) 236, 349, 495
PspN4I GGNNCC 5 cut(s) 52, 176, 359, 551, 596
PspPI GGNCC 5 cut(s) 51, 142, 549, 559, 600
PspPPI RGGWCCY 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 2 cut(s) 437, 509
RsaNI GTAC 2 cut(s) 436, 508
RseI CAYNNNNRTG 2 cut(s) 75, 386
Rsr2I CGGWCCG 1 cut(s) 600
RsrII CGGWCCG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 328
SalI GTCGAC 2 cut(s) 128, 416
SatI GCNGC 3 cut(s) 31, 34, 61
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 5 cut(s) 51, 142, 549, 559, 600
SchI GAGTC 4 cut(s) 74, 413, 422, 580
ScrFI CCNGG 5 cut(s) 238, 351, 413, 497, 604
SduI GDGCHC 6 cut(s) 93, 179, 318, 333, 360, 393
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 534
SgrBI CCGCGG 1 cut(s) 328
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 4 cut(s) 51, 142, 549, 600
SmiMI CAYNNNNRTG 2 cut(s) 75, 386
Sse9I AATT 2 cut(s) 157, 231
SsiI CCGC 7 cut(s) 31, 217, 258, 325, 327, 547, 587
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 5 cut(s) 236, 349, 411, 495, 602
TaaI ACNGT 1 cut(s) 295
TaiI ACGT 3 cut(s) 374, 390, 527
TaqI TCGA 4 cut(s) 113, 129, 417, 534
TasI AATT 2 cut(s) 157, 231
TatI WGTACW 1 cut(s) 507
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 2 cut(s) 281, 406
TseI GCWGC 2 cut(s) 33, 60
TspDTI ATGAA 1 cut(s) 398
TspGWI ACGGA 2 cut(s) 28, 412
Tth111I GACNNNGTC 1 cut(s) 104
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 4 cut(s) 51, 142, 549, 600
XapI RAATTY 2 cut(s) 157, 231
XmiI GTMKAC 2 cut(s) 129, 417
ZraI GACGTC 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.