Rh5BG027700

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0013122
Physical Location & Seq
Reverse (-)
1932069 .. 1934072
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG027700.1

Sequence Viewer

Length: 630 bp
ATGGCGAAGGGCCGGAAACTGACGCAGAGCCGCAGCGAACGTTTCCTCGGGAGCTACAGTAGCTACAGCCACGCCCAAGAGTCGCCGGAGCTCGCCGAAGACGATGTCTGGTCGATGGTGGAGACCGTGGAGGAGCGGGACGACAACGAGGTCGATAACTCTCAGAGCGAGTGGAGTCCACGCGTCGCCGCCGAGACTAACGGAGGCTTTGCCGCGAGGGGAAGAAGCCGGCGGATTCCACAGGACGATAACAACGTTAGCGGAGGGCTGTCTTTGGCGTTTGTCGAAGACTCGGGAAAGACGGCGTCGTCGCCTCGGATCGTGCACCAGTTCCGCGGACATGACAGCGTGGCGTCTCCACGTGGCCGCCACATGGCCTCGTCACTCCCCGTGAACGTGCCGGACTGGAGCAAGATTCTCCGGGTCGACTCGGTCGACTCGCTGTACGAGTTCAACGACGGCATGGACAGCAGCAACGACCCGGAGATGATTCCCCCACATGAGTACCTGGCGCGTGAGTACACGCGCGGGGCGACGTCGGTTTTCGAGGGGGTGGGCCGGACGTTGAAGGGCCGGGACATGAGGCGGGTTAGGGATGCGGTTTGGAGCCGAACCGGGTTCGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

209

Amino Acids

23.3

Weight (kDa)

5.31

Isoelectric Point (pI)

50.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 207 1.1e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 307
AatII GACGTC 1 cut(s) 539
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 2 cut(s) 426, 435
AccII CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
AclI AACGTT 2 cut(s) 40, 255
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 364
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 3 cut(s) 305, 353, 536
AfaI GTAC 3 cut(s) 446, 506, 521
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 2 cut(s) 454, 568
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 3 cut(s) 54, 63, 91
AluI AGCT 3 cut(s) 54, 63, 91
Alw21I GWGCWC 2 cut(s) 93, 327
Alw26I GTCTC 3 cut(s) 116, 188, 360
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 2 cut(s) 47, 292
AoxI GGCC 5 cut(s) 10, 364, 375, 556, 571
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 33, 471
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 2 cut(s) 514, 528
AspS9I GGNCC 3 cut(s) 10, 556, 571
AsuC2I CCSGG 4 cut(s) 422, 482, 575, 616
AvaI CYCGRG 2 cut(s) 47, 292
BaeGI GKGCMC 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 488, 521
BanII GRGCYC 1 cut(s) 93
BbrPI CACGTG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 105, 294
Bbv12I GWGCWC 2 cut(s) 93, 327
BbvI GCAGC 2 cut(s) 45, 483
BccI CCATC 2 cut(s) 109, 617
BceAI ACGGC 2 cut(s) 318, 475
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 4 cut(s) 422, 482, 575, 616
BcoDI GTCTC 3 cut(s) 116, 188, 360
BfmI CTRYAG 2 cut(s) 55, 64
BisI GCNGC 6 cut(s) 31, 34, 189, 213, 367, 472
BlsI GCNGC 6 cut(s) 32, 35, 190, 214, 368, 473
Bme1390I CCNGG 5 cut(s) 422, 482, 509, 575, 616
BmeT110I CYCGRG 2 cut(s) 47, 292
BmgT120I GGNCC 3 cut(s) 10, 556, 571
BmiI GGNNCC 1 cut(s) 608
BmrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 105, 294
BpmI CTGGAG 1 cut(s) 427
BpuMI CCSGG 4 cut(s) 422, 482, 575, 616
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 3 cut(s) 305, 353, 536
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 46, 126, 314, 334
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 2 cut(s) 328, 410
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 4 cut(s) 46, 126, 314, 334
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 328, 410
BseRI GAGGAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 2 cut(s) 45, 483
Bsh1236I CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 5 cut(s) 12, 366, 377, 558, 573
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 93, 327
BsiHKCI CYCGRG 2 cut(s) 47, 292
BsiSI CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
BslFI GGGAC 2 cut(s) 152, 590
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 3 cut(s) 116, 188, 360
BsmBI CGTCTC 1 cut(s) 360
BsmFI GGGAC 2 cut(s) 152, 590
BsnI GGCC 5 cut(s) 12, 366, 377, 558, 573
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 47, 292
Bsp1286I GDGCHC 2 cut(s) 93, 327
Bsp143I GATC 1 cut(s) 318
BspANI GGCC 5 cut(s) 12, 366, 377, 558, 573
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BspLI GGNNCC 1 cut(s) 608
BspPI GGATC 1 cut(s) 326
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 2 cut(s) 328, 410
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 4 cut(s) 46, 126, 314, 334
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 3 cut(s) 305, 353, 536
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 59, 127
BstACI GRCGYC 3 cut(s) 305, 353, 536
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 93, 230
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 2 cut(s) 126, 334
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BstHHI GCGC 2 cut(s) 514, 528
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 3 cut(s) 116, 188, 360
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 60, 468
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 5 cut(s) 420, 480, 507, 573, 614
BstSFI CTRYAG 2 cut(s) 55, 64
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BstV1I GCAGC 2 cut(s) 45, 483
BstV2I GAAGAC 2 cut(s) 105, 294
BsuRI GGCC 5 cut(s) 12, 366, 377, 558, 573
BtgI CCRYGG 2 cut(s) 126, 334
BtsCI GGATG 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 93, 230
CfoI GCGC 2 cut(s) 514, 528
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 10, 556, 571
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 4 cut(s) 31, 172, 294, 342
Csp6I GTAC 3 cut(s) 445, 505, 520
CviAII CATG 5 cut(s) 341, 373, 463, 500, 580
CviQI GTAC 3 cut(s) 445, 505, 520
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DrdI GACNNNNNNGTC 2 cut(s) 149, 307
DseDI GACNNNNNNGTC 2 cut(s) 149, 307
EaeI YGGCCR 1 cut(s) 364
EciI GGCGGA 1 cut(s) 247
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 47, 292
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 360
FaeI CATG 5 cut(s) 344, 376, 466, 503, 583
FaiI YATR 5 cut(s) 342, 374, 464, 501, 581
FaqI GGGAC 2 cut(s) 152, 590
FatI CATG 5 cut(s) 340, 372, 462, 499, 579
FauI CCCGC 3 cut(s) 129, 521, 579
FblI GTMKAC 2 cut(s) 426, 435
Fnu4HI GCNGC 6 cut(s) 31, 34, 189, 213, 367, 472
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 6 cut(s) 31, 34, 189, 213, 367, 472
GlaI GCGC 2 cut(s) 513, 527
GluI GCNGC 6 cut(s) 31, 34, 189, 213, 367, 472
GsuI CTGGAG 1 cut(s) 427
HaeIII GGCC 5 cut(s) 12, 366, 377, 558, 573
HapII CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
HgaI GACGC 4 cut(s) 31, 172, 294, 342
HhaI GCGC 2 cut(s) 514, 528
Hin1I GRCGYC 3 cut(s) 305, 353, 536
Hin1II CATG 5 cut(s) 344, 376, 466, 503, 583
Hin6I GCGC 2 cut(s) 512, 526
HinP1I GCGC 2 cut(s) 512, 526
HincII GTYRAC 2 cut(s) 427, 436
HindII GTYRAC 2 cut(s) 427, 436
HinfI GANTC 8 cut(s) 80, 175, 235, 290, 415, 428, 437, 490
HpaII CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
Hpy166II GTNNAC 6 cut(s) 179, 325, 394, 427, 436, 522
Hpy188I TCNGA 2 cut(s) 165, 318
Hpy188III TCNNGA 2 cut(s) 49, 294
Hpy8I GTNNAC 6 cut(s) 179, 325, 394, 427, 436, 522
Hpy99I CGWCG 6 cut(s) 188, 310, 313, 461, 538, 541
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 59, 127
HpyCH4IV ACGT 6 cut(s) 40, 255, 361, 396, 536, 563
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 468
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 6 cut(s) 40, 255, 361, 396, 536, 563
Hsp92I GRCGYC 3 cut(s) 305, 353, 536
Hsp92II CATG 5 cut(s) 344, 376, 466, 503, 583
HspAI GCGC 2 cut(s) 512, 526
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 5 cut(s) 51, 88, 133, 408, 606
Lsp1109I GCAGC 2 cut(s) 45, 483
LweI GCATC 1 cut(s) 586
MaeII ACGT 6 cut(s) 40, 255, 361, 396, 536, 563
MaeIII GTNAC 1 cut(s) 381
MalI GATC 1 cut(s) 320
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 318
MboII GAAGA 3 cut(s) 110, 234, 299
MhlI GDGCHC 2 cut(s) 93, 327
MluI ACGCGT 1 cut(s) 181
MlyI GAGTC 5 cut(s) 89, 184, 284, 422, 431
MroNI GCCGGC 1 cut(s) 228
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
MspR9I CCNGG 5 cut(s) 422, 482, 509, 575, 616
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
MwoI GCNNNNNNNGC 2 cut(s) 60, 468
NaeI GCCGGC 1 cut(s) 230
NciI CCSGG 4 cut(s) 422, 482, 575, 616
NdeII GATC 1 cut(s) 318
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 5 cut(s) 344, 376, 466, 503, 583
NlaIV GGNNCC 1 cut(s) 608
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 5 cut(s) 99, 252, 432, 453, 530
PdiI GCCGGC 1 cut(s) 230
PfeI GAWTC 3 cut(s) 235, 415, 490
PflFI GACNNNGTC 3 cut(s) 104, 304, 431
PkrI GCNGC 6 cut(s) 32, 35, 190, 214, 368, 473
PleI GAGTC 5 cut(s) 88, 183, 284, 422, 431
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 5 cut(s) 88, 183, 284, 422, 431
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 2 cut(s) 40, 255
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 608
PspPI GGNCC 3 cut(s) 10, 556, 571
PsyI GACNNNGTC 3 cut(s) 104, 304, 431
RsaI GTAC 3 cut(s) 446, 506, 521
RsaNI GTAC 3 cut(s) 445, 505, 520
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 337
SalI GTCGAC 2 cut(s) 425, 434
SatI GCNGC 6 cut(s) 31, 34, 189, 213, 367, 472
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 3 cut(s) 10, 556, 571
SchI GAGTC 5 cut(s) 89, 184, 284, 422, 431
ScrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
SduI GDGCHC 2 cut(s) 93, 327
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 55, 64
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 5 cut(s) 420, 480, 507, 573, 614
TaaI ACNGT 2 cut(s) 59, 127
TaiI ACGT 6 cut(s) 43, 258, 364, 399, 539, 566
TaqI TCGA 7 cut(s) 113, 153, 285, 426, 435, 546, 621
TaqII GACCGA 1 cut(s) 421
TatI WGTACW 1 cut(s) 519
TauI GCSGC 4 cut(s) 33, 191, 215, 369
TfiI GAWTC 3 cut(s) 235, 415, 490
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 2 cut(s) 33, 471
Tsp45I GTSAC 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 216
Tth111I GACNNNGTC 3 cut(s) 104, 304, 431
VneI GTGCAC 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 426, 435
ZraI GACGTC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.