FvH4_3g02140

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013122
Physical Location & Seq
Reverse (-)
1080746 .. 1081375
630 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02140.t1

Sequence Viewer

Length: 630 bp
ATGGCGAAGGGCCGGAAACTGACGCAGAGCCGCAGCGAACGTTTTCTCGGGAGCTACAGTAGCTACAGCCACGCCCAAGAGTCGCCGGAGCTGGCCGAGGACGATGTGTGGTCGATGGTGGAGAGCGTGGAGGAGAGGGAGGACAACGAGGTGGACAGCTCTCAGAGCGAGTGGAGTCCACGCGTGGCCGCCGAGACTAACGGAGGGTTTGCGGCGAGGGGGATCAGAAGCCGGCGGATATCTCGGGACGATGACAACAACGTTAGCGGAGGAGGGCTGTCTCTGGCTTTTGTCGACGACTCTGGAAAGACGGCGTCGTCGCCTCGGATCGTGCACCAGTTCCGCGGGCATGACAGCCCACGTGGGCGCCACATGGCCACGTCACTGCCGATGAACGTGCCGGACTGGAGCAAGATTCTCCGGGTCGACTCGGTGGACTCGCTGTACGAGTTCGACGACGGAATGGACAGCAGCAACGACCCGGAGATGATCCCCCCGCACGAGTACCTGGCGCGTGAGTACACGCGCGGCGCGACGTCGGTGTTCGAGGGGGTTGGCCGGACGTTGAAGGGCCGGGACATGAGGCGGGTGAGGGATGCGGTTTGGAGCCGGACCGGGTTCGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

210

Amino Acids

23.35

Weight (kDa)

5.2

Isoelectric Point (pI)

50.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 207 8.5e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 316
AatII GACGTC 1 cut(s) 539
AccB1I GGYRCC 1 cut(s) 366
AccI GTMKAC 2 cut(s) 294, 426
AccII CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
AclI AACGTT 2 cut(s) 40, 261
AclWI GGATC 3 cut(s) 230, 335, 484
AcoI YGGCCR 4 cut(s) 93, 186, 375, 556
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 3 cut(s) 314, 367, 536
AfaI GTAC 3 cut(s) 446, 506, 521
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 568
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 4 cut(s) 54, 63, 91, 159
AluI AGCT 4 cut(s) 54, 63, 91, 159
Alw21I GWGCWC 1 cut(s) 336
Alw26I GTCTC 2 cut(s) 188, 285
Alw44I GTGCAC 1 cut(s) 332
AlwI GGATC 3 cut(s) 230, 335, 484
Ama87I CYCGRG 2 cut(s) 47, 243
AoxI GGCC 6 cut(s) 10, 93, 186, 375, 556, 571
ApaLI GTGCAC 1 cut(s) 332
ApeKI GCWGC 2 cut(s) 33, 471
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 4 cut(s) 369, 514, 528, 533
AspS9I GGNCC 3 cut(s) 10, 571, 612
AsuC2I CCSGG 4 cut(s) 422, 482, 575, 616
AsuHPI GGTGA 1 cut(s) 601
AvaI CYCGRG 2 cut(s) 47, 243
AvaII GGWCC 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 336
BalI TGGCCA 1 cut(s) 377
BanI GGYRCC 1 cut(s) 366
BauI CACGAG 1 cut(s) 500
BbrPI CACGTG 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 336
BbvI GCAGC 2 cut(s) 45, 483
BccI CCATC 2 cut(s) 109, 617
BceAI ACGGC 1 cut(s) 327
BcgI CGANNNNNNTGC 2 cut(s) 379, 413
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 4 cut(s) 422, 482, 575, 616
BcoDI GTCTC 2 cut(s) 188, 285
BfmI CTRYAG 2 cut(s) 55, 64
BfoI RGCGCY 1 cut(s) 370
BisI GCNGC 6 cut(s) 31, 34, 189, 213, 472, 529
BlsI GCNGC 6 cut(s) 32, 35, 190, 214, 473, 530
Bme1390I CCNGG 5 cut(s) 422, 482, 509, 575, 616
Bme18I GGWCC 1 cut(s) 612
BmeT110I CYCGRG 2 cut(s) 47, 243
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 3 cut(s) 10, 571, 612
BmiI GGNNCC 2 cut(s) 368, 608
BmrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
BmsI GCATC 1 cut(s) 586
BpmI CTGGAG 1 cut(s) 427
BpuMI CCSGG 4 cut(s) 422, 482, 575, 616
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 3 cut(s) 314, 367, 536
BsaJI CCNNGG 3 cut(s) 96, 323, 343
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse118I RCCGGY 1 cut(s) 231
Bse1I ACTGG 2 cut(s) 337, 410
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 3 cut(s) 96, 323, 343
BseGI GGATG 1 cut(s) 601
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 337, 410
BseRI GAGGAG 2 cut(s) 146, 285
BseSI GKGCMC 1 cut(s) 336
BseXI GCAGC 2 cut(s) 45, 483
Bsh1236I CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
BshFI GGCC 6 cut(s) 12, 95, 188, 377, 558, 573
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 336
BsiHKCI CYCGRG 2 cut(s) 47, 243
BslFI GGGAC 2 cut(s) 260, 590
BsmAI GTCTC 2 cut(s) 188, 285
BsmFI GGGAC 2 cut(s) 260, 590
BsnI GGCC 6 cut(s) 12, 95, 188, 377, 558, 573
BsoBI CYCGRG 2 cut(s) 47, 243
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 3 cut(s) 222, 327, 489
BspANI GGCC 6 cut(s) 12, 95, 188, 377, 558, 573
BspCNI CTCAG 1 cut(s) 175
BspFNI CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
BspLI GGNNCC 2 cut(s) 368, 608
BspPI GGATC 3 cut(s) 230, 335, 484
BspT107I GGYRCC 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 231
BsrI ACTGG 2 cut(s) 337, 410
BssAI RCCGGY 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 96, 323, 343
BssMI GATC 3 cut(s) 222, 327, 489
BssNI GRCGYC 3 cut(s) 314, 367, 536
BssSI CACGAG 1 cut(s) 500
Bst2BI CACGAG 1 cut(s) 500
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 3 cut(s) 314, 367, 536
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 93, 233, 347
BstDEI CTNAG 1 cut(s) 162
BstDSI CCRYGG 1 cut(s) 343
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
BstH2I RGCGCY 1 cut(s) 370
BstHHI GCGC 4 cut(s) 369, 514, 528, 533
BstKTI GATC 3 cut(s) 225, 330, 492
BstMAI GTCTC 2 cut(s) 188, 285
BstMBI GATC 3 cut(s) 222, 327, 489
BstMWI GCNNNNNNNGC 2 cut(s) 60, 165
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 5 cut(s) 420, 480, 507, 573, 614
BstSFI CTRYAG 2 cut(s) 55, 64
BstSLI GKGCMC 1 cut(s) 336
BstUI CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
BstV1I GCAGC 2 cut(s) 45, 483
BsuRI GGCC 6 cut(s) 12, 95, 188, 377, 558, 573
BtgI CCRYGG 1 cut(s) 343
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 1 cut(s) 601
BtsI GCAGTG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 383
Cac8I GCNNGC 3 cut(s) 93, 233, 347
CfoI GCGC 4 cut(s) 369, 514, 528, 533
Cfr10I RCCGGY 1 cut(s) 231
Cfr13I GGNCC 3 cut(s) 10, 571, 612
Cfr42I CCGCGG 1 cut(s) 346
CpoI CGGWCCG 1 cut(s) 612
CseI GACGC 2 cut(s) 31, 303
Csp6I GTAC 3 cut(s) 445, 505, 520
CspI CGGWCCG 1 cut(s) 612
CviAII CATG 3 cut(s) 350, 373, 580
CviQI GTAC 3 cut(s) 445, 505, 520
DdeI CTNAG 1 cut(s) 162
DinI GGCGCC 1 cut(s) 368
DpnI GATC 3 cut(s) 224, 329, 491
DpnII GATC 3 cut(s) 222, 327, 489
DrdI GACNNNNNNGTC 1 cut(s) 316
DseDI GACNNNNNNGTC 1 cut(s) 316
EaeI YGGCCR 4 cut(s) 93, 186, 375, 556
EciI GGCGGA 1 cut(s) 250
Eco32I GATATC 1 cut(s) 240
Eco47I GGWCC 1 cut(s) 612
Eco72I CACGTG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 47, 243
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 240
EgeI GGCGCC 1 cut(s) 368
EheI GGCGCC 1 cut(s) 368
FaeI CATG 3 cut(s) 353, 376, 583
FaiI YATR 3 cut(s) 351, 374, 581
FaqI GGGAC 2 cut(s) 260, 590
FatI CATG 3 cut(s) 349, 372, 579
FauI CCCGC 3 cut(s) 338, 504, 579
FblI GTMKAC 2 cut(s) 294, 426
Fnu4HI GCNGC 6 cut(s) 31, 34, 189, 213, 472, 529
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 6 cut(s) 31, 34, 189, 213, 472, 529
GlaI GCGC 4 cut(s) 368, 513, 527, 532
GluI GCNGC 6 cut(s) 31, 34, 189, 213, 472, 529
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 370
HaeIII GGCC 6 cut(s) 12, 95, 188, 377, 558, 573
HgaI GACGC 2 cut(s) 31, 303
HhaI GCGC 4 cut(s) 369, 514, 528, 533
Hin1I GRCGYC 3 cut(s) 314, 367, 536
Hin1II CATG 3 cut(s) 353, 376, 583
Hin6I GCGC 4 cut(s) 367, 512, 526, 531
HinP1I GCGC 4 cut(s) 367, 512, 526, 531
HincII GTYRAC 2 cut(s) 295, 427
HindII GTYRAC 2 cut(s) 295, 427
HinfI GANTC 6 cut(s) 80, 175, 299, 415, 428, 437
HphI GGTGA 1 cut(s) 601
Hpy166II GTNNAC 7 cut(s) 154, 179, 295, 334, 427, 436, 522
Hpy188I TCNGA 3 cut(s) 165, 227, 327
Hpy188III TCNNGA 3 cut(s) 49, 245, 303
Hpy8I GTNNAC 7 cut(s) 154, 179, 295, 334, 427, 436, 522
Hpy99I CGWCG 7 cut(s) 299, 319, 322, 458, 461, 538, 541
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 7 cut(s) 40, 261, 361, 380, 396, 536, 563
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 165
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 7 cut(s) 40, 261, 361, 380, 396, 536, 563
Hsp92I GRCGYC 3 cut(s) 314, 367, 536
Hsp92II CATG 3 cut(s) 353, 376, 583
HspAI GCGC 4 cut(s) 367, 512, 526, 531
KasI GGCGCC 1 cut(s) 366
KroI GCCGGC 1 cut(s) 231
KroNI GCCGGC 1 cut(s) 233
KspI CCGCGG 1 cut(s) 346
Kzo9I GATC 3 cut(s) 222, 327, 489
LmnI GCTCC 4 cut(s) 51, 88, 408, 606
Lsp1109I GCAGC 2 cut(s) 45, 483
LweI GCATC 1 cut(s) 586
MaeII ACGT 7 cut(s) 40, 261, 361, 380, 396, 536, 563
MaeIII GTNAC 1 cut(s) 381
MalI GATC 3 cut(s) 224, 329, 491
MboI GATC 3 cut(s) 222, 327, 489
MhlI GDGCHC 1 cut(s) 336
MlsI TGGCCA 1 cut(s) 377
MluI ACGCGT 1 cut(s) 181
MluNI TGGCCA 1 cut(s) 377
Mly113I GGCGCC 1 cut(s) 367
MlyI GAGTC 5 cut(s) 89, 184, 293, 422, 431
Mox20I TGGCCA 1 cut(s) 377
MroNI GCCGGC 1 cut(s) 231
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 1 cut(s) 377
Msp20I TGGCCA 1 cut(s) 377
MspA1I CMGCKG 1 cut(s) 345
MspR9I CCNGG 5 cut(s) 422, 482, 509, 575, 616
MteI GCGCNGCGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 6 cut(s) 183, 345, 514, 526, 528, 533
MwoI GCNNNNNNNGC 2 cut(s) 60, 165
NaeI GCCGGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 367
NciI CCSGG 4 cut(s) 422, 482, 575, 616
NdeII GATC 3 cut(s) 222, 327, 489
NgoMIV GCCGGC 1 cut(s) 231
NlaIII CATG 3 cut(s) 353, 376, 583
NlaIV GGNNCC 2 cut(s) 368, 608
NmeAIII GCCGAG 2 cut(s) 121, 217
NmuCI GTSAC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 3 cut(s) 386, 453, 530
PdiI GCCGGC 1 cut(s) 233
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 1 cut(s) 415
PflFI GACNNNGTC 1 cut(s) 313
PkrI GCNGC 6 cut(s) 32, 35, 190, 214, 473, 530
PleI GAGTC 5 cut(s) 88, 183, 293, 422, 431
PluTI GGCGCC 1 cut(s) 370
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 5 cut(s) 88, 183, 293, 422, 431
Ppu21I YACGTR 1 cut(s) 362
Psp1406I AACGTT 2 cut(s) 40, 261
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 368, 608
PspPI GGNCC 3 cut(s) 10, 571, 612
PsyI GACNNNGTC 1 cut(s) 313
RsaI GTAC 3 cut(s) 446, 506, 521
RsaNI GTAC 3 cut(s) 445, 505, 520
Rsr2I CGGWCCG 1 cut(s) 612
RsrII CGGWCCG 1 cut(s) 612
SacII CCGCGG 1 cut(s) 346
SalI GTCGAC 2 cut(s) 293, 425
SatI GCNGC 6 cut(s) 31, 34, 189, 213, 472, 529
Sau3AI GATC 3 cut(s) 222, 327, 489
Sau96I GGNCC 3 cut(s) 10, 571, 612
SchI GAGTC 5 cut(s) 89, 184, 293, 422, 431
ScrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
SduI GDGCHC 1 cut(s) 336
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 55, 64
SfoI GGCGCC 1 cut(s) 368
Sfr303I CCGCGG 1 cut(s) 346
SgrBI CCGCGG 1 cut(s) 346
SinI GGWCC 1 cut(s) 612
SspDI GGCGCC 1 cut(s) 366
StyD4I CCNGG 5 cut(s) 420, 480, 507, 573, 614
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 7 cut(s) 43, 264, 364, 383, 399, 539, 566
TaqI TCGA 6 cut(s) 113, 294, 426, 453, 546, 621
TatI WGTACW 1 cut(s) 519
TauI GCSGC 4 cut(s) 33, 191, 215, 531
TfiI GAWTC 1 cut(s) 415
TscAI CASTG 1 cut(s) 390
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 2 cut(s) 33, 471
Tsp45I GTSAC 1 cut(s) 381
TspDTI ATGAA 1 cut(s) 407
TspGWI ACGGA 2 cut(s) 216, 474
TspRI CASTG 1 cut(s) 390
Tth111I GACNNNGTC 1 cut(s) 313
VneI GTGCAC 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 612
XmiI GTMKAC 2 cut(s) 294, 426
XmnI GAANNNNTTC 1 cut(s) 42
ZraI GACGTC 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.