Rroxscaffold_1G00072790

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0013122
Physical Location & Seq
Forward (+)
93805295 .. 93805924
630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00072790.1

Sequence Viewer

Length: 630 bp
ATGGCGAAGGGCCGGAAACTGACTCAGAGCCGCAGCGAACGTTTTCTCGGGAGCTACAGTAGCTACAGCCACTCCCAAGAGTCGCCGGAGCTCGCCGAAGACGATGTCTGGTCGATGGTGGAGACCGTACAGGAGCGGGACGACAACGAGGTCGATAACTCTCAAAGCGAGTGGAGTCCACGCGTCTCCGCCGAGACTAACGGAGGCTTTGCCGCGAGGGGAAGAAGCCGGCGGATTCCACAGGACGATAACAACGTTAGCGGAGGGCTGTCTTTGGCTTTTGTCGAAGACTCGGGAAAGACGGCGTCGTCGCCTCGGATCGTGCACCAATTCCGCGGACATGACAGCGTGGCGTCTCCACGTGGCCACCACATGGCCACGTCACTCCCTGTGAACGTGCCGGACTGGAGCAAGATTCTCCGGGTCGACTCGGTCGACTCGCTGTACGAGTTCGACGACGGCATGGACAGCAGCAACGACCCGGAGATGATTCCCCCACATGAGTACCTGGCGCGTGAGTACACGCGCGGCGCCACGTCGGTTTTCGAGGGGGTGGGCCGGACGTTGAAGGGCCGGGACATGAGGCGGGTTAGGGATGCGGTTTGGAGCCGAACCGGGTTCGATGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

209

Amino Acids

23.33

Weight (kDa)

5.28

Isoelectric Point (pI)

49.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 207 1.1e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 149, 307
AccB1I GGYRCC 1 cut(s) 530
AccB7I CCANNNNNTGG 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 136
AccI GTMKAC 2 cut(s) 426, 435
AccII CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
AclI AACGTT 2 cut(s) 40, 255
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 2 cut(s) 364, 375
AcvI CACGTG 1 cut(s) 362
AcyI GRCGYC 3 cut(s) 305, 353, 531
AfaI GTAC 4 cut(s) 129, 446, 506, 521
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 181
AgsI TTSAA 1 cut(s) 568
AjiI CACGTC 2 cut(s) 381, 537
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 3 cut(s) 54, 63, 91
AluI AGCT 3 cut(s) 54, 63, 91
Alw21I GWGCWC 2 cut(s) 93, 327
Alw26I GTCTC 4 cut(s) 116, 188, 190, 360
Alw44I GTGCAC 1 cut(s) 323
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 2 cut(s) 47, 292
AoxI GGCC 5 cut(s) 10, 364, 375, 556, 571
ApaLI GTGCAC 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 33, 471
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
Asp700I GAANNNNTTC 1 cut(s) 42
AspLEI GCGC 3 cut(s) 514, 528, 533
AspS9I GGNCC 3 cut(s) 10, 556, 571
AsuC2I CCSGG 4 cut(s) 422, 482, 575, 616
AvaI CYCGRG 2 cut(s) 47, 292
BaeGI GKGCMC 1 cut(s) 327
BaeI ACNNNNGTAYC 2 cut(s) 488, 521
BalI TGGCCA 2 cut(s) 366, 377
BanI GGYRCC 1 cut(s) 530
BanII GRGCYC 1 cut(s) 93
BbrPI CACGTG 1 cut(s) 362
BbsI GAAGAC 2 cut(s) 105, 294
Bbv12I GWGCWC 2 cut(s) 93, 327
BbvI GCAGC 2 cut(s) 45, 483
BccI CCATC 2 cut(s) 109, 617
BceAI ACGGC 2 cut(s) 318, 475
BciT130I CCWGG 1 cut(s) 509
BcnI CCSGG 4 cut(s) 422, 482, 575, 616
BcoDI GTCTC 4 cut(s) 116, 188, 190, 360
BfmI CTRYAG 2 cut(s) 55, 64
BfoI RGCGCY 1 cut(s) 534
BisI GCNGC 5 cut(s) 31, 34, 213, 472, 529
BlsI GCNGC 5 cut(s) 32, 35, 214, 473, 530
Bme1390I CCNGG 5 cut(s) 422, 482, 509, 575, 616
BmeT110I CYCGRG 2 cut(s) 47, 292
BmgBI CACGTC 2 cut(s) 381, 537
BmgT120I GGNCC 3 cut(s) 10, 556, 571
BmiI GGNNCC 2 cut(s) 532, 608
BmrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
BmsI GCATC 1 cut(s) 586
BpiI GAAGAC 2 cut(s) 105, 294
BpmI CTGGAG 1 cut(s) 427
BpuMI CCSGG 4 cut(s) 422, 482, 575, 616
BsaAI YACGTR 1 cut(s) 362
BsaHI GRCGYC 3 cut(s) 305, 353, 531
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 2 cut(s) 314, 334
BsaXI ACNNNNNCTCC 4 cut(s) 43, 56, 73, 86
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 410
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 314, 334
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMII CTCAG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 410
BseSI GKGCMC 1 cut(s) 327
BseXI GCAGC 2 cut(s) 45, 483
Bsh1236I CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 5 cut(s) 12, 366, 377, 558, 573
BshNI GGYRCC 1 cut(s) 530
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 2 cut(s) 93, 327
BsiHKCI CYCGRG 2 cut(s) 47, 292
BsiSI CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
BslFI GGGAC 2 cut(s) 152, 590
BslI CCNNNNNNNGG 1 cut(s) 373
BsmAI GTCTC 4 cut(s) 116, 188, 190, 360
BsmBI CGTCTC 2 cut(s) 190, 360
BsmFI GGGAC 2 cut(s) 152, 590
BsnI GGCC 5 cut(s) 12, 366, 377, 558, 573
Bso31I GGTCTC 1 cut(s) 116
BsoBI CYCGRG 2 cut(s) 47, 292
Bsp1286I GDGCHC 2 cut(s) 93, 327
Bsp143I GATC 1 cut(s) 318
BspANI GGCC 5 cut(s) 12, 366, 377, 558, 573
BspCNI CTCAG 1 cut(s) 37
BspFNI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BspLI GGNNCC 2 cut(s) 532, 608
BspPI GGATC 1 cut(s) 326
BspT107I GGYRCC 1 cut(s) 530
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 410
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 2 cut(s) 314, 334
BssMI GATC 1 cut(s) 318
BssNI GRCGYC 3 cut(s) 305, 353, 531
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 59, 127
BstACI GRCGYC 3 cut(s) 305, 353, 531
BstBAI YACGTR 1 cut(s) 362
BstC8I GCNNGC 2 cut(s) 93, 230
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 3 cut(s) 514, 528, 533
BstKTI GATC 1 cut(s) 321
BstMAI GTCTC 4 cut(s) 116, 188, 190, 360
BstMBI GATC 1 cut(s) 318
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 2 cut(s) 60, 468
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 5 cut(s) 420, 480, 507, 573, 614
BstSFI CTRYAG 2 cut(s) 55, 64
BstSLI GKGCMC 1 cut(s) 327
BstUI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
BstV1I GCAGC 2 cut(s) 45, 483
BstV2I GAAGAC 2 cut(s) 105, 294
BsuRI GGCC 5 cut(s) 12, 366, 377, 558, 573
BtgI CCRYGG 1 cut(s) 334
BtrI CACGTC 2 cut(s) 381, 537
BtsCI GGATG 1 cut(s) 601
Cac8I GCNNGC 2 cut(s) 93, 230
CfoI GCGC 3 cut(s) 514, 528, 533
Cfr10I RCCGGY 1 cut(s) 228
Cfr13I GGNCC 3 cut(s) 10, 556, 571
Cfr42I CCGCGG 1 cut(s) 337
CseI GACGC 3 cut(s) 172, 294, 342
Csp6I GTAC 4 cut(s) 128, 445, 505, 520
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 5 cut(s) 341, 373, 463, 500, 580
CviQI GTAC 4 cut(s) 128, 445, 505, 520
DdeI CTNAG 1 cut(s) 24
DinI GGCGCC 1 cut(s) 532
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
DrdI GACNNNNNNGTC 2 cut(s) 149, 307
DseDI GACNNNNNNGTC 2 cut(s) 149, 307
EaeI YGGCCR 2 cut(s) 364, 375
EciI GGCGGA 2 cut(s) 178, 247
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 116
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 1 cut(s) 362
Eco88I CYCGRG 2 cut(s) 47, 292
EcoICRI GAGCTC 1 cut(s) 91
EcoRII CCWGG 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 93
EgeI GGCGCC 1 cut(s) 532
EheI GGCGCC 1 cut(s) 532
Esp3I CGTCTC 2 cut(s) 190, 360
FaeI CATG 5 cut(s) 344, 376, 466, 503, 583
FaiI YATR 5 cut(s) 342, 374, 464, 501, 581
FaqI GGGAC 2 cut(s) 152, 590
FatI CATG 5 cut(s) 340, 372, 462, 499, 579
FauI CCCGC 2 cut(s) 129, 579
FblI GTMKAC 2 cut(s) 426, 435
Fnu4HI GCNGC 5 cut(s) 31, 34, 213, 472, 529
FokI GGATG 1 cut(s) 608
FriOI GRGCYC 1 cut(s) 93
Fsp4HI GCNGC 5 cut(s) 31, 34, 213, 472, 529
GlaI GCGC 3 cut(s) 513, 527, 532
GluI GCNGC 5 cut(s) 31, 34, 213, 472, 529
GsuI CTGGAG 1 cut(s) 427
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 5 cut(s) 12, 366, 377, 558, 573
HapII CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
HgaI GACGC 3 cut(s) 172, 294, 342
HhaI GCGC 3 cut(s) 514, 528, 533
Hin1I GRCGYC 3 cut(s) 305, 353, 531
Hin1II CATG 5 cut(s) 344, 376, 466, 503, 583
Hin6I GCGC 3 cut(s) 512, 526, 531
HinP1I GCGC 3 cut(s) 512, 526, 531
HincII GTYRAC 2 cut(s) 427, 436
HindII GTYRAC 2 cut(s) 427, 436
HinfI GANTC 9 cut(s) 22, 80, 175, 235, 290, 415, 428, 437, 490
HpaII CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
Hpy166II GTNNAC 6 cut(s) 179, 325, 394, 427, 436, 522
Hpy188I TCNGA 2 cut(s) 27, 318
Hpy188III TCNNGA 2 cut(s) 49, 294
Hpy8I GTNNAC 6 cut(s) 179, 325, 394, 427, 436, 522
Hpy99I CGWCG 5 cut(s) 310, 313, 458, 461, 541
HpyAV CCTTC 1 cut(s) 562
HpyCH4III ACNGT 2 cut(s) 59, 127
HpyCH4IV ACGT 7 cut(s) 40, 255, 361, 380, 396, 536, 563
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 468
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 7 cut(s) 40, 255, 361, 380, 396, 536, 563
Hsp92I GRCGYC 3 cut(s) 305, 353, 531
Hsp92II CATG 5 cut(s) 344, 376, 466, 503, 583
HspAI GCGC 3 cut(s) 512, 526, 531
KasI GGCGCC 1 cut(s) 530
KroI GCCGGC 1 cut(s) 228
KroNI GCCGGC 1 cut(s) 230
KspI CCGCGG 1 cut(s) 337
Kzo9I GATC 1 cut(s) 318
LmnI GCTCC 5 cut(s) 51, 88, 133, 408, 606
Lsp1109I GCAGC 2 cut(s) 45, 483
LweI GCATC 1 cut(s) 586
MaeII ACGT 7 cut(s) 40, 255, 361, 380, 396, 536, 563
MaeIII GTNAC 1 cut(s) 381
MalI GATC 1 cut(s) 320
MbiI CCGCTC 1 cut(s) 136
MboI GATC 1 cut(s) 318
MboII GAAGA 3 cut(s) 110, 234, 299
MhlI GDGCHC 2 cut(s) 93, 327
MlsI TGGCCA 2 cut(s) 366, 377
MluCI AATT 1 cut(s) 329
MluI ACGCGT 1 cut(s) 181
MluNI TGGCCA 2 cut(s) 366, 377
Mly113I GGCGCC 1 cut(s) 531
MlyI GAGTC 6 cut(s) 16, 89, 184, 284, 422, 431
MnlI CCTC 7 cut(s) 142, 197, 210, 257, 324, 541, 576
Mox20I TGGCCA 2 cut(s) 366, 377
MroNI GCCGGC 1 cut(s) 228
MroXI GAANNNNTTC 1 cut(s) 42
MscI TGGCCA 2 cut(s) 366, 377
MseI TTAA 1 cut(s) 628
Msp20I TGGCCA 2 cut(s) 366, 377
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 9 cut(s) 13, 86, 229, 401, 421, 482, 559, 574, 615
MspR9I CCNGG 5 cut(s) 422, 482, 509, 575, 616
MteI GCGCNGCGC 1 cut(s) 529
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 6 cut(s) 183, 215, 336, 514, 526, 528
MwoI GCNNNNNNNGC 2 cut(s) 60, 468
NaeI GCCGGC 1 cut(s) 230
NarI GGCGCC 1 cut(s) 531
NciI CCSGG 4 cut(s) 422, 482, 575, 616
NdeII GATC 1 cut(s) 318
NgoMIV GCCGGC 1 cut(s) 228
NlaIII CATG 5 cut(s) 344, 376, 466, 503, 583
NlaIV GGNNCC 2 cut(s) 532, 608
NmeAIII GCCGAG 1 cut(s) 217
NmuCI GTSAC 1 cut(s) 381
PcsI WCGNNNNNNNCGW 4 cut(s) 99, 252, 432, 453
PdiI GCCGGC 1 cut(s) 230
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 235, 415, 490
PflFI GACNNNGTC 3 cut(s) 104, 304, 431
PflMI CCANNNNNTGG 1 cut(s) 373
PkrI GCNGC 5 cut(s) 32, 35, 214, 473, 530
PleI GAGTC 6 cut(s) 16, 88, 183, 284, 422, 431
PluTI GGCGCC 1 cut(s) 534
PmaCI CACGTG 1 cut(s) 362
PmlI CACGTG 1 cut(s) 362
PpsI GAGTC 6 cut(s) 16, 88, 183, 284, 422, 431
Ppu21I YACGTR 1 cut(s) 362
Psp124BI GAGCTC 1 cut(s) 93
Psp1406I AACGTT 2 cut(s) 40, 255
Psp6I CCWGG 1 cut(s) 507
PspCI CACGTG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 2 cut(s) 532, 608
PspPI GGNCC 3 cut(s) 10, 556, 571
PsyI GACNNNGTC 3 cut(s) 104, 304, 431
RsaI GTAC 4 cut(s) 129, 446, 506, 521
RsaNI GTAC 4 cut(s) 128, 445, 505, 520
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 337
SalI GTCGAC 2 cut(s) 425, 434
SaqAI TTAA 1 cut(s) 628
SatI GCNGC 5 cut(s) 31, 34, 213, 472, 529
Sau3AI GATC 1 cut(s) 318
Sau96I GGNCC 3 cut(s) 10, 556, 571
SchI GAGTC 6 cut(s) 16, 89, 184, 284, 422, 431
ScrFI CCNGG 5 cut(s) 422, 482, 509, 575, 616
SduI GDGCHC 2 cut(s) 93, 327
SfaNI GCATC 1 cut(s) 586
SfcI CTRYAG 2 cut(s) 55, 64
SfoI GGCGCC 1 cut(s) 532
Sfr303I CCGCGG 1 cut(s) 337
SgrBI CCGCGG 1 cut(s) 337
Sse9I AATT 1 cut(s) 329
SspDI GGCGCC 1 cut(s) 530
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 5 cut(s) 420, 480, 507, 573, 614
TaaI ACNGT 2 cut(s) 59, 127
TaiI ACGT 7 cut(s) 43, 258, 364, 383, 399, 539, 566
TaqI TCGA 8 cut(s) 113, 153, 285, 426, 435, 453, 546, 621
TaqII GACCGA 1 cut(s) 421
TasI AATT 1 cut(s) 329
TatI WGTACW 1 cut(s) 519
TauI GCSGC 3 cut(s) 33, 215, 531
TfiI GAWTC 3 cut(s) 235, 415, 490
Tru1I TTAA 1 cut(s) 628
Tru9I TTAA 1 cut(s) 628
TseFI GTSAC 1 cut(s) 381
TseI GCWGC 2 cut(s) 33, 471
Tsp45I GTSAC 1 cut(s) 381
TspGWI ACGGA 1 cut(s) 216
Tth111I GACNNNGTC 3 cut(s) 104, 304, 431
Van91I CCANNNNNTGG 1 cut(s) 373
VneI GTGCAC 1 cut(s) 323
XmiI GTMKAC 2 cut(s) 426, 435
XmnI GAANNNNTTC 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.