AT1G61930

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0013122
Physical Location & Seq
Forward (+)
22893101 .. 22894064
964 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61930.1

Sequence Viewer

Length: 612 bp
ATGGCAAAAGGTCGAAAGCCGACGACAATGAACCGGAGCGATCGATACCTTGGAAGCTACACTTACGGTGACAGTCACGGAAACTCCGTTACCGACGAATTAGAGCTCGGTGAGGAAGACATCTGGTCACCGGCCGTCATTCACGACGACACCACCGAGAATGAGGAATCCTACGGCACGTGGAACTTACGCGCTACCTTGGGAAAAAACGGGCGCGTGGGAGGATTGTCGCTGGCTTTCGAGGGCTCTTTGGTTGCTCCGCCGTCGTCTTCGCCGATGATAGTGCAGAAGATTCACGGCGGAGGAGGTGAGGGAGAGGAAGACCGGAGAAAATTGGCGTCTTCGGCGCCGGTAAACGTACCGGACTGGAGTAAGATATACCGAGTTGACTCGGTTGAGTCAATACACGAGTTAGACGACGAGGATGACGAGGATGAGGAATCCGGGATGATGCCGCCGCATGAGTACCTTGCTAAGAGTCAAGCACGGCGGAGTAGAAAGATCGGAGGTGGTGGTGCGTCGGTGTTTGACGGCGTCGGAAGGACTCTCAAAGGCAGAGAACTAAGGCGCGTTCGTGACGCGATTTGGAGCCAAACAGGGTTCTACGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

203

Amino Acids

22.25

Weight (kDa)

5.03

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 35 - 202 2.4e-40 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AccII CGCG 4 cut(s) 192, 216, 570, 581
AciI CCGC 5 cut(s) 260, 300, 455, 458, 490
AcoI YGGCCR 1 cut(s) 132
AcvI CACGTG 1 cut(s) 180
AcyI GRCGYC 3 cut(s) 338, 347, 534
AfaI GTAC 2 cut(s) 360, 467
AhdI GACNNNNNGTC 1 cut(s) 124
AluBI AGCT 2 cut(s) 57, 106
AluI AGCT 2 cut(s) 57, 106
Alw21I GWGCWC 1 cut(s) 108
AoxI GGCC 1 cut(s) 132
AspLEI GCGC 4 cut(s) 194, 216, 349, 570
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 80, 120, 122, 320
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 108, 248
BauI CACGAG 1 cut(s) 407
BbrPI CACGTG 1 cut(s) 180
BbsI GAAGAC 4 cut(s) 123, 261, 327, 333
Bbv12I GWGCWC 1 cut(s) 108
BceAI ACGGC 6 cut(s) 119, 190, 247, 313, 503, 547
BcgI CGANNNNNNTGC 2 cut(s) 265, 299
BcnI CCSGG 1 cut(s) 445
BfoI RGCGCY 1 cut(s) 350
BisI GCNGC 2 cut(s) 455, 458
BlsI GCNGC 2 cut(s) 456, 459
Bme1390I CCNGG 1 cut(s) 445
BmeRI GACNNNNNGTC 1 cut(s) 124
BmiI GGNNCC 2 cut(s) 348, 590
BmrFI CCNGG 1 cut(s) 445
BmsI GCATC 1 cut(s) 441
BpiI GAAGAC 4 cut(s) 123, 261, 327, 333
BpmI CTGGAG 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 445
Bsa29I ATCGAT 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 180
BsaHI GRCGYC 3 cut(s) 338, 347, 534
BsaJI CCNNGG 2 cut(s) 49, 198
BsaWI WCCGGW 3 cut(s) 33, 324, 361
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bse118I RCCGGY 2 cut(s) 130, 349
Bse1I ACTGG 1 cut(s) 371
BseCI ATCGAT 1 cut(s) 43
BseDI CCNNGG 2 cut(s) 49, 198
BseGI GGATG 3 cut(s) 430, 439, 453
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 318
BseX3I CGGCCG 1 cut(s) 132
BsgI GTGCAG 1 cut(s) 305
Bsh1236I CGCG 4 cut(s) 192, 216, 570, 581
Bsh1285I CGRYCG 2 cut(s) 43, 135
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 346
BshVI ATCGAT 1 cut(s) 43
BsiEI CGRYCG 2 cut(s) 43, 135
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 6 cut(s) 34, 131, 325, 350, 362, 444
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 108, 248
Bsp143I GATC 2 cut(s) 40, 501
BspACI CCGC 5 cut(s) 260, 300, 455, 458, 490
BspANI GGCC 1 cut(s) 134
BspDI ATCGAT 1 cut(s) 43
BspFNI CGCG 4 cut(s) 192, 216, 570, 581
BspLI GGNNCC 2 cut(s) 348, 590
BspT107I GGYRCC 1 cut(s) 346
BsrFI RCCGGY 2 cut(s) 130, 349
BsrI ACTGG 1 cut(s) 371
BssAI RCCGGY 2 cut(s) 130, 349
BssECI CCNNGG 2 cut(s) 49, 198
BssMI GATC 2 cut(s) 40, 501
BssNI GRCGYC 3 cut(s) 338, 347, 534
BssSI CACGAG 1 cut(s) 407
BssT1I CCWWGG 2 cut(s) 49, 198
Bst2BI CACGAG 1 cut(s) 407
Bst4CI ACNGT 2 cut(s) 68, 74
BstACI GRCGYC 3 cut(s) 338, 347, 534
BstBAI YACGTR 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 474, 563
BstEII GGTNACC 1 cut(s) 126
BstF5I GGATG 3 cut(s) 430, 439, 453
BstFNI CGCG 4 cut(s) 192, 216, 570, 581
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 4 cut(s) 194, 216, 349, 570
BstKTI GATC 2 cut(s) 43, 504
BstMBI GATC 2 cut(s) 40, 501
BstMCI CGRYCG 2 cut(s) 43, 135
BstMWI GCNNNNNNNGC 1 cut(s) 344
BstPI GGTNACC 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 443
BstUI CGCG 4 cut(s) 192, 216, 570, 581
BstV2I GAAGAC 4 cut(s) 123, 261, 327, 333
BstZI CGGCCG 1 cut(s) 132
Bsu15I ATCGAT 1 cut(s) 43
BsuRI GGCC 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 43
BtsCI GGATG 3 cut(s) 430, 439, 453
Cac8I GCNNGC 1 cut(s) 234
CfoI GCGC 4 cut(s) 194, 216, 349, 570
Cfr10I RCCGGY 2 cut(s) 130, 349
ClaI ATCGAT 1 cut(s) 43
CseI GACGC 4 cut(s) 327, 507, 523, 587
Csp6I GTAC 2 cut(s) 359, 466
CviAII CATG 1 cut(s) 461
CviJI RGCY 8 cut(s) 19, 57, 106, 134, 236, 246, 591, 609
CviKI_1 RGCY 8 cut(s) 19, 57, 106, 134, 236, 246, 591, 609
CviQI GTAC 2 cut(s) 359, 466
DdeI CTNAG 2 cut(s) 474, 563
DinI GGCGCC 1 cut(s) 348
DpnI GATC 2 cut(s) 42, 503
DpnII GATC 2 cut(s) 40, 501
DriI GACNNNNNGTC 1 cut(s) 124
EaeI YGGCCR 1 cut(s) 132
EagI CGGCCG 1 cut(s) 132
Eam1105I GACNNNNNGTC 1 cut(s) 124
EciI GGCGGA 3 cut(s) 249, 315, 505
Ecl136II GAGCTC 1 cut(s) 106
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 2 cut(s) 49, 198
Eco24I GRGCYC 2 cut(s) 108, 248
Eco52I CGGCCG 1 cut(s) 132
Eco53kI GAGCTC 1 cut(s) 106
Eco72I CACGTG 1 cut(s) 180
Eco91I GGTNACC 1 cut(s) 126
EcoICRI GAGCTC 1 cut(s) 106
EcoO65I GGTNACC 1 cut(s) 126
EcoT14I CCWWGG 2 cut(s) 49, 198
EcoT38I GRGCYC 2 cut(s) 108, 248
EgeI GGCGCC 1 cut(s) 348
EheI GGCGCC 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 49, 198
FaeI CATG 1 cut(s) 464
FaiI YATR 2 cut(s) 379, 462
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 1 cut(s) 460
Fnu4HI GCNGC 2 cut(s) 455, 458
FokI GGATG 3 cut(s) 437, 446, 460
FriOI GRGCYC 2 cut(s) 108, 248
Fsp4HI GCNGC 2 cut(s) 455, 458
GlaI GCGC 4 cut(s) 193, 215, 348, 569
GluI GCNGC 2 cut(s) 455, 458
GsuI CTGGAG 1 cut(s) 388
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 1 cut(s) 134
HapII CCGG 6 cut(s) 34, 131, 325, 350, 362, 444
HgaI GACGC 4 cut(s) 327, 507, 523, 587
HhaI GCGC 4 cut(s) 194, 216, 349, 570
Hin1I GRCGYC 3 cut(s) 338, 347, 534
Hin1II CATG 1 cut(s) 464
Hin6I GCGC 4 cut(s) 192, 214, 347, 568
HinP1I GCGC 4 cut(s) 192, 214, 347, 568
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 7 cut(s) 167, 292, 389, 398, 440, 478, 544
HpaII CCGG 6 cut(s) 34, 131, 325, 350, 362, 444
HphI GGTGA 4 cut(s) 80, 120, 122, 320
Hpy166II GTNNAC 2 cut(s) 355, 388
Hpy188I TCNGA 2 cut(s) 506, 539
Hpy188III TCNNGA 2 cut(s) 143, 575
Hpy8I GTNNAC 2 cut(s) 355, 388
Hpy99I CGWCG 7 cut(s) 25, 98, 149, 268, 422, 523, 539
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 2 cut(s) 68, 74
HpyCH4IV ACGT 2 cut(s) 179, 357
HpyCH4V TGCA 1 cut(s) 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 344
HpyF3I CTNAG 2 cut(s) 474, 563
HpySE526I ACGT 2 cut(s) 179, 357
Hsp92I GRCGYC 3 cut(s) 338, 347, 534
Hsp92II CATG 1 cut(s) 464
HspAI GCGC 4 cut(s) 192, 214, 347, 568
KasI GGCGCC 1 cut(s) 346
Kzo9I GATC 2 cut(s) 40, 501
LmnI GCTCC 3 cut(s) 36, 262, 588
LweI GCATC 1 cut(s) 441
MaeII ACGT 2 cut(s) 179, 357
MaeIII GTNAC 5 cut(s) 68, 74, 88, 126, 575
MalI GATC 2 cut(s) 42, 503
MboI GATC 2 cut(s) 40, 501
MboII GAAGA 5 cut(s) 128, 261, 301, 332, 333
MhlI GDGCHC 2 cut(s) 108, 248
MluCI AATT 2 cut(s) 98, 332
Mly113I GGCGCC 1 cut(s) 347
MlyI GAGTC 4 cut(s) 383, 407, 487, 538
MmeI TCCRAC 1 cut(s) 517
MspI CCGG 6 cut(s) 34, 131, 325, 350, 362, 444
MspR9I CCNGG 1 cut(s) 445
MvnI CGCG 4 cut(s) 192, 216, 570, 581
MwoI GCNNNNNNNGC 1 cut(s) 344
NarI GGCGCC 1 cut(s) 347
NciI CCSGG 1 cut(s) 445
NdeII GATC 2 cut(s) 40, 501
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 2 cut(s) 348, 590
NmuCI GTSAC 4 cut(s) 68, 74, 126, 575
PcsI WCGNNNNNNNCGW 5 cut(s) 84, 153, 272, 414, 426
PfeI GAWTC 3 cut(s) 167, 292, 440
PflFI GACNNNGTC 1 cut(s) 533
PfoI TCCNGGA 1 cut(s) 443
PkrI GCNGC 2 cut(s) 456, 459
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 4 cut(s) 383, 406, 486, 538
PluTI GGCGCC 1 cut(s) 350
PmaCI CACGTG 1 cut(s) 180
PmlI CACGTG 1 cut(s) 180
PpsI GAGTC 4 cut(s) 383, 406, 486, 538
Ppu21I YACGTR 1 cut(s) 180
Psp124BI GAGCTC 1 cut(s) 108
PspCI CACGTG 1 cut(s) 180
PspEI GGTNACC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 348, 590
PsyI GACNNNGTC 1 cut(s) 533
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 2 cut(s) 360, 467
RsaNI GTAC 2 cut(s) 359, 466
SacI GAGCTC 1 cut(s) 108
SatI GCNGC 2 cut(s) 455, 458
Sau3AI GATC 2 cut(s) 40, 501
SchI GAGTC 4 cut(s) 383, 407, 487, 538
ScrFI CCNGG 1 cut(s) 445
SduI GDGCHC 2 cut(s) 108, 248
SfaNI GCATC 1 cut(s) 441
SfoI GGCGCC 1 cut(s) 348
Sse9I AATT 2 cut(s) 98, 332
SsiI CCGC 5 cut(s) 260, 300, 455, 458, 490
SspDI GGCGCC 1 cut(s) 346
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 1 cut(s) 443
StyI CCWWGG 2 cut(s) 49, 198
TaaI ACNGT 2 cut(s) 68, 74
TaiI ACGT 2 cut(s) 182, 360
TaqI TCGA 3 cut(s) 13, 43, 240
TasI AATT 2 cut(s) 98, 332
TauI GCSGC 2 cut(s) 457, 460
TfiI GAWTC 3 cut(s) 167, 292, 440
TseFI GTSAC 4 cut(s) 68, 74, 126, 575
Tsp45I GTSAC 4 cut(s) 68, 74, 126, 575
TspDTI ATGAA 1 cut(s) 44
TspGWI ACGGA 2 cut(s) 76, 93
Tth111I GACNNNGTC 1 cut(s) 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.