pycom10g27160

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0013122
Physical Location & Seq
Forward (+)
28216124 .. 28216741
618 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g27160.1

Sequence Viewer

Length: 618 bp
ATGGCGAAGGGCCGGAAACTGACGCAGAGCCGCAGCGAACGGTTGCTCGGGACCTACAGCAGCTACAGCCACGCCCATGACTCGCCGGAGCTCGGCGAGGACGATGTCTGGTCGATGGTCAACAGCGTCGACGAGAGGGAGGACCACGAAAACGAGGACTCGCAGGGCGAGTGGAGCCCACACGCCTTCCCGGAGAGCAACGGTGGTATTCAGGCAAGGAGGGGCCGCCGAATTGCCAGAGACGATCGCAACGTGGGCGGGCTGTCATTGGCGTTTGACGATTCTGGCAAGACGGTGTCGTCGCCTCGGGTCGTGCACCAGTTCCGCGGACACGACAGCGTGGCGTCCCCACGTGGGCACCACGTGGCCACGTCAGCTCCCGTGAACGTGCCGGACTGGAGCAAGATTCTCCGGGTCGACTCAGTGGACTCGCTGTATGAAATGGGCGACGGCTTAGATGGCAATGACTCGGAGATGATTCCCCCACACGAGTACCTGGCGCGAGAGTCCACGCGCGGGGCAACGTCGGTTTTCGAAGGCGTAGGGCGAACCTTGAAGGGACGGGACATGAGGCGGGTCAGGGATGCGGTGTGGAGCCGGACCGGGTTTGATGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

206

Amino Acids

22.72

Weight (kDa)

5.71

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 30 - 203 1.9e-41 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013122)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G11700 AT1G61930
fragaria_vesca FvH4_3g02140
malus_domestica MD05G1345500.v1.1 MD10G1320900.v1.1
prunus_persica Prupe.4G021400_v2.0.a1
pyrus_communis pycom10g27160
rosa_chinensis RchiOBHm_Chr5g0003211
rosa_laevigata RLG00000031087
rosa_multiflora Rmu_sc0000146.1_g000038
rosa_roxburghii Rroxscaffold_1G00072790
rosa_rugosa Rorug04G0401400
rosa_samantha Rh5AG026500 Rh5BG027700 Rh5CG029300 Rh5DG026000
rosa_wichuraiana Rw0G023550 Rw5G002440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 357
AccI GTMKAC 2 cut(s) 129, 417
AccII CGCG 4 cut(s) 327, 502, 514, 516
AciI CCGC 8 cut(s) 31, 226, 258, 325, 327, 516, 574, 587
AcoI YGGCCR 1 cut(s) 366
AcvI CACGTG 2 cut(s) 353, 364
AcyI GRCGYC 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 494
AfiI CCNNNNNNNGG 3 cut(s) 92, 354, 516
AgsI TTSAA 1 cut(s) 556
AjiI CACGTC 1 cut(s) 372
AjnI CCWGG 1 cut(s) 495
AluBI AGCT 3 cut(s) 63, 91, 377
AluI AGCT 3 cut(s) 63, 91, 377
Alw21I GWGCWC 2 cut(s) 93, 318
Alw26I GTCTC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 314
Ama87I CYCGRG 2 cut(s) 47, 306
AoxI GGCC 3 cut(s) 10, 223, 366
ApaLI GTGCAC 1 cut(s) 314
ApeKI GCWGC 2 cut(s) 33, 60
AspLEI GCGC 2 cut(s) 502, 516
AspS9I GGNCC 5 cut(s) 10, 51, 142, 223, 600
AsuC2I CCSGG 3 cut(s) 191, 413, 604
AsuII TTCGAA 1 cut(s) 534
AvaI CYCGRG 2 cut(s) 47, 306
AvaII GGWCC 3 cut(s) 51, 142, 600
BaeGI GKGCMC 2 cut(s) 318, 360
BaeI ACNNNNGTAYC 2 cut(s) 476, 509
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 93, 179
BauI CACGAG 1 cut(s) 488
BbrPI CACGTG 2 cut(s) 353, 364
Bbv12I GWGCWC 2 cut(s) 93, 318
BbvI GCAGC 2 cut(s) 45, 72
BccI CCATC 3 cut(s) 109, 452, 605
BceAI ACGGC 1 cut(s) 466
BciT130I CCWGG 1 cut(s) 497
BcnI CCSGG 3 cut(s) 191, 413, 604
BcoDI GTCTC 1 cut(s) 234
BfmI CTRYAG 2 cut(s) 55, 64
BisI GCNGC 4 cut(s) 31, 34, 61, 226
BlsI GCNGC 4 cut(s) 32, 35, 62, 227
Bme1390I CCNGG 4 cut(s) 191, 413, 497, 604
Bme18I GGWCC 3 cut(s) 51, 142, 600
BmeT110I CYCGRG 2 cut(s) 47, 306
BmgBI CACGTC 1 cut(s) 372
BmgT120I GGNCC 5 cut(s) 10, 51, 142, 223, 600
BmiI GGNNCC 5 cut(s) 52, 176, 224, 359, 596
BmrFI CCNGG 4 cut(s) 191, 413, 497, 604
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 418
Bpu14I TTCGAA 1 cut(s) 534
BpuMI CCSGG 3 cut(s) 191, 413, 604
BsaAI YACGTR 2 cut(s) 353, 364
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 305, 325
BsaXI ACNNNNNCTCC 2 cut(s) 361, 391
Bsc4I CCNNNNNNNGG 3 cut(s) 92, 354, 516
Bse1I ACTGG 2 cut(s) 319, 401
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 2 cut(s) 305, 325
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 3 cut(s) 92, 354, 516
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 2 cut(s) 319, 401
BseSI GKGCMC 2 cut(s) 318, 360
BseXI GCAGC 2 cut(s) 45, 72
Bsh1236I CGCG 4 cut(s) 327, 502, 514, 516
Bsh1285I CGRYCG 1 cut(s) 247
BshFI GGCC 3 cut(s) 12, 225, 368
BshNI GGYRCC 1 cut(s) 357
BsiEI CGRYCG 1 cut(s) 247
BsiHKAI GWGCWC 2 cut(s) 93, 318
BsiHKCI CYCGRG 2 cut(s) 47, 306
BsiSI CCGG 7 cut(s) 13, 86, 191, 392, 412, 598, 603
BslFI GGGAC 4 cut(s) 64, 331, 573, 578
BslI CCNNNNNNNGG 3 cut(s) 92, 354, 516
BsmAI GTCTC 1 cut(s) 234
BsmBI CGTCTC 1 cut(s) 234
BsmFI GGGAC 4 cut(s) 64, 331, 573, 578
BsnI GGCC 3 cut(s) 12, 225, 368
BsoBI CYCGRG 2 cut(s) 47, 306
Bsp119I TTCGAA 1 cut(s) 534
Bsp1286I GDGCHC 4 cut(s) 93, 179, 318, 360
Bsp143I GATC 1 cut(s) 244
BspACI CCGC 8 cut(s) 31, 226, 258, 325, 327, 516, 574, 587
BspANI GGCC 3 cut(s) 12, 225, 368
BspCNI CTCAG 1 cut(s) 434
BspFNI CGCG 4 cut(s) 327, 502, 514, 516
BspLI GGNNCC 5 cut(s) 52, 176, 224, 359, 596
BspT104I TTCGAA 1 cut(s) 534
BspT107I GGYRCC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 469
BsrI ACTGG 2 cut(s) 319, 401
BssECI CCNNGG 2 cut(s) 305, 325
BssMI GATC 1 cut(s) 244
BssNI GRCGYC 1 cut(s) 344
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 3 cut(s) 42, 203, 295
BstACI GRCGYC 1 cut(s) 344
BstBAI YACGTR 2 cut(s) 353, 364
BstBI TTCGAA 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 260
BstDEI CTNAG 2 cut(s) 421, 454
BstDSI CCRYGG 1 cut(s) 325
BstF5I GGATG 1 cut(s) 589
BstFNI CGCG 4 cut(s) 327, 502, 514, 516
BstHHI GCGC 2 cut(s) 502, 516
BstKTI GATC 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 244
BstMCI CGRYCG 1 cut(s) 247
BstMWI GCNNNNNNNGC 5 cut(s) 66, 174, 255, 374, 459
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 4 cut(s) 189, 411, 495, 602
BstSFI CTRYAG 2 cut(s) 55, 64
BstSLI GKGCMC 2 cut(s) 318, 360
BstUI CGCG 4 cut(s) 327, 502, 514, 516
BstV1I GCAGC 2 cut(s) 45, 72
BsuRI GGCC 3 cut(s) 12, 225, 368
BtgI CCRYGG 1 cut(s) 325
BtrI CACGTC 1 cut(s) 372
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 429
Cac8I GCNNGC 1 cut(s) 260
CfoI GCGC 2 cut(s) 502, 516
Cfr13I GGNCC 5 cut(s) 10, 51, 142, 223, 600
Cfr42I CCGCGG 1 cut(s) 328
CpoI CGGWCCG 1 cut(s) 600
CseI GACGC 3 cut(s) 31, 115, 333
Csp6I GTAC 1 cut(s) 493
CspI CGGWCCG 1 cut(s) 600
CviAII CATG 2 cut(s) 77, 568
CviQI GTAC 1 cut(s) 493
DdeI CTNAG 2 cut(s) 421, 454
DpnI GATC 1 cut(s) 246
DpnII GATC 1 cut(s) 244
DraIII CACNNNGTG 1 cut(s) 364
DrdI GACNNNNNNGTC 1 cut(s) 298
DseDI GACNNNNNNGTC 1 cut(s) 298
EaeI YGGCCR 1 cut(s) 366
Ecl136II GAGCTC 1 cut(s) 91
Eco24I GRGCYC 2 cut(s) 93, 179
Eco47I GGWCC 3 cut(s) 51, 142, 600
Eco53kI GAGCTC 1 cut(s) 91
Eco72I CACGTG 2 cut(s) 353, 364
Eco88I CYCGRG 2 cut(s) 47, 306
EcoICRI GAGCTC 1 cut(s) 91
EcoO109I RGGNCCY 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 495
EcoT38I GRGCYC 2 cut(s) 93, 179
Esp3I CGTCTC 1 cut(s) 234
FaeI CATG 2 cut(s) 80, 571
FaiI YATR 3 cut(s) 78, 438, 569
FaqI GGGAC 4 cut(s) 64, 331, 573, 578
FatI CATG 2 cut(s) 76, 567
FauI CCCGC 3 cut(s) 251, 509, 567
FblI GTMKAC 2 cut(s) 129, 417
Fnu4HI GCNGC 4 cut(s) 31, 34, 61, 226
FokI GGATG 1 cut(s) 596
FriOI GRGCYC 2 cut(s) 93, 179
Fsp4HI GCNGC 4 cut(s) 31, 34, 61, 226
GlaI GCGC 2 cut(s) 501, 515
GluI GCNGC 4 cut(s) 31, 34, 61, 226
GsuI CTGGAG 1 cut(s) 418
HaeIII GGCC 3 cut(s) 12, 225, 368
HapII CCGG 7 cut(s) 13, 86, 191, 392, 412, 598, 603
HgaI GACGC 3 cut(s) 31, 115, 333
HhaI GCGC 2 cut(s) 502, 516
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 2 cut(s) 80, 571
Hin6I GCGC 2 cut(s) 500, 514
HinP1I GCGC 2 cut(s) 500, 514
HincII GTYRAC 3 cut(s) 121, 130, 418
HindII GTYRAC 3 cut(s) 121, 130, 418
HinfI GANTC 9 cut(s) 80, 158, 281, 406, 419, 428, 467, 478, 506
HpaII CCGG 7 cut(s) 13, 86, 191, 392, 412, 598, 603
Hpy166II GTNNAC 7 cut(s) 121, 130, 316, 385, 418, 427, 510
Hpy188I TCNGA 1 cut(s) 472
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 7 cut(s) 121, 130, 316, 385, 418, 427, 510
Hpy99I CGWCG 5 cut(s) 131, 134, 304, 452, 529
HpyAV CCTTC 3 cut(s) 196, 530, 550
HpyCH4III ACNGT 3 cut(s) 42, 203, 295
HpyCH4IV ACGT 6 cut(s) 252, 352, 363, 371, 387, 524
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 174, 255, 374, 459
HpyF3I CTNAG 2 cut(s) 421, 454
HpySE526I ACGT 6 cut(s) 252, 352, 363, 371, 387, 524
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 2 cut(s) 80, 571
HspAI GCGC 2 cut(s) 500, 514
KspI CCGCGG 1 cut(s) 328
Kzo9I GATC 1 cut(s) 244
LmnI GCTCC 5 cut(s) 88, 174, 382, 399, 594
Lsp1109I GCAGC 2 cut(s) 45, 72
LweI GCATC 1 cut(s) 574
MaeII ACGT 6 cut(s) 252, 352, 363, 371, 387, 524
MalI GATC 1 cut(s) 246
MboI GATC 1 cut(s) 244
MhlI GDGCHC 4 cut(s) 93, 179, 318, 360
MlsI TGGCCA 1 cut(s) 368
MluCI AATT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 6 cut(s) 74, 152, 413, 422, 461, 515
MnlI CCTC 7 cut(s) 91, 129, 133, 148, 213, 315, 564
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MslI CAYNNNNRTG 1 cut(s) 75
Msp20I TGGCCA 1 cut(s) 368
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 7 cut(s) 13, 86, 191, 392, 412, 598, 603
MspR9I CCNGG 4 cut(s) 191, 413, 497, 604
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 4 cut(s) 327, 502, 514, 516
MwoI GCNNNNNNNGC 5 cut(s) 66, 174, 255, 374, 459
NciI CCSGG 3 cut(s) 191, 413, 604
NdeII GATC 1 cut(s) 244
NlaIII CATG 2 cut(s) 80, 571
NlaIV GGNNCC 5 cut(s) 52, 176, 224, 359, 596
NmeAIII GCCGAG 1 cut(s) 72
NspV TTCGAA 1 cut(s) 534
PcsI WCGNNNNNNNCGW 2 cut(s) 99, 249
PfeI GAWTC 3 cut(s) 281, 406, 478
PflFI GACNNNGTC 2 cut(s) 104, 295
PfoI TCCNGGA 1 cut(s) 189
PkrI GCNGC 4 cut(s) 32, 35, 62, 227
Ple19I CGATCG 1 cut(s) 247
PleI GAGTC 6 cut(s) 74, 152, 413, 422, 461, 514
PmaCI CACGTG 2 cut(s) 353, 364
PmlI CACGTG 2 cut(s) 353, 364
PpsI GAGTC 6 cut(s) 74, 152, 413, 422, 461, 514
Ppu21I YACGTR 2 cut(s) 353, 364
PpuMI RGGWCCY 1 cut(s) 51
Psp124BI GAGCTC 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 51
Psp6I CCWGG 1 cut(s) 495
PspCI CACGTG 2 cut(s) 353, 364
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 5 cut(s) 52, 176, 224, 359, 596
PspPI GGNCC 5 cut(s) 10, 51, 142, 223, 600
PspPPI RGGWCCY 1 cut(s) 51
PsyI GACNNNGTC 2 cut(s) 104, 295
PvuI CGATCG 1 cut(s) 247
RsaI GTAC 1 cut(s) 494
RsaNI GTAC 1 cut(s) 493
RseI CAYNNNNRTG 1 cut(s) 75
Rsr2I CGGWCCG 1 cut(s) 600
RsrII CGGWCCG 1 cut(s) 600
SacI GAGCTC 1 cut(s) 93
SacII CCGCGG 1 cut(s) 328
SalI GTCGAC 2 cut(s) 128, 416
SatI GCNGC 4 cut(s) 31, 34, 61, 226
Sau3AI GATC 1 cut(s) 244
Sau96I GGNCC 5 cut(s) 10, 51, 142, 223, 600
SchI GAGTC 6 cut(s) 74, 152, 413, 422, 461, 515
ScrFI CCNGG 4 cut(s) 191, 413, 497, 604
SduI GDGCHC 4 cut(s) 93, 179, 318, 360
SfaNI GCATC 1 cut(s) 574
SfcI CTRYAG 2 cut(s) 55, 64
Sfr303I CCGCGG 1 cut(s) 328
SfuI TTCGAA 1 cut(s) 534
SgrBI CCGCGG 1 cut(s) 328
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 3 cut(s) 51, 142, 600
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 1 cut(s) 231
SsiI CCGC 8 cut(s) 31, 226, 258, 325, 327, 516, 574, 587
SstI GAGCTC 1 cut(s) 93
StyD4I CCNGG 4 cut(s) 189, 411, 495, 602
TaaI ACNGT 3 cut(s) 42, 203, 295
TaiI ACGT 6 cut(s) 255, 355, 366, 374, 390, 527
TaqI TCGA 4 cut(s) 113, 129, 417, 534
TasI AATT 1 cut(s) 231
TauI GCSGC 2 cut(s) 33, 228
TfiI GAWTC 3 cut(s) 281, 406, 478
TscAI CASTG 1 cut(s) 429
TseI GCWGC 2 cut(s) 33, 60
TspDTI ATGAA 1 cut(s) 453
TspRI CASTG 1 cut(s) 429
Tth111I GACNNNGTC 2 cut(s) 104, 295
VneI GTGCAC 1 cut(s) 314
VpaK11BI GGWCC 3 cut(s) 51, 142, 600
XmiI GTMKAC 2 cut(s) 129, 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.