AT1G12010

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4056165 .. 4057968
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12010.1

Sequence Viewer

Length: 963 bp
ATGGAGATGAACATTAAGTTTCCAGTTATAGACTTGTCTAAGCTCAATGGTGAAGAGAGAGACCAAACCATGGCTTTGATCGACGATGCTTGTCAAAACTGGGGCTTCTTCGAGCTGGTGAACCATGGACTACCATATGATCTAATGGACAACATTGAGAGGATGACAAAGGAACACTACAAGAAACATATGGAACAAAAGTTCAAAGAAATGCTTCGTTCCAAAGGTTTAGATACCCTCGAGACCGAAGTTGAAGATGTCGATTGGGAAAGCACTTTCTACCTCCATCATCTCCCTCAATCTAACCTATACGACATCCCTGATATGTCAAATGAATACCGATTGGCAATGAAGGATTTTGGGAAGAGGCTTGAGATTCTAGCTGAAGAGCTATTGGACTTGTTGTGTGAGAATCTAGGGTTGGAGAAAGGGTACTTGAAGAAGGTGTTTCATGGGACAACGGGTCCAACTTTTGCGACAAAGCTTAGCAACTATCCACCATGTCCTAAACCAGAGATGATCAAAGGGCTTAGGGCTCACACAGATGCAGGAGGCCTCATTTTGCTGTTTCAAGATGATAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGATTGGGTTGATGTTCCTCCTCTCAAGCATTCCATTGTCATCAACCTTGGTGACCAACTTGAGGTGATAACAAACGGGAAGTACAAGAGTGTAATGCACCGTGTGATGACCCAGAAAGAAGGAAACAGGATGTCTATCGCGTCGTTTTACAACCCCGGAAGCGATGCTGAGATCTCTCCGGCAACATCTCTTGTGGATAAAGACTCAAAATACCCAAGCTTTGTGTTTGATGACTACATGAAACTCTATGCCGGACTCAAGTTTCAGGCCAAGGAGCCACGGTTCGAGGCGATGAAAAATGCTGAAGCAGCTGCGGATTTGAATCCGGTGGCTGTGGTTGAGACATTCTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.53

Weight (kDa)

5.09

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 8 - 101 1.5e-18 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 163 - 256 1e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12010 AT1G62380
fragaria_vesca FvH4_3g01280
malus_domestica MD05G1354000.v1.1 MD10G1328100.v1.1
prunus_persica Prupe.4G013800_v2.0.a1
pyrus_communis pycom05g32140 pycom10g27800 pycom17g07320
rosa_chinensis RchiOBHm_Chr5g0001831
rosa_laevigata RLG00000030975
rosa_multiflora Rmu_ssc0000237.1_g000010
rosa_roxburghii Rroxscaffold_1G00071260 Rroxscaffold_1G00074520
rosa_rugosa Rorug04G0393500
rosa_samantha Rh5DG016100
rosa_wichuraiana Rw5G001410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 70
AccII CGCG 1 cut(s) 752
AciI CCGC 1 cut(s) 926
AcuI CTGAAG 2 cut(s) 405, 936
AdeI CACNNNGTG 1 cut(s) 715
AfaI GTAC 2 cut(s) 434, 695
AfiI CCNNNNNNNGG 2 cut(s) 70, 673
AgsI TTSAA 5 cut(s) 205, 254, 439, 572, 934
AhdI GACNNNNNGTC 1 cut(s) 462
AjuI GAANNNNNNNTTGG 2 cut(s) 404, 436
AloI GAACNNNNNNTCC 4 cut(s) 185, 217, 878, 910
AluBI AGCT 8 cut(s) 43, 115, 383, 391, 484, 598, 831, 923
AluI AGCT 8 cut(s) 43, 115, 383, 391, 484, 598, 831, 923
Alw26I GTCTC 4 cut(s) 54, 236, 596, 947
Ama87I CYCGRG 1 cut(s) 239
AoxI GGCC 2 cut(s) 553, 879
ApeKI GCWGC 2 cut(s) 920, 923
Asp700I GAANNNNTTC 1 cut(s) 213
AspS9I GGNCC 1 cut(s) 464
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 5 cut(s) 62, 130, 623, 674, 688
AvaI CYCGRG 1 cut(s) 239
AvaII GGWCC 1 cut(s) 464
BanII GRGCYC 1 cut(s) 538
BbvI GCAGC 2 cut(s) 910, 932
BccI CCATC 2 cut(s) 294, 602
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 1 cut(s) 768
BcoDI GTCTC 4 cut(s) 54, 236, 596, 947
BfaI CTAG 2 cut(s) 380, 416
BglII AGATCT 1 cut(s) 783
BisI GCNGC 2 cut(s) 921, 924
BlpI GCTNAGC 1 cut(s) 485
BlsI GCNGC 2 cut(s) 922, 925
Bme1390I CCNGG 1 cut(s) 768
Bme18I GGWCC 1 cut(s) 464
BmeRI GACNNNNNGTC 1 cut(s) 462
BmeT110I CYCGRG 1 cut(s) 239
BmgT120I GGNCC 1 cut(s) 464
BmiI GGNNCC 2 cut(s) 465, 888
BmrFI CCNGG 1 cut(s) 768
BmrI ACTGGG 1 cut(s) 109
BmsI GCATC 3 cut(s) 76, 535, 766
BmuI ACTGGG 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 530
Bpu1102I GCTNAGC 1 cut(s) 485
BpuEI CTTGAG 4 cut(s) 392, 620, 692, 854
BpuMI CCSGG 1 cut(s) 768
BsaBI GATNNNNATC 2 cut(s) 746, 933
BsaI GGTCTC 3 cut(s) 54, 236, 596
BsaJI CCNNGG 6 cut(s) 69, 124, 658, 766, 882, 890
BsaWI WCCGGW 1 cut(s) 937
BsaXI ACNNNNNCTCC 4 cut(s) 416, 446, 878, 908
Bsc4I CCNNNNNNNGG 2 cut(s) 70, 673
Bse1I ACTGG 2 cut(s) 23, 104
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 2 cut(s) 746, 933
BseDI CCNNGG 6 cut(s) 69, 124, 658, 766, 882, 890
BseGI GGATG 3 cut(s) 168, 315, 747
BseJI GATNNNNATC 2 cut(s) 746, 933
BseLI CCNNNNNNNGG 2 cut(s) 70, 673
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 23, 104
BseRI GAGGAG 1 cut(s) 621
BseXI GCAGC 2 cut(s) 910, 932
Bsh1236I CGCG 1 cut(s) 752
BshFI GGCC 2 cut(s) 555, 881
BsiHKCI CYCGRG 1 cut(s) 239
BsiSI CCGG 4 cut(s) 768, 791, 864, 938
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 2 cut(s) 70, 673
BsmAI GTCTC 4 cut(s) 54, 236, 596, 947
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 2 cut(s) 555, 881
Bso31I GGTCTC 3 cut(s) 54, 236, 596
BsoBI CYCGRG 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 4 cut(s) 78, 139, 519, 783
Bsp1720I GCTNAGC 1 cut(s) 485
Bsp19I CCATGG 2 cut(s) 69, 124
BspACI CCGC 1 cut(s) 926
BspANI GGCC 2 cut(s) 555, 881
BspCNI CTCAG 1 cut(s) 772
BspFNI CGCG 1 cut(s) 752
BspLI GGNNCC 2 cut(s) 465, 888
BspQI GCTCTTC 1 cut(s) 381
BspTNI GGTCTC 3 cut(s) 54, 236, 596
BsrDI GCAATG 1 cut(s) 354
BsrI ACTGG 2 cut(s) 23, 104
BssECI CCNNGG 6 cut(s) 69, 124, 658, 766, 882, 890
BssMI GATC 4 cut(s) 78, 139, 519, 783
BssT1I CCWWGG 4 cut(s) 69, 124, 658, 882
Bst4CI ACNGT 2 cut(s) 713, 894
Bst6I CTCTTC 3 cut(s) 48, 359, 381
BstDEI CTNAG 4 cut(s) 39, 485, 530, 780
BstDSI CCRYGG 3 cut(s) 69, 124, 890
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 3 cut(s) 168, 315, 747
BstFNI CGCG 1 cut(s) 752
BstKTI GATC 4 cut(s) 81, 142, 522, 786
BstMAI GTCTC 4 cut(s) 54, 236, 596, 947
BstMBI GATC 4 cut(s) 78, 139, 519, 783
BstMWI GCNNNNNNNGC 1 cut(s) 920
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 1 cut(s) 766
BstUI CGCG 1 cut(s) 752
BstV1I GCAGC 2 cut(s) 910, 932
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 2 cut(s) 555, 881
BtgI CCRYGG 3 cut(s) 69, 124, 890
BtgZI GCGATG 2 cut(s) 789, 917
BtsCI GGATG 3 cut(s) 168, 315, 747
BtsIMutI CAGTG 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 464
CseI GACGC 1 cut(s) 741
Csp6I GTAC 2 cut(s) 433, 694
CviAII CATG 5 cut(s) 70, 125, 452, 501, 850
CviQI GTAC 2 cut(s) 433, 694
DdeI CTNAG 4 cut(s) 39, 485, 530, 780
DpnI GATC 4 cut(s) 80, 141, 521, 785
DpnII GATC 4 cut(s) 78, 139, 519, 783
DraIII CACNNNGTG 1 cut(s) 715
DriI GACNNNNNGTC 1 cut(s) 462
Eam1104I CTCTTC 3 cut(s) 48, 359, 381
Eam1105I GACNNNNNGTC 1 cut(s) 462
EarI CTCTTC 3 cut(s) 48, 359, 381
Eco130I CCWWGG 4 cut(s) 69, 124, 658, 882
Eco147I AGGCCT 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 3 cut(s) 54, 236, 596
Eco47I GGWCC 1 cut(s) 464
Eco57I CTGAAG 2 cut(s) 405, 936
Eco88I CYCGRG 1 cut(s) 239
Eco91I GGTNACC 1 cut(s) 662
EcoO65I GGTNACC 1 cut(s) 662
EcoT14I CCWWGG 4 cut(s) 69, 124, 658, 882
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 4 cut(s) 69, 124, 658, 882
FaeI CATG 5 cut(s) 73, 128, 455, 504, 853
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 69, 124, 451, 500, 849
FauNDI CATATG 2 cut(s) 136, 189
FbaI TGATCA 1 cut(s) 519
Fnu4HI GCNGC 2 cut(s) 921, 924
FokI GGATG 3 cut(s) 175, 302, 754
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 2 cut(s) 921, 924
FspBI CTAG 2 cut(s) 380, 416
GluI GCNGC 2 cut(s) 921, 924
GsuI CTGGAG 1 cut(s) 578
HaeIII GGCC 2 cut(s) 555, 881
HapII CCGG 4 cut(s) 768, 791, 864, 938
HgaI GACGC 1 cut(s) 741
Hin1II CATG 5 cut(s) 73, 128, 455, 504, 853
HindIII AAGCTT 2 cut(s) 482, 829
HinfI GANTC 5 cut(s) 376, 412, 815, 867, 934
HpaII CCGG 4 cut(s) 768, 791, 864, 938
HphI GGTGA 5 cut(s) 62, 130, 623, 674, 688
Hpy166II GTNNAC 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 241, 572
Hpy8I GTNNAC 1 cut(s) 121
Hpy99I CGWCG 2 cut(s) 86, 757
HpyAV CCTTC 3 cut(s) 346, 436, 725
HpyCH4III ACNGT 2 cut(s) 713, 894
HpyCH4V TGCA 2 cut(s) 548, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 920
HpyF3I CTNAG 4 cut(s) 39, 485, 530, 780
Hsp92II CATG 5 cut(s) 73, 128, 455, 504, 853
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 4 cut(s) 78, 139, 519, 783
LguI GCTCTTC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 2 cut(s) 910, 932
LweI GCATC 3 cut(s) 76, 535, 766
MaeI CTAG 2 cut(s) 380, 416
MaeIII GTNAC 1 cut(s) 662
MalI GATC 4 cut(s) 80, 141, 521, 785
MboI GATC 4 cut(s) 78, 139, 519, 783
MboII GAAGA 6 cut(s) 65, 100, 266, 376, 398, 451
MflI RGATCY 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 538
MlyI GAGTC 2 cut(s) 809, 861
MmeI TCCRAC 2 cut(s) 402, 491
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 15, 603
MslI CAYNNNNRTG 1 cut(s) 543
MspA1I CMGCKG 1 cut(s) 923
MspI CCGG 4 cut(s) 768, 791, 864, 938
MspR9I CCNGG 1 cut(s) 768
Mva1269I GAATGC 1 cut(s) 640
MvnI CGCG 1 cut(s) 752
MwoI GCNNNNNNNGC 1 cut(s) 920
NciI CCSGG 1 cut(s) 768
NcoI CCATGG 2 cut(s) 69, 124
NdeI CATATG 2 cut(s) 136, 189
NdeII GATC 4 cut(s) 78, 139, 519, 783
NlaIII CATG 5 cut(s) 73, 128, 455, 504, 853
NlaIV GGNNCC 2 cut(s) 465, 888
NmuCI GTSAC 1 cut(s) 662
PaeR7I CTCGAG 1 cut(s) 239
PceI AGGCCT 1 cut(s) 555
PciSI GCTCTTC 1 cut(s) 381
PctI GAATGC 1 cut(s) 640
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 376, 412, 934
PflMI CCANNNNNTGG 1 cut(s) 70
PkrI GCNGC 2 cut(s) 922, 925
PleI GAGTC 2 cut(s) 809, 861
PpsI GAGTC 2 cut(s) 809, 861
PspEI GGTNACC 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 465, 888
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 783
PvuII CAGCTG 1 cut(s) 923
RsaI GTAC 2 cut(s) 434, 695
RsaNI GTAC 2 cut(s) 433, 694
RseI CAYNNNNRTG 1 cut(s) 543
SapI GCTCTTC 1 cut(s) 381
SaqAI TTAA 2 cut(s) 15, 603
SatI GCNGC 2 cut(s) 921, 924
Sau3AI GATC 4 cut(s) 78, 139, 519, 783
Sau96I GGNCC 1 cut(s) 464
SchI GAGTC 2 cut(s) 809, 861
ScrFI CCNGG 1 cut(s) 768
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 3 cut(s) 76, 535, 766
Sfr274I CTCGAG 1 cut(s) 239
SinI GGWCC 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 5 cut(s) 239, 371, 635, 671, 869
SmoI CTYRAG 5 cut(s) 239, 371, 635, 671, 869
SseBI AGGCCT 1 cut(s) 555
SsiI CCGC 1 cut(s) 926
SspMI CTAG 2 cut(s) 380, 416
StuI AGGCCT 1 cut(s) 555
StyD4I CCNGG 1 cut(s) 766
StyI CCWWGG 4 cut(s) 69, 124, 658, 882
TaaI ACNGT 2 cut(s) 713, 894
TaqI TCGA 5 cut(s) 81, 111, 240, 261, 897
TaqII GACCGA 1 cut(s) 260
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 3 cut(s) 376, 412, 934
Tru1I TTAA 2 cut(s) 15, 603
Tru9I TTAA 2 cut(s) 15, 603
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 1 cut(s) 662
TseI GCWGC 2 cut(s) 920, 923
Tsp45I GTSAC 1 cut(s) 662
TspDTI ATGAA 6 cut(s) 23, 348, 365, 440, 866, 920
TspRI CASTG 1 cut(s) 592
Van91I CCANNNNNTGG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 464
XhoI CTCGAG 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 2 cut(s) 380, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.