FvH4_3g01280

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0013988
Physical Location & Seq
Reverse (-)
617180 .. 619824
2645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01280.t1

Sequence Viewer

Length: 939 bp
ATGGAGAACTTCCCGGTTGTTAACATGGAGCAACTCAACGGTGAAAAGAGAGCGGCAACTATGGAGAAGATAAACGATGCTTGTGAGAACTGGGGTTTCTTTGAGTTGATGAACCATGGGATATCCCATGAGTTGATGGACAAGGTGGAGAAGCTCACAAAGGAGCACTACAGAAAGTGCATGGAGCAAAGGTTCAAGGAAATGGTGGCAAGCAAAGGTCTCGAAGCTGTCAACTCTGAAATCGAAGATTTGGACTGGGAAAGCACCTTCTTCTTGCGCCATCTCCCCTTCTCCAACATTTCCCAAGTCCCCGATCTCGACGAAGATTACAGGGAGGCCATGAAGGAATTTGCAGTGGAACTAGAGAAGCTGGCTGAGCAACTACTGGACTTGTTGTGTGAGAATCTGGGGCTGGAGAAGGGTTACCTGAAGAAGGCTTTCTATGGATCCAAGGGACCAAATTTTGGTACCAAGGTGAGCAACTACCCTCCATGCCCCAAACCGGACCTGGTCAAGGGACTCCGGGCCCACACCGATGCCGGAGGCGTCATCCTGCTGTTCCAAGATGATAAGGTCAGCGGCCTCCAGCTGCTCAAGGATGGGCAATGGATTGATGTACCTCCAATGCACCACTCCATTGTCATCAACTTAGGTGACCAACTTGAGGTGATCACTAACGGCAAGTACAAGAGTGTGATGCACCGTGTGTTAGTGCAACCTGATGGAAACAGAATGTCCATAGCCTCATTCTACAACCCCGGCGACGATGCTGTTATCTGTCCAGCACCGGCAATGCTTGAAAAACAAACCGAGGAATGCCCAACTTATCCAAAATTCGTGTTTGATGACTACATGAAGCTCTATGCAGGCCTCAAATTTCAAGCCAAGGAGCCAAGGTTTGAAGCCATGAAGGCCATGGAATCCATTGCGATTGTTTGA

Protein Analysis

313

Amino Acids

35.56

Weight (kDa)

5.11

Isoelectric Point (pI)

38.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 5 - 95 2.5e-15 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 159 - 253 4.8e-34 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12010 AT1G62380
fragaria_vesca FvH4_3g01280
malus_domestica MD05G1354000.v1.1 MD10G1328100.v1.1
prunus_persica Prupe.4G013800_v2.0.a1
pyrus_communis pycom05g32140 pycom10g27800 pycom17g07320
rosa_chinensis RchiOBHm_Chr5g0001831
rosa_laevigata RLG00000030975
rosa_multiflora Rmu_ssc0000237.1_g000010
rosa_roxburghii Rroxscaffold_1G00071260 Rroxscaffold_1G00074520
rosa_rugosa Rorug04G0393500
rosa_samantha Rh5DG016100
rosa_wichuraiana Rw5G001410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 467
AccB1I GGYRCC 1 cut(s) 467
AccB7I CCANNNNNTGG 1 cut(s) 464
AccBSI CCGCTC 1 cut(s) 53
AciI CCGC 2 cut(s) 53, 579
AclWI GGATC 2 cut(s) 441, 454
AcsI RAATTY 4 cut(s) 347, 460, 833, 875
AcuI CTGAAG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 546
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 3 cut(s) 469, 618, 686
AfiI CCNNNNNNNGG 5 cut(s) 433, 464, 502, 514, 664
AgsI TTSAA 4 cut(s) 196, 800, 881, 902
AjnI CCWGG 1 cut(s) 507
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 5 cut(s) 154, 227, 370, 589, 859
AluI AGCT 5 cut(s) 154, 227, 370, 589, 859
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 441, 454
AoxI GGCC 5 cut(s) 336, 525, 580, 868, 912
ApaI GGGCCC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 589
ApoI RAATTY 4 cut(s) 347, 460, 833, 875
Asp700I GAANNNNTTC 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 467
AspLEI GCGC 1 cut(s) 279
AspS9I GGNCC 4 cut(s) 455, 505, 525, 526
AsuC2I CCSGG 3 cut(s) 14, 524, 759
AsuHPI GGTGA 4 cut(s) 53, 487, 665, 679
AvaII GGWCC 2 cut(s) 455, 505
BaeGI GKGCMC 1 cut(s) 529
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BamHI GGATCC 1 cut(s) 446
BanI GGYRCC 1 cut(s) 467
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 576
BccI CCATC 4 cut(s) 130, 288, 593, 716
BceAI ACGGC 1 cut(s) 694
BcgI CGANNNNNNTGC 2 cut(s) 202, 236
BciT130I CCWGG 1 cut(s) 509
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 3 cut(s) 14, 524, 759
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 362
BfmI CTRYAG 1 cut(s) 169
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 3 cut(s) 54, 580, 590
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 3 cut(s) 55, 581, 591
Bme1390I CCNGG 4 cut(s) 14, 509, 524, 759
Bme18I GGWCC 2 cut(s) 455, 505
BmgT120I GGNCC 4 cut(s) 455, 505, 525, 526
BmiI GGNNCC 5 cut(s) 448, 456, 469, 527, 891
BmrFI CCNGG 4 cut(s) 14, 509, 524, 759
BmrI ACTGGG 2 cut(s) 100, 265
BmsI GCATC 4 cut(s) 67, 526, 687, 757
BmuI ACTGGG 2 cut(s) 100, 265
BpmI CTGGAG 2 cut(s) 434, 569
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 578, 683
BpuMI CCSGG 3 cut(s) 14, 524, 759
BsaHI GRCGYC 1 cut(s) 546
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 8 cut(s) 115, 450, 471, 757, 810, 885, 893, 915
BsaWI WCCGGW 1 cut(s) 502
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 881, 911
Bsc4I CCNNNNNNNGG 5 cut(s) 433, 464, 502, 514, 664
Bse118I RCCGGY 1 cut(s) 787
Bse1I ACTGG 3 cut(s) 95, 260, 390
Bse3DI GCAATG 3 cut(s) 611, 798, 924
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 8 cut(s) 115, 450, 471, 757, 810, 885, 893, 915
BseGI GGATG 2 cut(s) 549, 604
BseLI CCNNNNNNNGG 5 cut(s) 433, 464, 502, 514, 664
BseMI GCAATG 3 cut(s) 611, 798, 924
BseMII CTCAG 1 cut(s) 366
BseNI ACTGG 3 cut(s) 95, 260, 390
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 1 cut(s) 576
BshFI GGCC 5 cut(s) 338, 527, 582, 870, 914
BshNI GGYRCC 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 6 cut(s) 14, 503, 523, 540, 759, 788
BslFI GGGAC 3 cut(s) 293, 468, 531
BslI CCNNNNNNNGG 5 cut(s) 433, 464, 502, 514, 664
BsmAI GTCTC 1 cut(s) 224
BsmFI GGGAC 3 cut(s) 293, 468, 531
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 5 cut(s) 338, 527, 582, 870, 914
Bso31I GGTCTC 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 168, 529
Bsp143I GATC 3 cut(s) 313, 446, 669
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 2 cut(s) 115, 915
BspACI CCGC 2 cut(s) 53, 579
BspANI GGCC 5 cut(s) 338, 527, 582, 870, 914
BspCNI CTCAG 1 cut(s) 367
BspLI GGNNCC 5 cut(s) 448, 456, 469, 527, 891
BspPI GGATC 2 cut(s) 441, 454
BspT107I GGYRCC 1 cut(s) 467
BspTNI GGTCTC 1 cut(s) 224
BsrBI CCGCTC 1 cut(s) 53
BsrDI GCAATG 3 cut(s) 611, 798, 924
BsrFI RCCGGY 1 cut(s) 787
BsrI ACTGG 3 cut(s) 95, 260, 390
BssAI RCCGGY 1 cut(s) 787
BssECI CCNNGG 8 cut(s) 115, 450, 471, 757, 810, 885, 893, 915
BssMI GATC 3 cut(s) 313, 446, 669
BssNI GRCGYC 1 cut(s) 546
BssT1I CCWWGG 6 cut(s) 115, 450, 471, 885, 893, 915
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 41, 704
BstACI GRCGYC 1 cut(s) 546
BstC8I GCNNGC 3 cut(s) 211, 372, 868
BstDEI CTNAG 2 cut(s) 375, 649
BstDSI CCRYGG 2 cut(s) 115, 915
BstEII GGTNACC 2 cut(s) 422, 653
BstENI CCTNNNNNAGG 2 cut(s) 431, 512
BstF5I GGATG 2 cut(s) 549, 604
BstHHI GCGC 1 cut(s) 279
BstKTI GATC 3 cut(s) 316, 449, 672
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 313, 446, 669
BstMWI GCNNNNNNNGC 2 cut(s) 376, 911
BstNI CCWGG 1 cut(s) 509
BstPI GGTNACC 2 cut(s) 422, 653
BstSCI CCNGG 4 cut(s) 12, 507, 522, 757
BstSFI CTRYAG 1 cut(s) 169
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 576
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BsuRI GGCC 5 cut(s) 338, 527, 582, 870, 914
BtgI CCRYGG 2 cut(s) 115, 915
BtsCI GGATG 2 cut(s) 549, 604
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
Cac8I GCNNGC 3 cut(s) 211, 372, 868
CfoI GCGC 1 cut(s) 279
Cfr10I RCCGGY 1 cut(s) 787
Cfr13I GGNCC 4 cut(s) 455, 505, 525, 526
CseI GACGC 1 cut(s) 535
CsiI ACCWGGT 1 cut(s) 507
Csp6I GTAC 3 cut(s) 468, 617, 685
CviAII CATG 9 cut(s) 25, 116, 128, 181, 340, 492, 853, 907, 916
CviQI GTAC 3 cut(s) 468, 617, 685
DdeI CTNAG 2 cut(s) 375, 649
DpnI GATC 3 cut(s) 315, 448, 671
DpnII GATC 3 cut(s) 313, 446, 669
DraIII CACNNNGTG 1 cut(s) 706
Eco130I CCWWGG 6 cut(s) 115, 450, 471, 885, 893, 915
Eco147I AGGCCT 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 529
Eco31I GGTCTC 1 cut(s) 224
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 455, 505
Eco57I CTGAAG 1 cut(s) 449
Eco91I GGTNACC 2 cut(s) 422, 653
EcoNI CCTNNNNNAGG 2 cut(s) 431, 512
EcoO65I GGTNACC 2 cut(s) 422, 653
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 6 cut(s) 115, 450, 471, 885, 893, 915
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 6 cut(s) 115, 450, 471, 885, 893, 915
FaeI CATG 9 cut(s) 28, 119, 131, 184, 343, 495, 856, 910, 919
FaqI GGGAC 3 cut(s) 293, 468, 531
FatI CATG 9 cut(s) 24, 115, 127, 180, 339, 491, 852, 906, 915
FbaI TGATCA 1 cut(s) 669
Fnu4HI GCNGC 3 cut(s) 54, 580, 590
FokI GGATG 2 cut(s) 536, 611
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 3 cut(s) 54, 580, 590
FspBI CTAG 1 cut(s) 362
GlaI GCGC 1 cut(s) 278
GluI GCNGC 3 cut(s) 54, 580, 590
GsuI CTGGAG 2 cut(s) 434, 569
HaeIII GGCC 5 cut(s) 338, 527, 582, 870, 914
HapII CCGG 6 cut(s) 14, 503, 523, 540, 759, 788
HgaI GACGC 1 cut(s) 535
HhaI GCGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 546
Hin1II CATG 9 cut(s) 28, 119, 131, 184, 343, 495, 856, 910, 919
Hin6I GCGC 1 cut(s) 277
HinP1I GCGC 1 cut(s) 277
HincII GTYRAC 2 cut(s) 22, 232
HindII GTYRAC 2 cut(s) 22, 232
HinfI GANTC 3 cut(s) 403, 519, 920
HpaI GTTAAC 1 cut(s) 22
HpaII CCGG 6 cut(s) 14, 503, 523, 540, 759, 788
HphI GGTGA 4 cut(s) 53, 487, 665, 679
Hpy166II GTNNAC 2 cut(s) 22, 232
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 221, 317
Hpy8I GTNNAC 2 cut(s) 22, 232
Hpy99I CGWCG 2 cut(s) 323, 767
HpyAV CCTTC 6 cut(s) 277, 298, 337, 412, 427, 904
HpyCH4III ACNGT 2 cut(s) 41, 704
HpyCH4V TGCA 6 cut(s) 180, 353, 628, 700, 715, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 376, 911
HpyF3I CTNAG 2 cut(s) 375, 649
Hsp92I GRCGYC 1 cut(s) 546
Hsp92II CATG 9 cut(s) 28, 119, 131, 184, 343, 495, 856, 910, 919
HspAI GCGC 1 cut(s) 277
KpnI GGTACC 1 cut(s) 471
Ksp22I TGATCA 1 cut(s) 669
KspAI GTTAAC 1 cut(s) 22
Kzo9I GATC 3 cut(s) 313, 446, 669
LmnI GCTCC 4 cut(s) 28, 163, 184, 889
Lsp1109I GCAGC 1 cut(s) 576
LweI GCATC 4 cut(s) 67, 526, 687, 757
MabI ACCWGGT 1 cut(s) 507
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 422, 653
MalI GATC 3 cut(s) 315, 448, 671
MbiI CCGCTC 1 cut(s) 53
MboI GATC 3 cut(s) 313, 446, 669
MboII GAAGA 5 cut(s) 79, 257, 262, 335, 442
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 2 cut(s) 168, 529
MluCI AATT 4 cut(s) 347, 460, 833, 875
MlyI GAGTC 1 cut(s) 513
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 9 cut(s) 328, 498, 536, 593, 630, 658, 754, 805, 881
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 2 cut(s) 579, 589
MspI CCGG 6 cut(s) 14, 503, 523, 540, 759, 788
MspR9I CCNGG 4 cut(s) 14, 509, 524, 759
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 376, 911
NciI CCSGG 3 cut(s) 14, 524, 759
NcoI CCATGG 2 cut(s) 115, 915
NdeII GATC 3 cut(s) 313, 446, 669
NlaIII CATG 9 cut(s) 28, 119, 131, 184, 343, 495, 856, 910, 919
NlaIV GGNNCC 5 cut(s) 448, 456, 469, 527, 891
NmuCI GTSAC 1 cut(s) 653
PceI AGGCCT 1 cut(s) 870
PctI GAATGC 1 cut(s) 821
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 403, 920
PflFI GACNNNGTC 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 464
PkrI GCNGC 3 cut(s) 55, 581, 591
PleI GAGTC 1 cut(s) 513
PpsI GAGTC 1 cut(s) 513
Psp6I CCWGG 1 cut(s) 507
PspEI GGTNACC 2 cut(s) 422, 653
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 5 cut(s) 448, 456, 469, 527, 891
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 4 cut(s) 455, 505, 525, 526
PsuI RGATCY 1 cut(s) 446
PsyI GACNNNGTC 1 cut(s) 509
PvuII CAGCTG 1 cut(s) 589
RsaI GTAC 3 cut(s) 469, 618, 686
RsaNI GTAC 3 cut(s) 468, 617, 685
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 3 cut(s) 54, 580, 590
Sau3AI GATC 3 cut(s) 313, 446, 669
Sau96I GGNCC 4 cut(s) 455, 505, 525, 526
SchI GAGTC 1 cut(s) 513
ScrFI CCNGG 4 cut(s) 14, 509, 524, 759
SduI GDGCHC 2 cut(s) 168, 529
SexAI ACCWGGT 1 cut(s) 507
SfaNI GCATC 4 cut(s) 67, 526, 687, 757
SfcI CTRYAG 1 cut(s) 169
SinI GGWCC 2 cut(s) 455, 505
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 593, 662
SmoI CTYRAG 2 cut(s) 593, 662
Sse9I AATT 4 cut(s) 347, 460, 833, 875
SseBI AGGCCT 1 cut(s) 870
SsiI CCGC 2 cut(s) 53, 579
SspMI CTAG 1 cut(s) 362
StuI AGGCCT 1 cut(s) 870
StyD4I CCNGG 4 cut(s) 12, 507, 522, 757
StyI CCWWGG 6 cut(s) 115, 450, 471, 885, 893, 915
TaaI ACNGT 2 cut(s) 41, 704
TaqI TCGA 3 cut(s) 222, 243, 318
TasI AATT 4 cut(s) 347, 460, 833, 875
TatI WGTACW 1 cut(s) 684
TauI GCSGC 2 cut(s) 56, 582
TfiI GAWTC 2 cut(s) 403, 920
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 360
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 1 cut(s) 589
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 4 cut(s) 125, 356, 869, 923
TspRI CASTG 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 509
Van91I CCANNNNNTGG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 455, 505
XagI CCTNNNNNAGG 2 cut(s) 431, 512
XapI RAATTY 4 cut(s) 347, 460, 833, 875
XcmI CCANNNNNNNNNTGG 2 cut(s) 505, 913
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.