Prupe.4G013800_v2.0.a1

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0013988
Physical Location & Seq
Reverse (-)
642533 .. 644360
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G013800.1

Sequence Viewer

Length: 957 bp
ATGGAGACTTTCCCAGTTGTTGACTTGAGCCAAATTAATGGTGAAAAGAGAGAAGCTACCATGGAGAAGATGAATGATGCTTGTGAGAATTGGGGTTTCTTTGAGTTGGTGAACCATGGGATATCTCATGAGCTGATGGATACTGTGGAGAAGCTGACAAAGGAGCACTACAAAAAGTGCATGGAGCAAAGGTTTAAGGAAATGGTCGCAAGCAAAGGCCTTGAAGCTGTCCAGTCTGAAATCCATGACTTGGACTGGGAAAGCACCTTCTTCTTGCGCCACCTTCCTGTCTCTAACATATCCCAAATCCCTGACCTTGATGAAGATTACAGGAAGGTCATGAAAGAATTTGCAGTGGAATTAGAGAAACTAGCTGAGCAACTTCTGGACTTGCTGTGTGAGAATCTTGGGTTGGAGAAGGGTTATCTGAAGAAGGCTTTCTATGGATCAAAGGGACCAAACTTCGGGACAAAGGTCAGCAACTATCCTCCTTGCCCCAAACCAGACCTGATCAAGGGCCTCCGGGCCCACACCGATGCAGGTGGCATCATCCTACTCTTCCAAGATGACAAGGTCAGCGGCCTCCAGCTCCTCAAGGATGGTCAATGGATTGATGTTCCTCCAATGCACCACTCCATTGTCATCAACTTAGGTGATCAACTTGAGGTGATCACTAATGGGAAATACAAGAGTGTGATGCACCGTGTGATAGCGCAGCCGGATGGTACCAGAATGTCCATAGCCTCATTCTACAACCCAGGTGATGATGCTTTTATCTGCCCAGCACCAGCATTGCTGGAAAAAGAAACTGAGAATATCTCAGCCTACCCCAAATTTGTGTTTGATGATTACATGAAGCTCTATTCTGGCCTCAAATTCCATGCCAAGGAACCAAGATTTGAAGCCATGAAGGCCATGGAATCCACCGTTAATTTGGACCCTGTTGCAACTGTCTGA

Protein Analysis

319

Amino Acids

36.1

Weight (kDa)

5.22

Isoelectric Point (pI)

36.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12010 AT1G62380
fragaria_vesca FvH4_3g01280
malus_domestica MD05G1354000.v1.1 MD10G1328100.v1.1
prunus_persica Prupe.4G013800_v2.0.a1
pyrus_communis pycom05g32140 pycom10g27800 pycom17g07320
rosa_chinensis RchiOBHm_Chr5g0001831
rosa_laevigata RLG00000030975
rosa_multiflora Rmu_ssc0000237.1_g000010
rosa_roxburghii Rroxscaffold_1G00071260 Rroxscaffold_1G00074520
rosa_rugosa Rorug04G0393500
rosa_samantha Rh5DG016100
rosa_wichuraiana Rw5G001410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 530
Acc36I ACCTGC 1 cut(s) 530
Acc65I GGTACC 1 cut(s) 725
AccB1I GGYRCC 1 cut(s) 725
AccB7I CCANNNNNTGG 1 cut(s) 250
AciI CCGC 1 cut(s) 579
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 3 cut(s) 347, 833, 875
AcuI CTGAAG 1 cut(s) 449
AdeI CACNNNGTG 1 cut(s) 706
AfaI GTAC 1 cut(s) 727
AfiI CCNNNNNNNGG 4 cut(s) 250, 464, 514, 886
AgsI TTSAA 2 cut(s) 224, 902
AjnI CCWGG 1 cut(s) 757
AjuI GAANNNNNNNTTGG 2 cut(s) 395, 427
AluBI AGCT 7 cut(s) 56, 133, 154, 227, 374, 589, 859
AluI AGCT 7 cut(s) 56, 133, 154, 227, 374, 589, 859
Alw21I GWGCWC 1 cut(s) 168
Alw26I GTCTC 1 cut(s) 295
AlwI GGATC 1 cut(s) 454
AoxI GGCC 6 cut(s) 217, 517, 525, 580, 868, 912
ApaI GGGCCC 1 cut(s) 529
ApeKI GCWGC 1 cut(s) 715
ApoI RAATTY 3 cut(s) 347, 833, 875
AseI ATTAAT 1 cut(s) 36
Asp700I GAANNNNTTC 1 cut(s) 437
Asp718I GGTACC 1 cut(s) 725
AspLEI GCGC 2 cut(s) 279, 715
AspS9I GGNCC 5 cut(s) 455, 517, 525, 526, 937
AsuC2I CCSGG 1 cut(s) 524
AsuHPI GGTGA 5 cut(s) 53, 121, 665, 679, 773
AvaII GGWCC 2 cut(s) 455, 937
BaeGI GKGCMC 1 cut(s) 529
BanI GGYRCC 1 cut(s) 725
BanII GRGCYC 1 cut(s) 529
Bbv12I GWGCWC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 727
BccI CCATC 3 cut(s) 130, 593, 716
BciT130I CCWGG 1 cut(s) 759
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 3 cut(s) 510, 655, 669
BcnI CCSGG 1 cut(s) 524
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 1 cut(s) 371
BfuAI ACCTGC 1 cut(s) 530
BfuI GTATCC 1 cut(s) 133
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 2 cut(s) 580, 716
BlpI GCTNAGC 1 cut(s) 375
BlsI GCNGC 2 cut(s) 581, 717
Bme1390I CCNGG 2 cut(s) 524, 759
Bme18I GGWCC 2 cut(s) 455, 937
BmgT120I GGNCC 5 cut(s) 455, 517, 525, 526, 937
BmiI GGNNCC 5 cut(s) 456, 527, 727, 891, 939
BmrFI CCNGG 2 cut(s) 524, 759
BmrI ACTGGG 2 cut(s) 8, 265
BmsI GCATC 5 cut(s) 67, 526, 555, 687, 757
BmuI ACTGGG 2 cut(s) 8, 265
BoxI GACNNNNGTC 1 cut(s) 473
BplI GAGNNNNNCTC 2 cut(s) 803, 835
BpmI CTGGAG 1 cut(s) 569
Bpu1102I GCTNAGC 1 cut(s) 375
BpuEI CTTGAG 3 cut(s) 46, 578, 683
BpuMI CCSGG 1 cut(s) 524
BsaJI CCNNGG 5 cut(s) 60, 115, 757, 885, 915
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 464, 514, 886
Bse1I ACTGG 3 cut(s) 14, 232, 260
Bse3DI GCAATG 1 cut(s) 791
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 5 cut(s) 60, 115, 757, 885, 915
BseGI GGATG 3 cut(s) 549, 604, 727
BseLI CCNNNNNNNGG 4 cut(s) 250, 464, 514, 886
BseMI GCAATG 1 cut(s) 791
BseMII CTCAG 3 cut(s) 366, 801, 834
BseNI ACTGG 3 cut(s) 14, 232, 260
BseRI GAGGAG 1 cut(s) 581
BseSI GKGCMC 1 cut(s) 529
BseXI GCAGC 1 cut(s) 727
BseYI CCCAGC 1 cut(s) 781
BshFI GGCC 6 cut(s) 219, 519, 527, 582, 870, 914
BshNI GGYRCC 1 cut(s) 725
BsiHKAI GWGCWC 1 cut(s) 168
BsiSI CCGG 2 cut(s) 523, 719
BslFI GGGAC 2 cut(s) 468, 481
BslI CCNNNNNNNGG 4 cut(s) 250, 464, 514, 886
BsmAI GTCTC 1 cut(s) 295
BsmFI GGGAC 2 cut(s) 468, 481
BsnI GGCC 6 cut(s) 219, 519, 527, 582, 870, 914
Bsp120I GGGCCC 1 cut(s) 525
Bsp1286I GDGCHC 2 cut(s) 168, 529
Bsp143I GATC 4 cut(s) 446, 510, 655, 669
Bsp1720I GCTNAGC 1 cut(s) 375
Bsp19I CCATGG 3 cut(s) 60, 115, 915
BspACI CCGC 1 cut(s) 579
BspANI GGCC 6 cut(s) 219, 519, 527, 582, 870, 914
BspCNI CTCAG 3 cut(s) 367, 802, 833
BspHI TCATGA 2 cut(s) 127, 339
BspLI GGNNCC 5 cut(s) 456, 527, 727, 891, 939
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 1 cut(s) 454
BspT107I GGYRCC 1 cut(s) 725
BsrDI GCAATG 1 cut(s) 791
BsrI ACTGG 3 cut(s) 14, 232, 260
BssECI CCNNGG 5 cut(s) 60, 115, 757, 885, 915
BssMI GATC 4 cut(s) 446, 510, 655, 669
BssT1I CCWWGG 4 cut(s) 60, 115, 885, 915
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 4 cut(s) 145, 704, 928, 952
Bst6I CTCTTC 1 cut(s) 563
BstC8I GCNNGC 1 cut(s) 211
BstDEI CTNAG 4 cut(s) 375, 649, 810, 820
BstDSI CCRYGG 3 cut(s) 60, 115, 915
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 3 cut(s) 549, 604, 727
BstHHI GCGC 2 cut(s) 279, 715
BstKTI GATC 4 cut(s) 449, 513, 658, 672
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 4 cut(s) 446, 510, 655, 669
BstMWI GCNNNNNNNGC 1 cut(s) 911
BstNI CCWGG 1 cut(s) 759
BstPAI GACNNNNGTC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 522, 757
BstSLI GKGCMC 1 cut(s) 529
BstV1I GCAGC 1 cut(s) 727
BstXI CCANNNNNNTGG 1 cut(s) 38
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 6 cut(s) 219, 519, 527, 582, 870, 914
BtgI CCRYGG 3 cut(s) 60, 115, 915
BtsCI GGATG 3 cut(s) 549, 604, 727
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 360
BveI ACCTGC 1 cut(s) 530
Cac8I GCNNGC 1 cut(s) 211
CciI TCATGA 2 cut(s) 127, 339
CfoI GCGC 2 cut(s) 279, 715
Cfr13I GGNCC 5 cut(s) 455, 517, 525, 526, 937
Csp6I GTAC 1 cut(s) 726
CviQI GTAC 1 cut(s) 726
DdeI CTNAG 4 cut(s) 375, 649, 810, 820
DpnI GATC 4 cut(s) 448, 512, 657, 671
DpnII GATC 4 cut(s) 446, 510, 655, 669
DraIII CACNNNGTG 1 cut(s) 706
Eam1104I CTCTTC 1 cut(s) 563
EarI CTCTTC 1 cut(s) 563
Eco130I CCWWGG 4 cut(s) 60, 115, 885, 915
Eco147I AGGCCT 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 529
Eco32I GATATC 1 cut(s) 123
Eco47I GGWCC 2 cut(s) 455, 937
Eco57I CTGAAG 1 cut(s) 449
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 757
EcoRV GATATC 1 cut(s) 123
EcoT14I CCWWGG 4 cut(s) 60, 115, 885, 915
EcoT38I GRGCYC 1 cut(s) 529
ErhI CCWWGG 4 cut(s) 60, 115, 885, 915
FaqI GGGAC 2 cut(s) 468, 481
FbaI TGATCA 3 cut(s) 510, 655, 669
Fnu4HI GCNGC 2 cut(s) 580, 716
FokI GGATG 3 cut(s) 536, 611, 734
FriOI GRGCYC 1 cut(s) 529
Fsp4HI GCNGC 2 cut(s) 580, 716
FspBI CTAG 1 cut(s) 371
GlaI GCGC 2 cut(s) 278, 714
GluI GCNGC 2 cut(s) 580, 716
GsaI CCCAGC 1 cut(s) 785
GsuI CTGGAG 1 cut(s) 569
HaeIII GGCC 6 cut(s) 219, 519, 527, 582, 870, 914
HapII CCGG 2 cut(s) 523, 719
HhaI GCGC 2 cut(s) 279, 715
Hin6I GCGC 2 cut(s) 277, 713
HinP1I GCGC 2 cut(s) 277, 713
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 2 cut(s) 403, 920
HpaII CCGG 2 cut(s) 523, 719
HphI GGTGA 5 cut(s) 53, 121, 665, 679, 773
Hpy166II GTNNAC 2 cut(s) 22, 112
Hpy188I TCNGA 3 cut(s) 238, 429, 956
Hpy188III TCNNGA 4 cut(s) 128, 340, 386, 466
Hpy8I GTNNAC 2 cut(s) 22, 112
HpyAV CCTTC 6 cut(s) 277, 293, 328, 412, 427, 904
HpyCH4III ACNGT 4 cut(s) 145, 704, 928, 952
HpyCH4V TGCA 6 cut(s) 180, 353, 539, 628, 700, 947
HpyF10VI GCNNNNNNNGC 1 cut(s) 911
HpyF3I CTNAG 4 cut(s) 375, 649, 810, 820
HspAI GCGC 2 cut(s) 277, 713
KpnI GGTACC 1 cut(s) 729
Ksp22I TGATCA 3 cut(s) 510, 655, 669
Kzo9I GATC 4 cut(s) 446, 510, 655, 669
LmnI GCTCC 3 cut(s) 163, 184, 594
Lsp1109I GCAGC 1 cut(s) 727
LweI GCATC 5 cut(s) 67, 526, 555, 687, 757
MaeI CTAG 1 cut(s) 371
MalI GATC 4 cut(s) 448, 512, 657, 671
MboI GATC 4 cut(s) 446, 510, 655, 669
MboII GAAGA 5 cut(s) 79, 262, 335, 442, 550
MhlI GDGCHC 2 cut(s) 168, 529
MluCI AATT 7 cut(s) 33, 88, 347, 359, 833, 875, 931
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 8 cut(s) 498, 530, 593, 602, 630, 658, 754, 881
MroXI GAANNNNTTC 1 cut(s) 437
MseI TTAA 3 cut(s) 36, 195, 930
MslI CAYNNNNRTG 1 cut(s) 534
MspA1I CMGCKG 1 cut(s) 579
MspI CCGG 2 cut(s) 523, 719
MspR9I CCNGG 2 cut(s) 524, 759
MvaI CCWGG 1 cut(s) 759
MwoI GCNNNNNNNGC 1 cut(s) 911
NciI CCSGG 1 cut(s) 524
NcoI CCATGG 3 cut(s) 60, 115, 915
NdeII GATC 4 cut(s) 446, 510, 655, 669
NlaIV GGNNCC 5 cut(s) 456, 527, 727, 891, 939
PagI TCATGA 2 cut(s) 127, 339
PaqCI CACCTGC 1 cut(s) 530
PceI AGGCCT 1 cut(s) 219
PdmI GAANNNNTTC 1 cut(s) 437
PfeI GAWTC 2 cut(s) 403, 920
PflFI GACNNNGTC 1 cut(s) 572
PflMI CCANNNNNTGG 1 cut(s) 250
PkrI GCNGC 2 cut(s) 581, 717
PshAI GACNNNNGTC 1 cut(s) 473
PshBI ATTAAT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 757
PspFI CCCAGC 1 cut(s) 781
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 5 cut(s) 456, 527, 727, 891, 939
PspOMI GGGCCC 1 cut(s) 525
PspPI GGNCC 5 cut(s) 455, 517, 525, 526, 937
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 1 cut(s) 727
RsaNI GTAC 1 cut(s) 726
RseI CAYNNNNRTG 1 cut(s) 534
SaqAI TTAA 3 cut(s) 36, 195, 930
SatI GCNGC 2 cut(s) 580, 716
Sau3AI GATC 4 cut(s) 446, 510, 655, 669
Sau96I GGNCC 5 cut(s) 455, 517, 525, 526, 937
ScrFI CCNGG 2 cut(s) 524, 759
SduI GDGCHC 2 cut(s) 168, 529
SfaNI GCATC 5 cut(s) 67, 526, 555, 687, 757
SinI GGWCC 2 cut(s) 455, 937
SmiMI CAYNNNNRTG 1 cut(s) 534
SmlI CTYRAG 3 cut(s) 25, 593, 662
SmoI CTYRAG 3 cut(s) 25, 593, 662
Sse9I AATT 7 cut(s) 33, 88, 347, 359, 833, 875, 931
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 1 cut(s) 579
SspMI CTAG 1 cut(s) 371
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 522, 757
StyI CCWWGG 4 cut(s) 60, 115, 885, 915
TaaI ACNGT 4 cut(s) 145, 704, 928, 952
TasI AATT 7 cut(s) 33, 88, 347, 359, 833, 875, 931
TauI GCSGC 1 cut(s) 582
TfiI GAWTC 2 cut(s) 403, 920
Tru1I TTAA 3 cut(s) 36, 195, 930
Tru9I TTAA 3 cut(s) 36, 195, 930
TscAI CASTG 1 cut(s) 360
TseI GCWGC 1 cut(s) 715
TspDTI ATGAA 5 cut(s) 86, 336, 356, 869, 923
TspRI CASTG 1 cut(s) 360
Tth111I GACNNNGTC 1 cut(s) 572
Van91I CCANNNNNTGG 1 cut(s) 250
VpaK11BI GGWCC 2 cut(s) 455, 937
VspI ATTAAT 1 cut(s) 36
XagI CCTNNNNNAGG 1 cut(s) 512
XapI RAATTY 3 cut(s) 347, 833, 875
XcmI CCANNNNNNNNNTGG 2 cut(s) 913, 931
XmnI GAANNNNTTC 1 cut(s) 437
XspI CTAG 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.