AT1G62380

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
23082036 .. 23084253
2218 bp
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UTR
Exon/CDS
Intron
AT1G62380.1

Sequence Viewer

Length: 963 bp
ATGGAGAAGAACATGAAGTTTCCAGTAGTAGACTTGTCCAAGCTCAATGGGGAAGAGAGAGACCAAACCATGGCTCTAATCAATGAAGCTTGTGAGAATTGGGGCTTCTTTGAGATAGTGAACCATGGATTACCACATGACTTAATGGACAAGATCGAGAAGATGACAAAGGACCATTACAAGACATGCCAAGAACAAAAGTTCAATGACATGCTCAAGTCCAAAGGTTTGGATAATCTTGAGACAGAAGTCGAAGATGTCGATTGGGAAAGCACTTTCTACGTTCGTCACCTCCCTCAATCCAATCTCAATGACATTTCAGATGTGTCTGATGAATACAGGACGGCCATGAAAGACTTTGGTAAGAGACTGGAGAATCTTGCTGAGGATTTGTTGGATCTACTGTGTGAGAATCTAGGGTTAGAGAAAGGGTATTTGAAGAAAGTGTTTCATGGAACAAAAGGCCCAACCTTTGGGACAAAGGTGAGCAATTATCCACCATGTCCTAAACCAGAGATGATCAAAGGTCTTAGGGCCCACACTGATGCAGGAGGCATCATCTTGTTGTTTCAAGACGACAAGGTCAGTGGTCTCCAGCTTCTTAAAGATGGTGACTGGATTGATGTTCCTCCTCTCAACCACTCTATTGTCATCAATCTTGGTGACCAACTTGAGGTGATAACCAACGGGAAGTATAAGAGTGTGCTGCACCGTGTGGTGACTCAACAAGAAGGAAACAGGATGTCGGTTGCATCGTTTTACAACCCGGGAAGCGATGCGGAGATCTCACCAGCTACTTCGCTTGTCGAGAAAGATTCCGAGTACCCGAGTTTCGTCTTTGATGACTACATGAAGCTTTATGCAGGGGTCAAGTTTCAGCCCAAGGAGCCACGGTTCGCAGCAATGAAGAATGCTTCTGCAGTTACAGAACTGAATCCTACAGCAGCCGTAGAGACTTTCTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

320

Amino Acids

36.18

Weight (kDa)

4.98

Isoelectric Point (pI)

34.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 8 - 100 1.5e-16 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 162 - 256 2.6e-33 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013988)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12010 AT1G62380
fragaria_vesca FvH4_3g01280
malus_domestica MD05G1354000.v1.1 MD10G1328100.v1.1
prunus_persica Prupe.4G013800_v2.0.a1
pyrus_communis pycom05g32140 pycom10g27800 pycom17g07320
rosa_chinensis RchiOBHm_Chr5g0001831
rosa_laevigata RLG00000030975
rosa_multiflora Rmu_ssc0000237.1_g000010
rosa_roxburghii Rroxscaffold_1G00071260 Rroxscaffold_1G00074520
rosa_rugosa Rorug04G0393500
rosa_samantha Rh5DG016100
rosa_wichuraiana Rw5G001410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 581
AccB7I CCANNNNNTGG 2 cut(s) 70, 473
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 779
AclWI GGATC 1 cut(s) 405
AcoI YGGCCR 1 cut(s) 345
AdeI CACNNNGTG 1 cut(s) 715
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 3 cut(s) 70, 473, 673
AgsI TTSAA 3 cut(s) 205, 439, 572
AloI GAACNNNNNNTCC 2 cut(s) 878, 910
AluBI AGCT 5 cut(s) 43, 89, 598, 794, 856
AluI AGCT 5 cut(s) 43, 89, 598, 794, 856
Alw26I GTCTC 5 cut(s) 54, 236, 361, 596, 947
AlwI GGATC 1 cut(s) 405
Ama87I CYCGRG 2 cut(s) 766, 826
AoxI GGCC 3 cut(s) 345, 463, 534
ApaI GGGCCC 1 cut(s) 538
ApeKI GCWGC 3 cut(s) 706, 899, 944
AspS9I GGNCC 4 cut(s) 172, 464, 534, 535
AsuC2I CCSGG 2 cut(s) 767, 768
AsuHPI GGTGA 7 cut(s) 281, 496, 623, 674, 688, 730, 780
AvaI CYCGRG 2 cut(s) 766, 826
AvaII GGWCC 1 cut(s) 172
BaeGI GKGCMC 1 cut(s) 538
BanII GRGCYC 1 cut(s) 538
BbvCI CCTCAGC 1 cut(s) 384
BbvI GCAGC 3 cut(s) 693, 911, 956
BccI CCATC 1 cut(s) 602
BceAI ACGGC 2 cut(s) 360, 932
BclI TGATCA 1 cut(s) 519
BcnI CCSGG 2 cut(s) 767, 768
BcoDI GTCTC 5 cut(s) 54, 236, 361, 596, 947
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 2 cut(s) 918, 939
BglII AGATCT 1 cut(s) 783
BisI GCNGC 3 cut(s) 707, 900, 945
BlsI GCNGC 3 cut(s) 708, 901, 946
Bme1390I CCNGG 2 cut(s) 767, 768
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 2 cut(s) 766, 826
BmgT120I GGNCC 4 cut(s) 172, 464, 534, 535
BmiI GGNNCC 2 cut(s) 536, 888
BmrFI CCNGG 2 cut(s) 767, 768
BmsI GCATC 4 cut(s) 535, 564, 761, 766
BoxI GACNNNNGTC 1 cut(s) 248
BpmI CTGGAG 2 cut(s) 392, 578
Bpu10I CCTNAGC 1 cut(s) 384
BpuEI CTTGAG 3 cut(s) 200, 260, 692
BpuMI CCSGG 2 cut(s) 767, 768
BsaI GGTCTC 2 cut(s) 54, 596
BsaJI CCNNGG 5 cut(s) 69, 124, 766, 882, 890
BsaXI ACNNNNNCTCC 2 cut(s) 878, 908
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 473, 673
Bse1I ACTGG 3 cut(s) 23, 375, 620
Bse3DI GCAATG 1 cut(s) 909
BseDI CCNNGG 5 cut(s) 69, 124, 766, 882, 890
BseGI GGATG 1 cut(s) 747
BseLI CCNNNNNNNGG 3 cut(s) 70, 473, 673
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 1 cut(s) 375
BseNI ACTGG 3 cut(s) 23, 375, 620
BseRI GAGGAG 1 cut(s) 621
BseSI GKGCMC 1 cut(s) 538
BseXI GCAGC 3 cut(s) 693, 911, 956
BsgI GTGCAG 1 cut(s) 692
BshFI GGCC 3 cut(s) 347, 465, 536
BsiHKCI CYCGRG 2 cut(s) 766, 826
BsiSI CCGG 1 cut(s) 767
BslFI GGGAC 1 cut(s) 490
BslI CCNNNNNNNGG 3 cut(s) 70, 473, 673
BsmAI GTCTC 5 cut(s) 54, 236, 361, 596, 947
BsmFI GGGAC 1 cut(s) 490
BsmI GAATGC 1 cut(s) 916
BsnI GGCC 3 cut(s) 347, 465, 536
Bso31I GGTCTC 2 cut(s) 54, 596
BsoBI CYCGRG 2 cut(s) 766, 826
Bsp120I GGGCCC 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 538
Bsp143I GATC 4 cut(s) 153, 397, 519, 783
Bsp19I CCATGG 2 cut(s) 69, 124
BspACI CCGC 1 cut(s) 779
BspANI GGCC 3 cut(s) 347, 465, 536
BspCNI CTCAG 1 cut(s) 376
BspLI GGNNCC 2 cut(s) 536, 888
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 1 cut(s) 405
BspTNI GGTCTC 2 cut(s) 54, 596
BsrDI GCAATG 1 cut(s) 909
BsrI ACTGG 3 cut(s) 23, 375, 620
BssECI CCNNGG 5 cut(s) 69, 124, 766, 882, 890
BssMI GATC 4 cut(s) 153, 397, 519, 783
BssT1I CCWWGG 3 cut(s) 69, 124, 882
Bst4CI ACNGT 3 cut(s) 405, 713, 894
Bst6I CTCTTC 1 cut(s) 48
BstDEI CTNAG 2 cut(s) 384, 530
BstDSI CCRYGG 3 cut(s) 69, 124, 890
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 1 cut(s) 747
BstKTI GATC 4 cut(s) 156, 400, 522, 786
BstMAI GTCTC 5 cut(s) 54, 236, 361, 596, 947
BstMBI GATC 4 cut(s) 153, 397, 519, 783
BstMWI GCNNNNNNNGC 1 cut(s) 886
BstNSI RCATGY 2 cut(s) 189, 214
BstPAI GACNNNNGTC 1 cut(s) 248
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 2 cut(s) 765, 766
BstSFI CTRYAG 2 cut(s) 918, 939
BstSLI GKGCMC 1 cut(s) 538
BstV1I GCAGC 3 cut(s) 693, 911, 956
BstX2I RGATCY 2 cut(s) 397, 783
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 397, 783
BsuRI GGCC 3 cut(s) 347, 465, 536
BtgI CCRYGG 3 cut(s) 69, 124, 890
BtgZI GCGATG 1 cut(s) 789
BtsCI GGATG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 540, 592
Cfr13I GGNCC 4 cut(s) 172, 464, 534, 535
Cfr9I CCCGGG 1 cut(s) 766
Csp6I GTAC 1 cut(s) 823
CspCI CAANNNNNGTGG 2 cut(s) 568, 603
CviQI GTAC 1 cut(s) 823
DdeI CTNAG 2 cut(s) 384, 530
DpnI GATC 4 cut(s) 155, 399, 521, 785
DpnII GATC 4 cut(s) 153, 397, 519, 783
DraIII CACNNNGTG 1 cut(s) 715
DrdI GACNNNNNNGTC 1 cut(s) 581
DseDI GACNNNNNNGTC 1 cut(s) 581
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 48
EarI CTCTTC 1 cut(s) 48
Eco130I CCWWGG 3 cut(s) 69, 124, 882
Eco24I GRGCYC 1 cut(s) 538
Eco31I GGTCTC 2 cut(s) 54, 596
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 2 cut(s) 766, 826
Eco91I GGTNACC 1 cut(s) 662
EcoO109I RGGNCCY 1 cut(s) 534
EcoO65I GGTNACC 1 cut(s) 662
EcoT14I CCWWGG 3 cut(s) 69, 124, 882
EcoT38I GRGCYC 1 cut(s) 538
ErhI CCWWGG 3 cut(s) 69, 124, 882
FaqI GGGAC 1 cut(s) 490
FbaI TGATCA 1 cut(s) 519
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 707, 900, 945
FokI GGATG 1 cut(s) 754
FriOI GRGCYC 1 cut(s) 538
Fsp4HI GCNGC 3 cut(s) 707, 900, 945
FspBI CTAG 1 cut(s) 416
GluI GCNGC 3 cut(s) 707, 900, 945
GsuI CTGGAG 2 cut(s) 392, 578
HaeIII GGCC 3 cut(s) 347, 465, 536
HapII CCGG 1 cut(s) 767
HindIII AAGCTT 2 cut(s) 87, 854
HinfI GANTC 5 cut(s) 376, 412, 721, 815, 934
HpaII CCGG 1 cut(s) 767
HphI GGTGA 7 cut(s) 281, 496, 623, 674, 688, 730, 780
Hpy166II GTNNAC 2 cut(s) 31, 121
Hpy188I TCNGA 3 cut(s) 322, 331, 820
Hpy188III TCNNGA 4 cut(s) 157, 239, 572, 808
Hpy8I GTNNAC 2 cut(s) 31, 121
HpyAV CCTTC 1 cut(s) 725
HpyCH4III ACNGT 3 cut(s) 405, 713, 894
HpyCH4IV ACGT 1 cut(s) 282
HpyCH4V TGCA 5 cut(s) 548, 709, 752, 863, 920
HpyF10VI GCNNNNNNNGC 1 cut(s) 886
HpyF3I CTNAG 2 cut(s) 384, 530
HpySE526I ACGT 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 519
Kzo9I GATC 4 cut(s) 153, 397, 519, 783
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 3 cut(s) 693, 911, 956
LweI GCATC 4 cut(s) 535, 564, 761, 766
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 5 cut(s) 287, 611, 662, 718, 922
MalI GATC 4 cut(s) 155, 399, 521, 785
MboI GATC 4 cut(s) 153, 397, 519, 783
MboII GAAGA 6 cut(s) 19, 65, 172, 266, 451, 919
MflI RGATCY 2 cut(s) 397, 783
MhlI GDGCHC 1 cut(s) 538
MluCI AATT 2 cut(s) 97, 490
MlyI GAGTC 1 cut(s) 715
MmeI TCCRAC 1 cut(s) 375
MnlI CCTC 7 cut(s) 302, 306, 379, 545, 639, 642, 667
MseI TTAA 2 cut(s) 143, 603
MslI CAYNNNNRTG 1 cut(s) 543
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 2 cut(s) 767, 768
Mva1269I GAATGC 1 cut(s) 916
MwoI GCNNNNNNNGC 1 cut(s) 886
NciI CCSGG 2 cut(s) 767, 768
NcoI CCATGG 2 cut(s) 69, 124
NdeII GATC 4 cut(s) 153, 397, 519, 783
NlaIV GGNNCC 2 cut(s) 536, 888
NmuCI GTSAC 4 cut(s) 287, 611, 662, 718
NspI RCATGY 2 cut(s) 189, 214
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 752
PctI GAATGC 1 cut(s) 916
PfeI GAWTC 4 cut(s) 376, 412, 815, 934
PflFI GACNNNGTC 1 cut(s) 581
PflMI CCANNNNNTGG 2 cut(s) 70, 473
PkrI GCNGC 3 cut(s) 708, 901, 946
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
PshAI GACNNNNGTC 1 cut(s) 248
PspEI GGTNACC 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 536, 888
PspOMI GGGCCC 1 cut(s) 534
PspPI GGNCC 4 cut(s) 172, 464, 534, 535
PstI CTGCAG 1 cut(s) 922
PsuI RGATCY 2 cut(s) 397, 783
PsyI GACNNNGTC 1 cut(s) 581
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 2 cut(s) 143, 603
SatI GCNGC 3 cut(s) 707, 900, 945
Sau3AI GATC 4 cut(s) 153, 397, 519, 783
Sau96I GGNCC 4 cut(s) 172, 464, 534, 535
SchI GAGTC 1 cut(s) 715
ScrFI CCNGG 2 cut(s) 767, 768
SduI GDGCHC 1 cut(s) 538
SfaNI GCATC 4 cut(s) 535, 564, 761, 766
SfcI CTRYAG 2 cut(s) 918, 939
SinI GGWCC 1 cut(s) 172
SmaI CCCGGG 1 cut(s) 768
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 3 cut(s) 215, 239, 671
SmoI CTYRAG 3 cut(s) 215, 239, 671
Sse9I AATT 2 cut(s) 97, 490
SsiI CCGC 1 cut(s) 779
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 2 cut(s) 765, 766
StyI CCWWGG 3 cut(s) 69, 124, 882
TaaI ACNGT 3 cut(s) 405, 713, 894
TaiI ACGT 1 cut(s) 285
TaqI TCGA 4 cut(s) 156, 252, 261, 807
TasI AATT 2 cut(s) 97, 490
TfiI GAWTC 4 cut(s) 376, 412, 815, 934
Tru1I TTAA 2 cut(s) 143, 603
Tru9I TTAA 2 cut(s) 143, 603
TscAI CASTG 2 cut(s) 547, 592
TseFI GTSAC 4 cut(s) 287, 611, 662, 718
TseI GCWGC 3 cut(s) 706, 899, 944
Tsp45I GTSAC 4 cut(s) 287, 611, 662, 718
TspDTI ATGAA 7 cut(s) 29, 99, 348, 365, 440, 866, 920
TspMI CCCGGG 1 cut(s) 766
TspRI CASTG 2 cut(s) 547, 592
Tth111I GACNNNGTC 1 cut(s) 581
Van91I CCANNNNNTGG 2 cut(s) 70, 473
VpaK11BI GGWCC 1 cut(s) 172
XceI RCATGY 2 cut(s) 189, 214
XmaI CCCGGG 1 cut(s) 766
XmiI GTMKAC 1 cut(s) 30
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.