AT1G12030

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012095
Physical Location & Seq
Reverse (-)
4064485 .. 4066344
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G12030.1

Sequence Viewer

Length: 888 bp
ATGGTAGAGATAGGAGGACGATTTATCAGAACAGCGGCGGCTTTTGATGTGGCGGCGGCGCGTGCACGCCCTCCGTGCGCTAGCAGCAGCGGAAGCGATCACTCTCCGGATGACACAGAAGATCTTTGGGATCTGGTCGAATCTTTTATCGACAGAGAAGTGGAAACTTTACCTGAGGATGCTTTTCAGGAAGAAGAAGATGATAAATCGGATGAGGATTACGAAGATGTGAAGGAGAGGTTACGGGAGATTCTTGAAAACCACGGAGGCGAAGAGCGGCAGAGAATAATGGATGAGGCGGTAAATGCTAGTCGGGTCTTCGCCGGGGAGAAACGTCACTTTATGGCTTATCTACGTAACAAAGGTTTTGATGCAGGTCTCTGCAAGTCTCGATGGGAGAAATTTGGTAAGAACACGGCTGGGAAGTACGAGTATGTAGACGTTAAGGCAGGAGATAAGAACCGTTACATCGTCGAGACAAATCTTGCCGGAGAGTTCGAGATTGCACGGCCAACGACAAGATACCTCTCCGTCTTAGCTCAAGTGCCACGTGTCTTTGTGGGAACACCTGAGGAGCTGAAACAGCTTGTGAGGATCATGTGCTTTGAGATCAGGCGGTCGATGAAGCGAGCGGATATTTTCGTGCCGCCGTGGAGAAGGAATGGTTATATGCAAGCCAAGTGGTTCGGTCACTATAAACGAACCTCAAACGAAGTGGTGAGTAGGGTTAAGAGCTGCGGCTGTGGACCGCGTGTAGGGTTTGAAGAATCGGTTAAAATGACGACCTTTAATGGTTTTAAAGATGGGGAGATGAGGAGGAGTGGTCTAAAGGTTGGCCAGCTAACGGTGGCTTTCAACGGCAGTGAAGTGGGGTTGCAAATATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

295

Amino Acids

33.66

Weight (kDa)

5.8

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 44 - 234 2.3e-57 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 2 cut(s) 277, 632
AccI GTMKAC 1 cut(s) 438
AccII CGCG 2 cut(s) 61, 751
AccIII TCCGGA 1 cut(s) 106
AclWI GGATC 2 cut(s) 138, 602
AcoI YGGCCR 2 cut(s) 509, 835
AcsI RAATTY 1 cut(s) 401
AcvI CACGTG 1 cut(s) 551
AfaI GTAC 1 cut(s) 428
AfiI CCNNNNNNNGG 2 cut(s) 755, 844
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 3 cut(s) 257, 764, 856
AluBI AGCT 5 cut(s) 539, 577, 586, 735, 841
AluI AGCT 5 cut(s) 539, 577, 586, 735, 841
Alw21I GWGCWC 1 cut(s) 67
Alw26I GTCTC 3 cut(s) 383, 393, 470
Alw44I GTGCAC 1 cut(s) 63
AlwI GGATC 2 cut(s) 138, 602
Aor13HI TCCGGA 1 cut(s) 106
AoxI GGCC 2 cut(s) 509, 835
ApaLI GTGCAC 1 cut(s) 63
ApeKI GCWGC 3 cut(s) 84, 87, 735
ApoI RAATTY 1 cut(s) 401
AspLEI GCGC 2 cut(s) 61, 80
AspS9I GGNCC 1 cut(s) 746
AsuC2I CCSGG 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 730
AsuNHI GCTAGC 1 cut(s) 80
AvaII GGWCC 1 cut(s) 746
AxyI CCTNAGG 2 cut(s) 174, 570
BaeGI GKGCMC 1 cut(s) 67
BalI TGGCCA 1 cut(s) 837
BbrPI CACGTG 1 cut(s) 551
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 96, 99, 722
BccI CCATC 2 cut(s) 387, 797
BceAI ACGGC 4 cut(s) 432, 524, 634, 874
BcnI CCSGG 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 383, 393, 470
BfaI CTAG 2 cut(s) 81, 309
BfuAI ACCTGC 1 cut(s) 365
BglII AGATCT 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 1 cut(s) 746
BmgT120I GGNCC 1 cut(s) 746
BmrFI CCNGG 1 cut(s) 325
BmsI GCATC 2 cut(s) 169, 361
BmtI GCTAGC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 325
BsaAI YACGTR 2 cut(s) 356, 551
BsaI GGTCTC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 262, 324, 650
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 2 cut(s) 808, 838
Bsc4I CCNNNNNNNGG 2 cut(s) 755, 844
Bse21I CCTNAGG 2 cut(s) 174, 570
BseAI TCCGGA 1 cut(s) 106
BseDI CCNNGG 3 cut(s) 262, 324, 650
BseGI GGATG 4 cut(s) 115, 184, 217, 298
BseLI CCNNNNNNNGG 2 cut(s) 755, 844
BseMII CTCAG 2 cut(s) 165, 561
BseRI GAGGAG 3 cut(s) 587, 829, 832
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 3 cut(s) 96, 99, 722
BseYI CCCAGC 1 cut(s) 419
Bsh1236I CGCG 2 cut(s) 61, 751
Bsh1285I CGRYCG 1 cut(s) 620
BshFI GGCC 2 cut(s) 511, 837
BsiEI CGRYCG 1 cut(s) 620
BsiHKAI GWGCWC 1 cut(s) 67
BsiSI CCGG 3 cut(s) 107, 324, 489
BslI CCNNNNNNNGG 2 cut(s) 755, 844
BsmAI GTCTC 3 cut(s) 383, 393, 470
BsnI GGCC 2 cut(s) 511, 837
Bso31I GGTCTC 1 cut(s) 383
Bsp1286I GDGCHC 1 cut(s) 67
Bsp13I TCCGGA 1 cut(s) 106
Bsp143I GATC 5 cut(s) 97, 121, 130, 594, 609
BspANI GGCC 2 cut(s) 511, 837
BspCNI CTCAG 2 cut(s) 166, 562
BspEI TCCGGA 1 cut(s) 106
BspFNI CGCG 2 cut(s) 61, 751
BspMI ACCTGC 1 cut(s) 365
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 2 cut(s) 138, 602
BspQI GCTCTTC 1 cut(s) 267
BspTNI GGTCTC 1 cut(s) 383
BsrBI CCGCTC 2 cut(s) 277, 632
BssECI CCNNGG 3 cut(s) 262, 324, 650
BssMI GATC 5 cut(s) 97, 121, 130, 594, 609
Bst4CI ACNGT 2 cut(s) 464, 847
Bst6I CTCTTC 1 cut(s) 267
BstBAI YACGTR 2 cut(s) 356, 551
BstC8I GCNNGC 6 cut(s) 63, 67, 82, 630, 675, 839
BstDEI CTNAG 3 cut(s) 174, 535, 570
BstDSI CCRYGG 2 cut(s) 262, 650
BstF5I GGATG 4 cut(s) 115, 184, 217, 298
BstFNI CGCG 2 cut(s) 61, 751
BstHHI GCGC 2 cut(s) 61, 80
BstKTI GATC 5 cut(s) 100, 124, 133, 597, 612
BstMAI GTCTC 3 cut(s) 383, 393, 470
BstMBI GATC 5 cut(s) 97, 121, 130, 594, 609
BstMCI CGRYCG 1 cut(s) 620
BstMWI GCNNNNNNNGC 6 cut(s) 62, 75, 84, 93, 305, 583
BstSCI CCNGG 1 cut(s) 323
BstSLI GKGCMC 1 cut(s) 67
BstSNI TACGTA 1 cut(s) 356
BstUI CGCG 2 cut(s) 61, 751
BstV1I GCAGC 3 cut(s) 96, 99, 722
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 121, 130
BstYI RGATCY 2 cut(s) 121, 130
Bsu36I CCTNAGG 2 cut(s) 174, 570
BsuRI GGCC 2 cut(s) 511, 837
BtgI CCRYGG 2 cut(s) 262, 650
BtsCI GGATG 4 cut(s) 115, 184, 217, 298
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 1 cut(s) 868
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 6 cut(s) 63, 67, 82, 630, 675, 839
CfoI GCGC 2 cut(s) 61, 80
Cfr13I GGNCC 1 cut(s) 746
Csp6I GTAC 1 cut(s) 427
CspCI CAANNNNNGTGG 4 cut(s) 662, 696, 697, 731
CviAII CATG 1 cut(s) 598
CviQI GTAC 1 cut(s) 427
DdeI CTNAG 3 cut(s) 174, 535, 570
DpnI GATC 5 cut(s) 99, 123, 132, 596, 611
DpnII GATC 5 cut(s) 97, 121, 130, 594, 609
DraI TTTAAA 1 cut(s) 799
EaeI YGGCCR 2 cut(s) 509, 835
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
Eco105I TACGTA 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 383
Eco47I GGWCC 1 cut(s) 746
Eco72I CACGTG 1 cut(s) 551
Eco81I CCTNAGG 2 cut(s) 174, 570
FaeI CATG 1 cut(s) 601
FaiI YATR 6 cut(s) 344, 435, 599, 669, 671, 696
FatI CATG 1 cut(s) 597
FblI GTMKAC 1 cut(s) 438
FokI GGATG 4 cut(s) 122, 191, 224, 305
FspBI CTAG 2 cut(s) 81, 309
GlaI GCGC 2 cut(s) 60, 79
GsaI CCCAGC 1 cut(s) 423
HaeIII GGCC 2 cut(s) 511, 837
HapII CCGG 3 cut(s) 107, 324, 489
HhaI GCGC 2 cut(s) 61, 80
Hin1II CATG 1 cut(s) 601
Hin6I GCGC 2 cut(s) 59, 78
HinP1I GCGC 2 cut(s) 59, 78
HinfI GANTC 3 cut(s) 140, 250, 767
HpaII CCGG 3 cut(s) 107, 324, 489
HphI GGTGA 1 cut(s) 730
Hpy166II GTNNAC 3 cut(s) 65, 439, 746
Hpy188I TCNGA 2 cut(s) 29, 211
Hpy188III TCNNGA 6 cut(s) 107, 188, 254, 390, 475, 499
Hpy8I GTNNAC 3 cut(s) 65, 439, 746
Hpy99I CGWCG 1 cut(s) 476
HpyAV CCTTC 2 cut(s) 226, 651
HpyCH4III ACNGT 2 cut(s) 464, 847
HpyCH4IV ACGT 4 cut(s) 334, 355, 441, 550
HpyCH4V TGCA 6 cut(s) 65, 374, 384, 506, 673, 877
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 75, 84, 93, 305, 583
HpyF3I CTNAG 3 cut(s) 174, 535, 570
HpySE526I ACGT 4 cut(s) 334, 355, 441, 550
Hsp92II CATG 1 cut(s) 601
HspAI GCGC 2 cut(s) 59, 78
Kpn2I TCCGGA 1 cut(s) 106
Kzo9I GATC 5 cut(s) 97, 121, 130, 594, 609
LguI GCTCTTC 1 cut(s) 267
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 3 cut(s) 96, 99, 722
LweI GCATC 2 cut(s) 169, 361
MaeI CTAG 2 cut(s) 81, 309
MaeII ACGT 4 cut(s) 334, 355, 441, 550
MaeIII GTNAC 5 cut(s) 240, 335, 356, 464, 689
MalI GATC 5 cut(s) 99, 123, 132, 596, 611
MbiI CCGCTC 2 cut(s) 277, 632
MboI GATC 5 cut(s) 97, 121, 130, 594, 609
MboII GAAGA 8 cut(s) 131, 203, 206, 209, 236, 284, 310, 776
MflI RGATCY 2 cut(s) 121, 130
MhlI GDGCHC 1 cut(s) 67
MlsI TGGCCA 1 cut(s) 837
MluCI AATT 1 cut(s) 401
MluNI TGGCCA 1 cut(s) 837
Mox20I TGGCCA 1 cut(s) 837
MroI TCCGGA 1 cut(s) 106
MscI TGGCCA 1 cut(s) 837
MseI TTAA 5 cut(s) 444, 729, 774, 789, 798
Msp20I TGGCCA 1 cut(s) 837
MspA1I CMGCKG 2 cut(s) 35, 90
MspI CCGG 3 cut(s) 107, 324, 489
MspR9I CCNGG 1 cut(s) 325
MvnI CGCG 2 cut(s) 61, 751
MwoI GCNNNNNNNGC 6 cut(s) 62, 75, 84, 93, 305, 583
NciI CCSGG 1 cut(s) 325
NdeII GATC 5 cut(s) 97, 121, 130, 594, 609
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 601
NmuCI GTSAC 2 cut(s) 335, 689
PciSI GCTCTTC 1 cut(s) 267
PfeI GAWTC 3 cut(s) 140, 250, 767
PmaCI CACGTG 1 cut(s) 551
PmlI CACGTG 1 cut(s) 551
Ppu21I YACGTR 2 cut(s) 356, 551
PspCI CACGTG 1 cut(s) 551
PspFI CCCAGC 1 cut(s) 419
PspPI GGNCC 1 cut(s) 746
PsuI RGATCY 2 cut(s) 121, 130
RsaI GTAC 1 cut(s) 428
RsaNI GTAC 1 cut(s) 427
SapI GCTCTTC 1 cut(s) 267
SaqAI TTAA 5 cut(s) 444, 729, 774, 789, 798
Sau3AI GATC 5 cut(s) 97, 121, 130, 594, 609
Sau96I GGNCC 1 cut(s) 746
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 1 cut(s) 67
SfaNI GCATC 2 cut(s) 169, 361
SinI GGWCC 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 540
SmoI CTYRAG 1 cut(s) 540
SnaBI TACGTA 1 cut(s) 356
Sse9I AATT 1 cut(s) 401
SspI AATATT 1 cut(s) 882
SspMI CTAG 2 cut(s) 81, 309
StyD4I CCNGG 1 cut(s) 323
TaaI ACNGT 2 cut(s) 464, 847
TaiI ACGT 4 cut(s) 337, 358, 444, 553
TaqI TCGA 6 cut(s) 138, 150, 391, 474, 498, 620
TaqII GACCGA 1 cut(s) 677
TasI AATT 1 cut(s) 401
TauI GCSGC 7 cut(s) 38, 41, 56, 59, 280, 649, 741
TfiI GAWTC 3 cut(s) 140, 250, 767
Tru1I TTAA 5 cut(s) 444, 729, 774, 789, 798
Tru9I TTAA 5 cut(s) 444, 729, 774, 789, 798
TscAI CASTG 1 cut(s) 868
TseFI GTSAC 2 cut(s) 335, 689
TseI GCWGC 3 cut(s) 84, 87, 735
Tsp45I GTSAC 2 cut(s) 335, 689
TspDTI ATGAA 1 cut(s) 638
TspGWI ACGGA 3 cut(s) 63, 279, 520
TspRI CASTG 1 cut(s) 868
VneI GTGCAC 1 cut(s) 63
VpaK11BI GGWCC 1 cut(s) 746
XapI RAATTY 1 cut(s) 401
XmiI GTMKAC 1 cut(s) 438
XspI CTAG 2 cut(s) 81, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.