MD05G1356900.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0012095
Physical Location & Seq
Reverse (-)
47240551 .. 47241662
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1356900.v1.1.491

Sequence Viewer

Length: 927 bp
ATGGGAGCGGTGAGGTTTCAGAGAGTGGCGGCGGCGTTCGACGAGGTGGCGCGGGTGAGGCTGTGCGAGAGCAGCGGGAGCGAGTACTCCGCGGCGGGGGAGAGTTTTGCGGATTTGTCTGATCTTGTCAAGTCCTTCATCGAGGGAGGGGATTTCGAAGAAGGGGGTGACGACCAAGACGTTGTCCGGAACGAGAAGGAACACTTGGTCGATGAGAAATCGGAGGCCGGTGATTGGTCGGATTCGGAGACCAAGAATTCTTTGGAGAGTTTGTTTTATGTAAAAAGTGACGGGTTGAAGAAGAAGATTGTTACTGAGGTGGAAGTTGCGTTGGCGGGCATCGGGGACGACAATTCGTCTCCGGGATTCAAAAGGAGGTTAATGACTCACTTGCGCCACAAGGGTTTTGATGCTGGCCTTTGCAAATCAAAGTGGGTGAAATCGAGCCGGTTTCCAGCAGGGGACTACGAGTTTGTCGATGTCAACCTCAAAGGAACTCGTTACATTGTCGAACCATTCCTTTTTAGAGAGTTCGAAATTGCTCGTCCCACGACACGTTACACATCGCTCCTTGACGTCTTTCCAAACACATTCGTCGGAGAAGTCGATGAGCTGAAGAAAATCGTGAGGCTAATGTGCACAGAGATCAAAAAATCTATGAAGAGCGTGGACATGTCAATGCCGCCATGGCGGCGAAACGGGTACATGCAGGCCAAATGGTTTGGATCCTACAAGCGCACAACAAATGCATTAGCATCATCAGCCGCCGCCAACGCGACATTGGAATCCAACAATGGATTTGGTGGTGTTAAGAGATCGATGGGGTTTGAGGCCTTGCCTACGAAGTCTTACTATTGCAGAGATGATTTTGCTGGTAAGAATGGCTTGAGAGTTGGGCGTTTGACTGCGGCGTTTCAAGAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

309

Amino Acids

34.38

Weight (kDa)

6.39

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 40 - 246 1.1e-59 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 579
AccBSI CCGCTC 1 cut(s) 8
AccII CGCG 3 cut(s) 52, 92, 776
AccIII TCCGGA 1 cut(s) 186
AclWI GGATC 2 cut(s) 720, 733
AcsI RAATTY 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 2 cut(s) 86, 704
AfiI CCNNNNNNNGG 2 cut(s) 96, 234
AflIII ACRYGT 2 cut(s) 554, 672
AgsI TTSAA 3 cut(s) 298, 370, 917
AhdI GACNNNNNGTC 1 cut(s) 355
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AluBI AGCT 2 cut(s) 613, 922
AluI AGCT 2 cut(s) 613, 922
Alw21I GWGCWC 1 cut(s) 641
Alw26I GTCTC 2 cut(s) 242, 363
Alw44I GTGCAC 1 cut(s) 637
AlwI GGATC 2 cut(s) 720, 733
Aor13HI TCCGGA 1 cut(s) 186
AoxI GGCC 4 cut(s) 225, 415, 711, 831
ApaLI GTGCAC 1 cut(s) 637
ApeKI GCWGC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 256
ArsI GACNNNNNNTTYG 2 cut(s) 455, 487
AspLEI GCGC 3 cut(s) 52, 396, 738
AsuC2I CCSGG 1 cut(s) 363
AsuHPI GGTGA 5 cut(s) 22, 67, 179, 242, 448
AsuII TTCGAA 2 cut(s) 156, 534
BaeGI GKGCMC 1 cut(s) 641
BamHI GGATCC 1 cut(s) 725
Bbv12I GWGCWC 1 cut(s) 641
BbvI GCAGC 1 cut(s) 84
BccI CCATC 1 cut(s) 814
BcnI CCSGG 1 cut(s) 363
BcoDI GTCTC 2 cut(s) 242, 363
BfmI CTRYAG 1 cut(s) 923
BglI GCCNNNNNGGC 2 cut(s) 688, 691
BisI GCNGC 9 cut(s) 30, 33, 73, 93, 683, 692, 765, 768, 909
BlsI GCNGC 9 cut(s) 31, 34, 74, 94, 684, 693, 766, 769, 910
BmcAI AGTACT 1 cut(s) 86
Bme1390I CCNGG 1 cut(s) 363
BmeRI GACNNNNNGTC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 727
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 3 cut(s) 348, 400, 764
Bpu14I TTCGAA 2 cut(s) 156, 534
BpuEI CTTGAG 1 cut(s) 907
BpuMI CCSGG 1 cut(s) 363
Bsa29I ATCGAT 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 576
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 90, 686
BsaWI WCCGGW 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 234
Bse118I RCCGGY 2 cut(s) 227, 447
BseAI TCCGGA 1 cut(s) 186
BseCI ATCGAT 1 cut(s) 818
BseDI CCNNGG 2 cut(s) 90, 686
BseLI CCNNNNNNNGG 2 cut(s) 96, 234
BseMII CTCAG 1 cut(s) 306
BseSI GKGCMC 1 cut(s) 641
BseXI GCAGC 1 cut(s) 84
Bsh1236I CGCG 3 cut(s) 52, 92, 776
BshFI GGCC 4 cut(s) 227, 417, 713, 833
BshVI ATCGAT 1 cut(s) 818
BsiHKAI GWGCWC 1 cut(s) 641
BsiSI CCGG 4 cut(s) 187, 228, 362, 448
BslFI GGGAC 3 cut(s) 359, 476, 531
BslI CCNNNNNNNGG 2 cut(s) 96, 234
BsmAI GTCTC 2 cut(s) 242, 363
BsmBI CGTCTC 1 cut(s) 363
BsmFI GGGAC 3 cut(s) 359, 476, 531
BsnI GGCC 4 cut(s) 227, 417, 713, 833
Bso31I GGTCTC 1 cut(s) 242
Bsp119I TTCGAA 2 cut(s) 156, 534
Bsp1286I GDGCHC 1 cut(s) 641
Bsp13I TCCGGA 1 cut(s) 186
Bsp143I GATC 4 cut(s) 121, 645, 725, 815
Bsp19I CCATGG 1 cut(s) 686
BspANI GGCC 4 cut(s) 227, 417, 713, 833
BspCNI CTCAG 1 cut(s) 307
BspDI ATCGAT 1 cut(s) 818
BspEI TCCGGA 1 cut(s) 186
BspFNI CGCG 3 cut(s) 52, 92, 776
BspLI GGNNCC 1 cut(s) 727
BspPI GGATC 2 cut(s) 720, 733
BspQI GCTCTTC 1 cut(s) 656
BspT104I TTCGAA 2 cut(s) 156, 534
BspTNI GGTCTC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 8
BsrFI RCCGGY 2 cut(s) 227, 447
BssAI RCCGGY 2 cut(s) 227, 447
BssECI CCNNGG 2 cut(s) 90, 686
BssMI GATC 4 cut(s) 121, 645, 725, 815
BssNI GRCGYC 1 cut(s) 576
BssT1I CCWWGG 1 cut(s) 686
Bst6I CTCTTC 1 cut(s) 656
BstACI GRCGYC 1 cut(s) 576
BstBI TTCGAA 2 cut(s) 156, 534
BstC8I GCNNGC 3 cut(s) 337, 415, 711
BstDEI CTNAG 1 cut(s) 315
BstDSI CCRYGG 2 cut(s) 90, 686
BstFNI CGCG 3 cut(s) 52, 92, 776
BstHHI GCGC 3 cut(s) 52, 396, 738
BstKTI GATC 4 cut(s) 124, 648, 728, 818
BstMAI GTCTC 2 cut(s) 242, 363
BstMBI GATC 4 cut(s) 121, 645, 725, 815
BstMWI GCNNNNNNNGC 7 cut(s) 58, 72, 78, 688, 691, 761, 773
BstNSI RCATGY 2 cut(s) 676, 709
BstSCI CCNGG 1 cut(s) 361
BstSFI CTRYAG 1 cut(s) 923
BstSLI GKGCMC 1 cut(s) 641
BstUI CGCG 3 cut(s) 52, 92, 776
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 725
BstYI RGATCY 1 cut(s) 725
Bsu15I ATCGAT 1 cut(s) 818
BsuRI GGCC 4 cut(s) 227, 417, 713, 833
BsuTUI ATCGAT 1 cut(s) 818
BtgI CCRYGG 2 cut(s) 90, 686
BtgZI GCGATG 1 cut(s) 549
Cac8I GCNNGC 3 cut(s) 337, 415, 711
CfoI GCGC 3 cut(s) 52, 396, 738
Cfr10I RCCGGY 2 cut(s) 227, 447
Cfr42I CCGCGG 1 cut(s) 93
ClaI ATCGAT 1 cut(s) 818
Csp6I GTAC 2 cut(s) 85, 703
CviAII CATG 3 cut(s) 673, 687, 706
CviQI GTAC 2 cut(s) 85, 703
DdeI CTNAG 1 cut(s) 315
DpnI GATC 4 cut(s) 123, 647, 727, 817
DpnII GATC 4 cut(s) 121, 645, 725, 815
DriI GACNNNNNGTC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 1 cut(s) 355
EarI CTCTTC 1 cut(s) 656
Eco130I CCWWGG 1 cut(s) 686
Eco147I AGGCCT 1 cut(s) 833
Eco31I GGTCTC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 635
EcoRI GAATTC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 686
EcoT22I ATGCAT 1 cut(s) 751
ErhI CCWWGG 1 cut(s) 686
Esp3I CGTCTC 1 cut(s) 363
FaeI CATG 3 cut(s) 676, 690, 709
FaiI YATR 6 cut(s) 279, 659, 674, 688, 707, 925
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 869, 901
FaqI GGGAC 3 cut(s) 359, 476, 531
FatI CATG 3 cut(s) 672, 686, 705
FauI CCCGC 4 cut(s) 45, 68, 88, 328
Fnu4HI GCNGC 9 cut(s) 30, 33, 73, 93, 683, 692, 765, 768, 909
Fsp4HI GCNGC 9 cut(s) 30, 33, 73, 93, 683, 692, 765, 768, 909
GlaI GCGC 3 cut(s) 51, 395, 737
GluI GCNGC 9 cut(s) 30, 33, 73, 93, 683, 692, 765, 768, 909
HaeIII GGCC 4 cut(s) 227, 417, 713, 833
HapII CCGG 4 cut(s) 187, 228, 362, 448
HhaI GCGC 3 cut(s) 52, 396, 738
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 3 cut(s) 676, 690, 709
Hin6I GCGC 3 cut(s) 50, 394, 736
HinP1I GCGC 3 cut(s) 50, 394, 736
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 4 cut(s) 242, 366, 385, 785
HpaII CCGG 4 cut(s) 187, 228, 362, 448
HphI GGTGA 5 cut(s) 22, 67, 179, 242, 448
Hpy166II GTNNAC 3 cut(s) 484, 639, 670
Hpy188I TCNGA 6 cut(s) 21, 121, 223, 241, 247, 599
Hpy188III TCNNGA 3 cut(s) 187, 625, 917
Hpy8I GTNNAC 3 cut(s) 484, 639, 670
Hpy99I CGWCG 2 cut(s) 44, 599
HpyAV CCTTC 3 cut(s) 145, 155, 190
HpyCH4IV ACGT 3 cut(s) 180, 556, 576
HpyCH4V TGCA 5 cut(s) 423, 639, 709, 749, 858
HpyF10VI GCNNNNNNNGC 7 cut(s) 58, 72, 78, 688, 691, 761, 773
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 3 cut(s) 180, 556, 576
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 3 cut(s) 676, 690, 709
HspAI GCGC 3 cut(s) 50, 394, 736
Kpn2I TCCGGA 1 cut(s) 186
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 4 cut(s) 121, 645, 725, 815
LguI GCTCTTC 1 cut(s) 656
LmnI GCTCC 3 cut(s) 5, 78, 573
LpnPI CCDG 9 cut(s) 200, 241, 375, 399, 444, 461, 468, 695, 858
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 3 cut(s) 348, 400, 764
MaeII ACGT 3 cut(s) 180, 556, 576
MaeIII GTNAC 5 cut(s) 167, 287, 310, 500, 557
MalI GATC 4 cut(s) 123, 647, 727, 817
MbiI CCGCTC 1 cut(s) 8
MboI GATC 4 cut(s) 121, 645, 725, 815
MboII GAAGA 6 cut(s) 170, 310, 313, 316, 628, 673
MflI RGATCY 1 cut(s) 725
MhlI GDGCHC 1 cut(s) 641
MluCI AATT 3 cut(s) 256, 352, 537
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 3 cut(s) 219, 577, 813
Mph1103I ATGCAT 1 cut(s) 751
MroI TCCGGA 1 cut(s) 186
MseI TTAA 2 cut(s) 380, 810
MslI CAYNNNNRTG 1 cut(s) 677
MspA1I CMGCKG 2 cut(s) 75, 92
MspI CCGG 4 cut(s) 187, 228, 362, 448
MspR9I CCNGG 1 cut(s) 363
MvnI CGCG 3 cut(s) 52, 92, 776
MwoI GCNNNNNNNGC 7 cut(s) 58, 72, 78, 688, 691, 761, 773
NciI CCSGG 1 cut(s) 363
NcoI CCATGG 1 cut(s) 686
NdeII GATC 4 cut(s) 121, 645, 725, 815
NlaIII CATG 3 cut(s) 676, 690, 709
NlaIV GGNNCC 1 cut(s) 727
NmuCI GTSAC 2 cut(s) 167, 287
NsiI ATGCAT 1 cut(s) 751
NspI RCATGY 2 cut(s) 676, 709
NspV TTCGAA 2 cut(s) 156, 534
PceI AGGCCT 1 cut(s) 833
PciI ACATGT 1 cut(s) 672
PciSI GCTCTTC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 3 cut(s) 177, 474, 603
PfeI GAWTC 3 cut(s) 242, 366, 785
PflFI GACNNNGTC 1 cut(s) 182
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 9 cut(s) 31, 34, 74, 94, 684, 693, 766, 769, 910
PleI GAGTC 1 cut(s) 379
PpsI GAGTC 1 cut(s) 379
PscI ACATGT 1 cut(s) 672
PspN4I GGNNCC 1 cut(s) 727
PsuI RGATCY 1 cut(s) 725
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 2 cut(s) 86, 704
RsaNI GTAC 2 cut(s) 85, 703
RseI CAYNNNNRTG 1 cut(s) 677
SacII CCGCGG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 656
SaqAI TTAA 2 cut(s) 380, 810
SatI GCNGC 9 cut(s) 30, 33, 73, 93, 683, 692, 765, 768, 909
Sau3AI GATC 4 cut(s) 121, 645, 725, 815
ScaI AGTACT 1 cut(s) 86
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 1 cut(s) 641
SfaNI GCATC 3 cut(s) 348, 400, 764
SfcI CTRYAG 1 cut(s) 923
Sfr303I CCGCGG 1 cut(s) 93
SfuI TTCGAA 2 cut(s) 156, 534
SgrBI CCGCGG 1 cut(s) 93
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 886
SmoI CTYRAG 1 cut(s) 886
Sse9I AATT 3 cut(s) 256, 352, 537
SseBI AGGCCT 1 cut(s) 833
StuI AGGCCT 1 cut(s) 833
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 686
TaiI ACGT 3 cut(s) 183, 559, 579
TasI AATT 3 cut(s) 256, 352, 537
TatI WGTACW 1 cut(s) 84
TauI GCSGC 8 cut(s) 32, 35, 95, 685, 694, 767, 770, 911
TfiI GAWTC 3 cut(s) 242, 366, 785
Tru1I TTAA 2 cut(s) 380, 810
Tru9I TTAA 2 cut(s) 380, 810
TseFI GTSAC 2 cut(s) 167, 287
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 2 cut(s) 167, 287
TspDTI ATGAA 2 cut(s) 127, 674
Tth111I GACNNNGTC 1 cut(s) 182
VneI GTGCAC 1 cut(s) 637
XapI RAATTY 1 cut(s) 256
XceI RCATGY 2 cut(s) 676, 709
XcmI CCANNNNNNNNNTGG 2 cut(s) 259, 778
ZraI GACGTC 1 cut(s) 577
ZrmI AGTACT 1 cut(s) 86
Zsp2I ATGCAT 1 cut(s) 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.