MD10G1330600.v1.1

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0012095
Physical Location & Seq
Reverse (-)
40886401 .. 40887487
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1330600.v1.1.491

Sequence Viewer

Length: 822 bp
ATGGTAGCCGAGATAGTTCGCGATTGTGAATTGGAAAAAATGGTAGCGGTGAGGTTTCAGAGAGTGGCGGCGGCGTTCGACGAGGTGGCGCGGGTGAGGCTGTGCGAGAGCAGCGGAAGCGAGTACTCCGCGGCCGGGGAGAGTTTTGGGGAGTTGTCGGATCTTGTCAAGTCCTTCATCGAGAGAGGGGATTGGGGAGAAGGCGGTGGCCACCGAGACGGCGTACGGAACGAGAACGAGCACTTAGTCGATGAAGACTCAGAGGGCGGTGATTGGTCGGATTCGGAGACGAAGAATTCTCTGGAGAGATTGTTTGATGTGAAGGGTCATGATTTAAAGAAGACGATTGCTGATGAGGTGGAAGTTGCTTTGGCGGGCATTGGGGACGACAAGTCGTCCCGGGCGTTCAAAAGGAGGTTGATGACTCACCTGCGCCACAAGGGTTTTGATGCTGGCCTTTGCAAATCAAAGTGGGTGAAATCGAGCCGGTTTCCAGCAGGGGACCACGAGTTTGTCGATGTCAACCTCAATGGAACTCGTTACGTTGTGGAACCATTCCTTGTTGGACAGTTCGAAATTGCTCGTCCCACGACGCGTTACACATCGCTCCTCGAAGTTTTTCCAAACACATTCGTCGGAGAAGTCGATGAGCTGAAGAAAATCGTGAGGCTAATGTGCACGGCAATAAAAAAATCTATGAAGAGCGTGGACATGCCAATGCCGCCATGGCGGCGGAATGGATACATGCAGGCCAAATGGTTTGAATCTTACAACCGCACAACTACTTCAGTAACACCGTCAGCCGCCGCCAAAGCGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

274

Amino Acids

30.61

Weight (kDa)

5.95

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 53 - 259 2.9e-59 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 438
Acc36I ACCTGC 1 cut(s) 438
AccII CGCG 4 cut(s) 21, 91, 131, 595
AclWI GGATC 1 cut(s) 168
AcoI YGGCCR 2 cut(s) 132, 208
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 674, 771
AfaI GTAC 2 cut(s) 125, 225
AfiI CCNNNNNNNGG 1 cut(s) 135
AflIII ACRYGT 1 cut(s) 593
AgsI TTSAA 2 cut(s) 409, 764
AhdI GACNNNNNGTC 2 cut(s) 391, 394
AluBI AGCT 1 cut(s) 652
AluI AGCT 1 cut(s) 652
Alw21I GWGCWC 2 cut(s) 243, 680
Alw26I GTCTC 2 cut(s) 210, 281
Alw44I GTGCAC 1 cut(s) 676
AlwI GGATC 1 cut(s) 168
Ama87I CYCGRG 1 cut(s) 399
AoxI GGCC 4 cut(s) 132, 208, 454, 750
ApaLI GTGCAC 1 cut(s) 676
ApeKI GCWGC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 295
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
Asp700I GAANNNNTTC 1 cut(s) 618
AspLEI GCGC 2 cut(s) 91, 435
AspS9I GGNCC 1 cut(s) 502
AsuC2I CCSGG 3 cut(s) 136, 400, 401
AsuHPI GGTGA 5 cut(s) 61, 106, 281, 419, 487
AsuII TTCGAA 1 cut(s) 573
AvaI CYCGRG 1 cut(s) 399
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 680
BalI TGGCCA 1 cut(s) 210
BauI CACGAG 1 cut(s) 506
BbsI GAAGAC 2 cut(s) 261, 347
Bbv12I GWGCWC 2 cut(s) 243, 680
BbvI GCAGC 1 cut(s) 123
BceAI ACGGC 2 cut(s) 235, 696
BciVI GTATCC 1 cut(s) 734
BcnI CCSGG 3 cut(s) 136, 400, 401
BcoDI GTCTC 2 cut(s) 210, 281
BfuAI ACCTGC 1 cut(s) 438
BfuI GTATCC 1 cut(s) 734
BglI GCCNNNNNGGC 3 cut(s) 727, 730, 815
BisI GCNGC 9 cut(s) 69, 72, 112, 132, 722, 731, 804, 807, 816
BlsI GCNGC 9 cut(s) 70, 73, 113, 133, 723, 732, 805, 808, 817
BmcAI AGTACT 1 cut(s) 125
Bme1390I CCNGG 3 cut(s) 136, 400, 401
Bme18I GGWCC 1 cut(s) 502
BmeRI GACNNNNNGTC 2 cut(s) 391, 394
BmeT110I CYCGRG 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 2 cut(s) 503, 552
BmrFI CCNGG 3 cut(s) 136, 400, 401
BmsI GCATC 1 cut(s) 439
BpiI GAAGAC 2 cut(s) 261, 347
BpmI CTGGAG 1 cut(s) 323
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 3 cut(s) 136, 400, 401
BsaJI CCNNGG 4 cut(s) 129, 135, 399, 725
BsaXI ACNNNNNCTCC 2 cut(s) 296, 326
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse118I RCCGGY 1 cut(s) 486
BseDI CCNNGG 4 cut(s) 129, 135, 399, 725
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 273
BseRI GAGGAG 1 cut(s) 599
BseSI GKGCMC 1 cut(s) 680
BseX3I CGGCCG 1 cut(s) 132
BseXI GCAGC 1 cut(s) 123
Bsh1236I CGCG 4 cut(s) 21, 91, 131, 595
Bsh1285I CGRYCG 1 cut(s) 135
BshFI GGCC 4 cut(s) 134, 210, 456, 752
BsiEI CGRYCG 1 cut(s) 135
BsiHKAI GWGCWC 2 cut(s) 243, 680
BsiHKCI CYCGRG 1 cut(s) 399
BsiSI CCGG 3 cut(s) 135, 400, 487
BsiWI CGTACG 1 cut(s) 223
BslFI GGGAC 4 cut(s) 382, 398, 515, 570
BslI CCNNNNNNNGG 1 cut(s) 135
BsmAI GTCTC 2 cut(s) 210, 281
BsmBI CGTCTC 2 cut(s) 210, 281
BsmFI GGGAC 4 cut(s) 382, 398, 515, 570
BsnI GGCC 4 cut(s) 134, 210, 456, 752
BsoBI CYCGRG 1 cut(s) 399
Bsp119I TTCGAA 1 cut(s) 573
Bsp1286I GDGCHC 2 cut(s) 243, 680
Bsp143I GATC 1 cut(s) 160
Bsp19I CCATGG 1 cut(s) 725
Bsp68I TCGCGA 1 cut(s) 21
BspANI GGCC 4 cut(s) 134, 210, 456, 752
BspCNI CTCAG 1 cut(s) 272
BspFNI CGCG 4 cut(s) 21, 91, 131, 595
BspHI TCATGA 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 503, 552
BspMI ACCTGC 1 cut(s) 438
BspPI GGATC 1 cut(s) 168
BspQI GCTCTTC 1 cut(s) 695
BspT104I TTCGAA 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 486
BssAI RCCGGY 1 cut(s) 486
BssECI CCNNGG 4 cut(s) 129, 135, 399, 725
BssMI GATC 1 cut(s) 160
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 725
Bst2BI CACGAG 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 570, 798
Bst6I CTCTTC 1 cut(s) 695
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 3 cut(s) 376, 454, 750
BstDEI CTNAG 2 cut(s) 244, 259
BstDSI CCRYGG 2 cut(s) 129, 725
BstFNI CGCG 4 cut(s) 21, 91, 131, 595
BstHHI GCGC 2 cut(s) 91, 435
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 2 cut(s) 210, 281
BstMBI GATC 1 cut(s) 160
BstMCI CGRYCG 1 cut(s) 135
BstMWI GCNNNNNNNGC 8 cut(s) 97, 111, 117, 721, 727, 730, 812, 815
BstNSI RCATGY 2 cut(s) 715, 748
BstSCI CCNGG 3 cut(s) 134, 398, 399
BstSLI GKGCMC 1 cut(s) 680
BstUI CGCG 4 cut(s) 21, 91, 131, 595
BstV1I GCAGC 1 cut(s) 123
BstV2I GAAGAC 2 cut(s) 261, 347
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BstZI CGGCCG 1 cut(s) 132
BsuI GTATCC 1 cut(s) 734
BsuRI GGCC 4 cut(s) 134, 210, 456, 752
BtgI CCRYGG 2 cut(s) 129, 725
BtgZI GCGATG 1 cut(s) 588
BtuMI TCGCGA 1 cut(s) 21
BveI ACCTGC 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 376, 454, 750
CciI TCATGA 1 cut(s) 328
CfoI GCGC 2 cut(s) 91, 435
Cfr10I RCCGGY 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 502
Cfr42I CCGCGG 1 cut(s) 132
Cfr9I CCCGGG 1 cut(s) 399
CseI GACGC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 124, 224
CviAII CATG 4 cut(s) 329, 712, 726, 745
CviQI GTAC 2 cut(s) 124, 224
DdeI CTNAG 2 cut(s) 244, 259
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
DraI TTTAAA 1 cut(s) 336
DriI GACNNNNNGTC 2 cut(s) 391, 394
EaeI YGGCCR 2 cut(s) 132, 208
EagI CGGCCG 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 695
Eam1105I GACNNNNNGTC 2 cut(s) 391, 394
EarI CTCTTC 1 cut(s) 695
EciI GGCGGA 1 cut(s) 748
EclXI CGGCCG 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 725
Eco47I GGWCC 1 cut(s) 502
Eco52I CGGCCG 1 cut(s) 132
Eco57I CTGAAG 2 cut(s) 674, 771
Eco88I CYCGRG 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 295
EcoT14I CCWWGG 1 cut(s) 725
ErhI CCWWGG 1 cut(s) 725
Esp3I CGTCTC 2 cut(s) 210, 281
FaeI CATG 4 cut(s) 332, 715, 729, 748
FaiI YATR 6 cut(s) 330, 698, 713, 727, 746, 820
FaqI GGGAC 4 cut(s) 382, 398, 515, 570
FatI CATG 4 cut(s) 328, 711, 725, 744
FauI CCCGC 2 cut(s) 84, 367
Fnu4HI GCNGC 9 cut(s) 69, 72, 112, 132, 722, 731, 804, 807, 816
Fsp4HI GCNGC 9 cut(s) 69, 72, 112, 132, 722, 731, 804, 807, 816
GlaI GCGC 2 cut(s) 90, 434
GluI GCNGC 9 cut(s) 69, 72, 112, 132, 722, 731, 804, 807, 816
GsuI CTGGAG 1 cut(s) 323
HaeIII GGCC 4 cut(s) 134, 210, 456, 752
HapII CCGG 3 cut(s) 135, 400, 487
HgaI GACGC 1 cut(s) 601
HhaI GCGC 2 cut(s) 91, 435
Hin1II CATG 4 cut(s) 332, 715, 729, 748
Hin6I GCGC 2 cut(s) 89, 433
HinP1I GCGC 2 cut(s) 89, 433
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HinfI GANTC 4 cut(s) 257, 281, 424, 764
HpaII CCGG 3 cut(s) 135, 400, 487
HphI GGTGA 5 cut(s) 61, 106, 281, 419, 487
Hpy166II GTNNAC 3 cut(s) 523, 678, 709
Hpy188I TCNGA 6 cut(s) 60, 160, 262, 280, 286, 638
Hpy188III TCNNGA 5 cut(s) 20, 181, 302, 329, 664
Hpy8I GTNNAC 3 cut(s) 523, 678, 709
Hpy99I CGWCG 3 cut(s) 83, 595, 638
HpyAV CCTTC 3 cut(s) 184, 194, 316
HpyCH4III ACNGT 2 cut(s) 570, 798
HpyCH4IV ACGT 1 cut(s) 543
HpyCH4V TGCA 3 cut(s) 462, 678, 748
HpyF10VI GCNNNNNNNGC 8 cut(s) 97, 111, 117, 721, 727, 730, 812, 815
HpyF3I CTNAG 2 cut(s) 244, 259
HpySE526I ACGT 1 cut(s) 543
Hsp92II CATG 4 cut(s) 332, 715, 729, 748
HspAI GCGC 2 cut(s) 89, 433
KspI CCGCGG 1 cut(s) 132
Kzo9I GATC 1 cut(s) 160
LguI GCTCTTC 1 cut(s) 695
LmnI GCTCC 1 cut(s) 612
LpnPI CCDG 9 cut(s) 148, 287, 413, 438, 443, 483, 500, 507, 734
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 439
MaeII ACGT 1 cut(s) 543
MaeIII GTNAC 3 cut(s) 539, 596, 790
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 5 cut(s) 266, 304, 352, 667, 712
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 2 cut(s) 243, 680
MlsI TGGCCA 1 cut(s) 210
MluCI AATT 3 cut(s) 29, 295, 576
MluI ACGCGT 1 cut(s) 593
MluNI TGGCCA 1 cut(s) 210
MlyI GAGTC 2 cut(s) 251, 418
MmeI TCCRAC 4 cut(s) 138, 258, 544, 616
Mox20I TGGCCA 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 618
MscI TGGCCA 1 cut(s) 210
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 210
MspA1I CMGCKG 2 cut(s) 114, 131
MspI CCGG 3 cut(s) 135, 400, 487
MspR9I CCNGG 3 cut(s) 136, 400, 401
MvnI CGCG 4 cut(s) 21, 91, 131, 595
MwoI GCNNNNNNNGC 8 cut(s) 97, 111, 117, 721, 727, 730, 812, 815
NciI CCSGG 3 cut(s) 136, 400, 401
NcoI CCATGG 1 cut(s) 725
NdeII GATC 1 cut(s) 160
NlaIII CATG 4 cut(s) 332, 715, 729, 748
NlaIV GGNNCC 2 cut(s) 503, 552
NmeAIII GCCGAG 1 cut(s) 34
NruI TCGCGA 1 cut(s) 21
NspI RCATGY 2 cut(s) 715, 748
NspV TTCGAA 1 cut(s) 573
PagI TCATGA 1 cut(s) 328
PaqCI CACCTGC 1 cut(s) 438
PciSI GCTCTTC 1 cut(s) 695
PcsI WCGNNNNNNNCGW 3 cut(s) 401, 513, 642
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 2 cut(s) 281, 764
Pfl23II CGTACG 1 cut(s) 223
PkrI GCNGC 9 cut(s) 70, 73, 113, 133, 723, 732, 805, 808, 817
PleI GAGTC 2 cut(s) 251, 418
PpsI GAGTC 2 cut(s) 251, 418
PspLI CGTACG 1 cut(s) 223
PspN4I GGNNCC 2 cut(s) 503, 552
PspPI GGNCC 1 cut(s) 502
PsuI RGATCY 1 cut(s) 160
RruI TCGCGA 1 cut(s) 21
RsaI GTAC 2 cut(s) 125, 225
RsaNI GTAC 2 cut(s) 124, 224
RseI CAYNNNNRTG 1 cut(s) 716
SacII CCGCGG 1 cut(s) 132
SapI GCTCTTC 1 cut(s) 695
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 9 cut(s) 69, 72, 112, 132, 722, 731, 804, 807, 816
Sau3AI GATC 1 cut(s) 160
Sau96I GGNCC 1 cut(s) 502
ScaI AGTACT 1 cut(s) 125
SchI GAGTC 2 cut(s) 251, 418
ScrFI CCNGG 3 cut(s) 136, 400, 401
SduI GDGCHC 2 cut(s) 243, 680
SetI ASST 8 cut(s) 56, 87, 360, 419, 432, 528, 546, 654
SfaNI GCATC 1 cut(s) 439
Sfr303I CCGCGG 1 cut(s) 132
SfuI TTCGAA 1 cut(s) 573
SgrBI CCGCGG 1 cut(s) 132
SinI GGWCC 1 cut(s) 502
SmaI CCCGGG 1 cut(s) 401
SmiMI CAYNNNNRTG 1 cut(s) 716
Sse9I AATT 3 cut(s) 29, 295, 576
StyD4I CCNGG 3 cut(s) 134, 398, 399
StyI CCWWGG 1 cut(s) 725
TaaI ACNGT 2 cut(s) 570, 798
TaiI ACGT 1 cut(s) 546
TaqI TCGA 8 cut(s) 78, 180, 249, 482, 516, 573, 612, 645
TasI AATT 3 cut(s) 29, 295, 576
TatI WGTACW 1 cut(s) 123
TauI GCSGC 8 cut(s) 71, 74, 134, 724, 733, 806, 809, 818
TfiI GAWTC 2 cut(s) 281, 764
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseI GCWGC 1 cut(s) 111
TspDTI ATGAA 3 cut(s) 166, 267, 713
TspGWI ACGGA 1 cut(s) 241
TspMI CCCGGG 1 cut(s) 399
VneI GTGCAC 1 cut(s) 676
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 295
XceI RCATGY 2 cut(s) 715, 748
XcmI CCANNNNNNNNNTGG 1 cut(s) 723
XmaI CCCGGG 1 cut(s) 399
XmnI GAANNNNTTC 1 cut(s) 618
ZrmI AGTACT 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.