RLG00000030951

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012095
Physical Location & Seq
Forward (+)
863440 .. 864855
1416 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030951

Sequence Viewer

Length: 951 bp
ATGGGAGCAGATAGGATTCCGGTGAGGTTTCAGAGAGTTGCGGCGGCGTTCGACGAGGGGGCGAGGGTAAGGCTGTGCGAGAGCAGCGGCAGCGAGCACTCGGCGGCGGCGGAGAGCGTTGCTGATTTGTCGGACCTTGTCAAGTCTTTTATTGAGCGAGGGAATTATAGAGGGGATTCAAGAGATGATGGTGAGGAAATCGAGAGGGAATCGTTGGAGATGGATGAAGAATTAGAGGGCGGTTATTGGTCTGATTCGGAGACCAAGAATACTCTACGACAGCTGCTTGATCAAAATGGAGGTGGTGATGATGTGAAGGAAAACATTGTTGCTGAGGTAGAACATGCTTGCGGTGTAATTGGGGATAGGTTGGACAGAGAGTTTAAGAGGAAGCTGATGGCTCATTTGCGCCACAAGGGTTTTGATGCTGGCCTGTGCAAATCAAAGTGGGTAAAATCCAGTCGGTTTCCAGCAGGGGACTACGAATTTGTTGATGTCAATGTCAACGGAACTCGTTATATTATCGAGCCATTCTTCACCGGAGAATTTGAAATCGCCCGTCCCACTAGTCGATACACATCGTTACACAATGTTCTGCCACAGATATTCGTCGGAGAAGTTGAAGAGCTGAAGAAAATTGTTCGGATTATGTGCACAGCCATTAAGAAATCCATGAAAGGAGTGGACATGCCGATGCCACCATGGAGGAGAAATGGGTACATGTTAGCCAAGTGGTTTGGTTCCTACAAGCGCACCACAAATGCAGTTCCTTCTTCAAGCAAGGCCTTCGAATTCGATGAGAGTTTAAGCGCAAAGAGATCATTCGGCTTCGAGGTTCTGCCCAGGAAGTCTTACTATTGCAGAGACAGTACTTTTGCTACCAATAACGGATTGAGAATTGGGAACTTGACCGCTGCCTTTCAGCCCAAAGGCATTGGCATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

317

Amino Acids

35.61

Weight (kDa)

6.07

Isoelectric Point (pI)

42.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 44 - 251 1e-60 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 41, 44, 87, 104, 107, 110, 240, 351, 912
AcsI RAATTY 3 cut(s) 485, 545, 791
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 2 cut(s) 719, 871
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 4 cut(s) 180, 551, 623, 777
AhlI ACTAGT 1 cut(s) 566
AjnI CCWGG 1 cut(s) 842
AluBI AGCT 3 cut(s) 283, 394, 628
AluI AGCT 3 cut(s) 283, 394, 628
Alw21I GWGCWC 2 cut(s) 99, 656
Alw26I GTCTC 2 cut(s) 254, 858
Alw44I GTGCAC 1 cut(s) 652
AoxI GGCC 2 cut(s) 430, 783
ApaLI GTGCAC 1 cut(s) 652
ApeKI GCWGC 4 cut(s) 84, 90, 283, 914
ApoI RAATTY 3 cut(s) 485, 545, 791
ArsI GACNNNNNNTTYG 4 cut(s) 470, 502, 857, 889
AspLEI GCGC 3 cut(s) 411, 753, 812
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 4 cut(s) 34, 203, 317, 529
AsuII TTCGAA 1 cut(s) 789
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 99, 656
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 4 cut(s) 96, 102, 270, 901
BccI CCATC 3 cut(s) 182, 214, 391
BcgI CGANNNNNNTGC 2 cut(s) 769, 803
BciT130I CCWGG 1 cut(s) 844
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 2 cut(s) 254, 858
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 1 cut(s) 567
BisI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 915
BlsI GCNGC 9 cut(s) 43, 46, 86, 89, 92, 106, 109, 285, 916
BmcAI AGTACT 1 cut(s) 871
Bme1390I CCNGG 1 cut(s) 844
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 844
BmsI GCATC 2 cut(s) 415, 684
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 1 cut(s) 789
BsaBI GATNNNNATC 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 701, 842
BsaWI WCCGGW 2 cut(s) 19, 539
Bse1I ACTGG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 577
BseBI CCWGG 1 cut(s) 844
BseDI CCNNGG 2 cut(s) 701, 842
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 577
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 721
BseSI GKGCMC 1 cut(s) 656
BseXI GCAGC 4 cut(s) 96, 102, 270, 901
BshFI GGCC 2 cut(s) 432, 785
BsiHKAI GWGCWC 2 cut(s) 99, 656
BsiSI CCGG 2 cut(s) 20, 540
BslFI GGGAC 2 cut(s) 491, 546
BsmAI GTCTC 2 cut(s) 254, 858
BsmFI GGGAC 2 cut(s) 491, 546
BsnI GGCC 2 cut(s) 432, 785
Bso31I GGTCTC 1 cut(s) 254
Bsp119I TTCGAA 1 cut(s) 789
Bsp1286I GDGCHC 2 cut(s) 99, 656
Bsp143I GATC 2 cut(s) 289, 818
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 9 cut(s) 41, 44, 87, 104, 107, 110, 240, 351, 912
BspANI GGCC 2 cut(s) 432, 785
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 1 cut(s) 742
BspQI GCTCTTC 1 cut(s) 618
BspT104I TTCGAA 1 cut(s) 789
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 2 cut(s) 701, 842
BssMI GATC 2 cut(s) 289, 818
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 844
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 1 cut(s) 618
BstBI TTCGAA 1 cut(s) 789
BstC8I GCNNGC 3 cut(s) 95, 349, 430
BstDEI CTNAG 1 cut(s) 333
BstDSI CCRYGG 1 cut(s) 701
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 3 cut(s) 411, 753, 812
BstKTI GATC 2 cut(s) 292, 821
BstMAI GTCTC 2 cut(s) 254, 858
BstMBI GATC 2 cut(s) 289, 818
BstMWI GCNNNNNNNGC 2 cut(s) 84, 90
BstNI CCWGG 1 cut(s) 844
BstNSI RCATGY 3 cut(s) 347, 691, 724
BstSCI CCNGG 1 cut(s) 842
BstSLI GKGCMC 1 cut(s) 656
BstV1I GCAGC 4 cut(s) 96, 102, 270, 901
BsuRI GGCC 2 cut(s) 432, 785
BtgI CCRYGG 1 cut(s) 701
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 95, 349, 430
CfoI GCGC 3 cut(s) 411, 753, 812
Cfr13I GGNCC 1 cut(s) 133
Csp6I GTAC 2 cut(s) 718, 870
CviAII CATG 6 cut(s) 344, 673, 688, 702, 721, 940
CviQI GTAC 2 cut(s) 718, 870
DdeI CTNAG 1 cut(s) 333
DpnI GATC 2 cut(s) 291, 820
DpnII GATC 2 cut(s) 289, 818
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
EciI GGCGGA 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 701
Eco147I AGGCCT 1 cut(s) 785
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 650
EcoRI GAATTC 1 cut(s) 791
EcoRII CCWGG 1 cut(s) 842
EcoT14I CCWWGG 1 cut(s) 701
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 6 cut(s) 347, 676, 691, 705, 724, 943
FaqI GGGAC 2 cut(s) 491, 546
FatI CATG 6 cut(s) 343, 672, 687, 701, 720, 939
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 915
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 915
FspBI CTAG 1 cut(s) 567
GlaI GCGC 3 cut(s) 410, 752, 811
GluI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 915
HaeIII GGCC 2 cut(s) 432, 785
HapII CCGG 2 cut(s) 20, 540
HhaI GCGC 3 cut(s) 411, 753, 812
Hin1II CATG 6 cut(s) 347, 676, 691, 705, 724, 943
Hin6I GCGC 3 cut(s) 409, 751, 810
HinP1I GCGC 3 cut(s) 409, 751, 810
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 4 cut(s) 16, 176, 209, 254
HpaII CCGG 2 cut(s) 20, 540
HphI GGTGA 4 cut(s) 34, 203, 317, 529
Hpy166II GTNNAC 3 cut(s) 505, 654, 685
Hpy188I TCNGA 6 cut(s) 33, 133, 253, 259, 614, 645
Hpy188III TCNNGA 2 cut(s) 180, 202
Hpy8I GTNNAC 3 cut(s) 505, 654, 685
Hpy99I CGWCG 2 cut(s) 56, 614
HpyAV CCTTC 3 cut(s) 310, 780, 796
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4V TGCA 4 cut(s) 438, 654, 764, 861
HpyF10VI GCNNNNNNNGC 2 cut(s) 84, 90
HpyF3I CTNAG 1 cut(s) 333
Hsp92II CATG 6 cut(s) 347, 676, 691, 705, 724, 943
HspAI GCGC 3 cut(s) 409, 751, 810
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 2 cut(s) 289, 818
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 9 cut(s) 33, 414, 446, 459, 472, 483, 553, 829, 856
Lsp1109I GCAGC 4 cut(s) 96, 102, 270, 901
LweI GCATC 2 cut(s) 415, 684
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 1 cut(s) 582
MalI GATC 2 cut(s) 291, 820
MboI GATC 2 cut(s) 289, 818
MboII GAAGA 5 cut(s) 239, 526, 635, 643, 765
MhlI GDGCHC 2 cut(s) 99, 656
MluCI AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 791, 897, 944
MmeI TCCRAC 4 cut(s) 111, 195, 351, 592
MseI TTAA 3 cut(s) 384, 663, 806
MslI CAYNNNNRTG 2 cut(s) 692, 938
MspA1I CMGCKG 3 cut(s) 87, 283, 914
MspI CCGG 2 cut(s) 20, 540
MspR9I CCNGG 1 cut(s) 844
MvaI CCWGG 1 cut(s) 844
MwoI GCNNNNNNNGC 2 cut(s) 84, 90
NcoI CCATGG 1 cut(s) 701
NdeII GATC 2 cut(s) 289, 818
NlaIII CATG 6 cut(s) 347, 676, 691, 705, 724, 943
NlaIV GGNNCC 1 cut(s) 742
NmeAIII GCCGAG 1 cut(s) 80
NspI RCATGY 3 cut(s) 347, 691, 724
NspV TTCGAA 1 cut(s) 789
PceI AGGCCT 1 cut(s) 785
PciI ACATGT 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 16, 176, 209, 254
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 9 cut(s) 43, 46, 86, 89, 92, 106, 109, 285, 916
PscI ACATGT 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 842
PspGI CCWGG 1 cut(s) 842
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 2 cut(s) 719, 871
RsaNI GTAC 2 cut(s) 718, 870
RseI CAYNNNNRTG 2 cut(s) 692, 938
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 384, 663, 806
SatI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 915
Sau3AI GATC 2 cut(s) 289, 818
Sau96I GGNCC 1 cut(s) 133
ScaI AGTACT 1 cut(s) 871
ScrFI CCNGG 1 cut(s) 844
SduI GDGCHC 2 cut(s) 99, 656
SetI ASST 9 cut(s) 29, 138, 285, 304, 339, 371, 396, 630, 837
SfaNI GCATC 2 cut(s) 415, 684
SfuI TTCGAA 1 cut(s) 789
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 692, 938
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 791, 897, 944
SseBI AGGCCT 1 cut(s) 785
SsiI CCGC 9 cut(s) 41, 44, 87, 104, 107, 110, 240, 351, 912
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 785
StyD4I CCNGG 1 cut(s) 842
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 1 cut(s) 869
TaqI TCGA 7 cut(s) 51, 201, 525, 571, 789, 795, 831
TasI AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 791, 897, 944
TatI WGTACW 1 cut(s) 869
TauI GCSGC 5 cut(s) 44, 47, 90, 107, 110
TfiI GAWTC 4 cut(s) 16, 176, 209, 254
Tru1I TTAA 3 cut(s) 384, 663, 806
Tru9I TTAA 3 cut(s) 384, 663, 806
TseI GCWGC 4 cut(s) 84, 90, 283, 914
TspDTI ATGAA 2 cut(s) 240, 689
TspGWI ACGGA 2 cut(s) 522, 903
Tth111I GACNNNGTC 1 cut(s) 137
VneI GTGCAC 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 3 cut(s) 485, 545, 791
XceI RCATGY 3 cut(s) 347, 691, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XspI CTAG 1 cut(s) 567
ZrmI AGTACT 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.