FvH4_3g01080

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012095
Physical Location & Seq
Forward (+)
544636 .. 547050
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01080.t1

Sequence Viewer

Length: 951 bp
ATGGGAGCATATAGAATTAATCCGGCGAGGTTTCAGAGAGTTGCGGCTGCGTTTGACGAGGGGGCCAGGGTGAGGCTGTGCGAGAGCAGCGGCAGCGAGCACTCGGCTGCGGCGGAGAGCGTTGCCGATTTGTCTGACCTTGTTAATTCTTTTATTGAGCGAGGGAATTATAGTGGGGATTCAAGGGATGATGGTGAGGAAATCGAGAGGGATTCGTTGGAGACGGATGAAGAGGTAGAGGGTGGCTATCGGTCTGATTCGGAGACCAAGAATACTCTACAACAGCTGCTTCATACAAATGGAGGTGGTGATGATGTGAAAGAAAACATTGTTGCTGAGGTTGAACATGCTTGCGGTGTAATCGGGGATAGGTTGGACAGAGAGTTCAAGAGGAAGCTGACGACTCATTTGCGCCACAAGGGTTTTGATGCTGGTCTCTGCAAGTCAAAGTGGGTAAAATCCAGTCGGTTTCCAGCAGGGGACTACGAATTTGTTGATGTCAATGTAAATGGAACTCGTTACATTGTCGAGCCATTCTTCACCGGAGAATTTGAAATCGCCCGTCCCACTAGTCGATACACATCCTTACACAATGTCTTGCCTCAAATATTCGTGGGAGAACTCGACGAGCTGAAGAAAATTGTTAGGATTATGTGCGCAGCTATTAAGAAGTCCATGAAGAGTGTCGACATGCCAATGCCACCATGGAGGAGAAATGGGTACATGCTAGCAAAGTGGTTTGGTTCCTATAAGCGCACCACAAATGCAGTTTCTTCTTCAACAAAGGCATTCGAATTCGAGGAGAGTTTCAGTGTAAAAAGATCAGTTGGCTTCGAGGCTCTGCCCCCAAAGTCTTACTATTGCAGAGACAGTTTTGCTACCAAGAATGGATTGAGAATTGGGAACCTGACTGCCGCCTTTCAATCCAAAGGCATCGGCATGGAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

317

Amino Acids

35.37

Weight (kDa)

6.15

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 45 - 252 2.7e-61 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 658
AccI GTMKAC 1 cut(s) 687
AciI CCGC 6 cut(s) 44, 90, 110, 113, 354, 915
AcsI RAATTY 3 cut(s) 488, 548, 794
AcuI CTGAAG 1 cut(s) 653
AfaI GTAC 1 cut(s) 722
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 6 cut(s) 183, 344, 388, 554, 780, 923
AhlI ACTAGT 1 cut(s) 569
AjnI CCWGG 1 cut(s) 65
AloI GAACNNNNNNTCC 2 cut(s) 368, 400
AluBI AGCT 4 cut(s) 286, 397, 631, 662
AluI AGCT 4 cut(s) 286, 397, 631, 662
Alw21I GWGCWC 1 cut(s) 102
Alw26I GTCTC 4 cut(s) 215, 257, 440, 861
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 6 cut(s) 47, 87, 93, 107, 286, 659
ApoI RAATTY 3 cut(s) 488, 548, 794
ArsI GACNNNNNNTTYG 4 cut(s) 391, 423, 473, 505
AseI ATTAAT 1 cut(s) 18
AspLEI GCGC 3 cut(s) 414, 659, 756
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 4 cut(s) 82, 206, 320, 532
AsuII TTCGAA 1 cut(s) 792
AsuNHI GCTAGC 1 cut(s) 727
Bbv12I GWGCWC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 336
BbvI GCAGC 6 cut(s) 34, 94, 99, 105, 273, 671
BccI CCATC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 67
BcoDI GTCTC 4 cut(s) 215, 257, 440, 861
BcuI ACTAGT 1 cut(s) 569
BfaI CTAG 2 cut(s) 570, 728
Bme1390I CCNGG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 63
BmiI GGNNCC 3 cut(s) 64, 745, 905
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 2 cut(s) 418, 942
BmtI GCTAGC 1 cut(s) 731
Bpu10I CCTNAGC 1 cut(s) 336
Bpu14I TTCGAA 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 580
BsaI GGTCTC 2 cut(s) 257, 440
BsaJI CCNNGG 2 cut(s) 66, 704
BsaWI WCCGGW 1 cut(s) 542
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 462
Bse8I GATNNNNATC 1 cut(s) 580
BseBI CCWGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 66, 704
BseGI GGATG 3 cut(s) 193, 232, 581
BseJI GATNNNNATC 1 cut(s) 580
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 2 cut(s) 724, 815
BseXI GCAGC 6 cut(s) 34, 94, 99, 105, 273, 671
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 102
BsiSI CCGG 2 cut(s) 23, 543
BslFI GGGAC 2 cut(s) 494, 549
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 4 cut(s) 215, 257, 440, 861
BsmBI CGTCTC 1 cut(s) 215
BsmFI GGGAC 2 cut(s) 494, 549
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 2 cut(s) 257, 440
Bsp119I TTCGAA 1 cut(s) 792
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 1 cut(s) 821
Bsp19I CCATGG 1 cut(s) 704
BspACI CCGC 6 cut(s) 44, 90, 110, 113, 354, 915
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 3 cut(s) 64, 745, 905
BspOI GCTAGC 1 cut(s) 731
BspT104I TTCGAA 1 cut(s) 792
BspTNI GGTCTC 2 cut(s) 257, 440
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 2 cut(s) 66, 704
BssMI GATC 1 cut(s) 821
BssT1I CCWWGG 1 cut(s) 704
Bst2UI CCWGG 1 cut(s) 67
Bst4CI ACNGT 1 cut(s) 872
Bst6I CTCTTC 2 cut(s) 225, 674
BstBI TTCGAA 1 cut(s) 792
BstC8I GCNNGC 3 cut(s) 98, 352, 729
BstDEI CTNAG 1 cut(s) 336
BstDSI CCRYGG 1 cut(s) 704
BstF5I GGATG 3 cut(s) 193, 232, 581
BstHHI GCGC 3 cut(s) 414, 659, 756
BstKTI GATC 1 cut(s) 824
BstMAI GTCTC 4 cut(s) 215, 257, 440, 861
BstMBI GATC 1 cut(s) 821
BstMWI GCNNNNNNNGC 2 cut(s) 87, 93
BstNI CCWGG 1 cut(s) 67
BstNSI RCATGY 3 cut(s) 350, 694, 727
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 6 cut(s) 34, 94, 99, 105, 273, 671
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 704
BtsCI GGATG 3 cut(s) 193, 232, 581
BtsIMutI CAGTG 1 cut(s) 817
Cac8I GCNNGC 3 cut(s) 98, 352, 729
CfoI GCGC 3 cut(s) 414, 659, 756
Cfr13I GGNCC 1 cut(s) 63
Csp6I GTAC 1 cut(s) 721
CviAII CATG 6 cut(s) 347, 676, 691, 705, 724, 940
CviQI GTAC 1 cut(s) 721
DdeI CTNAG 1 cut(s) 336
DpnI GATC 1 cut(s) 823
DpnII GATC 1 cut(s) 821
Eam1104I CTCTTC 2 cut(s) 225, 674
EarI CTCTTC 2 cut(s) 225, 674
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 704
Eco31I GGTCTC 2 cut(s) 257, 440
Eco57I CTGAAG 1 cut(s) 653
EcoRI GAATTC 1 cut(s) 794
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 704
ErhI CCWWGG 1 cut(s) 704
Esp3I CGTCTC 1 cut(s) 215
FaeI CATG 6 cut(s) 350, 679, 694, 708, 727, 943
FaqI GGGAC 2 cut(s) 494, 549
FatI CATG 6 cut(s) 346, 675, 690, 704, 723, 939
FblI GTMKAC 1 cut(s) 687
FokI GGATG 3 cut(s) 200, 239, 568
FspBI CTAG 2 cut(s) 570, 728
FspI TGCGCA 1 cut(s) 658
GlaI GCGC 3 cut(s) 413, 658, 755
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 23, 543
HhaI GCGC 3 cut(s) 414, 659, 756
Hin1II CATG 6 cut(s) 350, 679, 694, 708, 727, 943
Hin6I GCGC 3 cut(s) 412, 657, 754
HinP1I GCGC 3 cut(s) 412, 657, 754
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HinfI GANTC 4 cut(s) 179, 212, 257, 403
HpaII CCGG 2 cut(s) 23, 543
HphI GGTGA 4 cut(s) 82, 206, 320, 532
Hpy166II GTNNAC 1 cut(s) 688
Hpy188I TCNGA 4 cut(s) 36, 136, 256, 262
Hpy188III TCNNGA 2 cut(s) 205, 388
Hpy8I GTNNAC 1 cut(s) 688
Hpy99I CGWCG 1 cut(s) 629
HpyCH4III ACNGT 1 cut(s) 872
HpyCH4V TGCA 3 cut(s) 441, 767, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 87, 93
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 6 cut(s) 350, 679, 694, 708, 727, 943
HspAI GCGC 3 cut(s) 412, 657, 754
Kzo9I GATC 1 cut(s) 821
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 9 cut(s) 36, 52, 79, 417, 462, 475, 486, 556, 920
Lsp1109I GCAGC 6 cut(s) 34, 94, 99, 105, 273, 671
LweI GCATC 2 cut(s) 418, 942
MaeI CTAG 2 cut(s) 570, 728
MaeIII GTNAC 1 cut(s) 518
MalI GATC 1 cut(s) 823
MboI GATC 1 cut(s) 821
MboII GAAGA 6 cut(s) 242, 529, 646, 691, 765, 768
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 8 cut(s) 15, 145, 166, 488, 548, 639, 794, 897
MlyI GAGTC 1 cut(s) 397
MmeI TCCRAC 2 cut(s) 198, 354
MseI TTAA 3 cut(s) 18, 144, 666
MslI CAYNNNNRTG 3 cut(s) 297, 695, 938
MspA1I CMGCKG 2 cut(s) 90, 286
MspI CCGG 2 cut(s) 23, 543
MspR9I CCNGG 1 cut(s) 67
Mva1269I GAATGC 1 cut(s) 788
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 87, 93
NcoI CCATGG 1 cut(s) 704
NdeII GATC 1 cut(s) 821
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 6 cut(s) 350, 679, 694, 708, 727, 943
NlaIV GGNNCC 3 cut(s) 64, 745, 905
NmeAIII GCCGAG 1 cut(s) 83
NsbI TGCGCA 1 cut(s) 658
NspI RCATGY 3 cut(s) 350, 694, 727
NspV TTCGAA 1 cut(s) 792
PctI GAATGC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 179, 212, 257
PleI GAGTC 1 cut(s) 397
PpsI GAGTC 1 cut(s) 397
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 65
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 3 cut(s) 64, 745, 905
PspPI GGNCC 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 722
RsaNI GTAC 1 cut(s) 721
RseI CAYNNNNRTG 3 cut(s) 297, 695, 938
SalI GTCGAC 1 cut(s) 686
SaqAI TTAA 3 cut(s) 18, 144, 666
Sau3AI GATC 1 cut(s) 821
Sau96I GGNCC 1 cut(s) 63
SchI GAGTC 1 cut(s) 397
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 102
SfaNI GCATC 2 cut(s) 418, 942
SfuI TTCGAA 1 cut(s) 792
SmiMI CAYNNNNRTG 3 cut(s) 297, 695, 938
SpeI ACTAGT 1 cut(s) 569
Sse9I AATT 8 cut(s) 15, 145, 166, 488, 548, 639, 794, 897
SsiI CCGC 6 cut(s) 44, 90, 110, 113, 354, 915
SspI AATATT 1 cut(s) 609
SspMI CTAG 2 cut(s) 570, 728
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 704
TaaI ACNGT 1 cut(s) 872
TaqI TCGA 8 cut(s) 204, 528, 574, 624, 687, 792, 798, 834
TaqII GACCGA 1 cut(s) 240
TasI AATT 8 cut(s) 15, 145, 166, 488, 548, 639, 794, 897
TauI GCSGC 4 cut(s) 47, 93, 113, 917
TfiI GAWTC 3 cut(s) 179, 212, 257
Tru1I TTAA 3 cut(s) 18, 144, 666
Tru9I TTAA 3 cut(s) 18, 144, 666
TscAI CASTG 1 cut(s) 817
TseI GCWGC 6 cut(s) 47, 87, 93, 107, 286, 659
TspDTI ATGAA 3 cut(s) 243, 281, 692
TspGWI ACGGA 1 cut(s) 239
TspRI CASTG 1 cut(s) 817
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 3 cut(s) 488, 548, 794
XceI RCATGY 3 cut(s) 350, 694, 727
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XmiI GTMKAC 1 cut(s) 687
XspI CTAG 2 cut(s) 570, 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.