AT1G62420

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012095
Physical Location & Seq
Reverse (-)
23102777 .. 23104756
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G62420.1

Sequence Viewer

Length: 852 bp
ATGGTTGAGATTCAGGGAAGATTCAAAAGAATTGAGTCGGCTTTCAACGTAGCCGCGGCTCGTGTACATCCACCGTGTGATAACAGTAGCGGAAGCGATCATTCGCCGGATCTTTCCGATTTGGTCGCATCTTTTATAGAGAAAGAGGGACAAATAGTATTACGTGAAGAAGAAGAAACTTCTTCCGACGATAACAATTTGGAAGATGTGAATGAGAGGTTACGGAAGCTTCTAGAAGGTTTATCCTGTGGCGAAGAGCGGATGAGAATACTGTCAGCGACGATGGAGGTTGCTGGAACGTTCGTCGGAGATATTAGTTCTTCTAAGCGTCACTTAATGGCGTTTCTACGTAACAAGGGTTTTGATGCAGGTCTTTGCAAGTCGAGTTGGGAAAGATTCGGCAAAAACACCGGCGGAAAATACGAGTACGTCGACGTTCGTTGTGGCGGAGATTATAATAATCGGTATTTCGTCGAGACAAACCTTGCCGGAGAGTTTGAGATAGCTAGACCAACGAAAAGGTACCTCTCAATACTAAGCCAAGTGCCACGCGTCTTCGTGGGAACTTCAGAGGAACTGAAACTGCTCGTGAGAATCATGTGCCATGAGATGAGACGGTCGATGAAGCACGTAGGGATCCACGTGCCACCGTGGAGGAGAAACGGTTACATGCAAGCTAAGTGGTTCGGTTTCTATAAACGAACTTCGACGACCAATAACTACGAAATGGTTAATACTTATGATACGACTGCGTTTAAGGGTTGCAAGGAAGAGTTTTGGGAAGCTAAAGGTCTTAAGGTTATGGTTGGTCAGCTTTCGATTGCTTTCAACATTAGTGCGGTTGAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

283

Amino Acids

32.22

Weight (kDa)

7.01

Isoelectric Point (pI)

45.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 40 - 234 1.1e-57 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 359
Acc65I GGTACC 1 cut(s) 522
AccB1I GGYRCC 1 cut(s) 522
AccBSI CCGCTC 1 cut(s) 259
AccI GTMKAC 1 cut(s) 432
AccII CGCG 2 cut(s) 56, 552
AciI CCGC 7 cut(s) 54, 56, 90, 259, 414, 447, 839
AclI AACGTT 1 cut(s) 299
AclWI GGATC 3 cut(s) 117, 631, 644
AcuI CTGAAG 1 cut(s) 552
AcvI CACGTG 1 cut(s) 643
AdeI CACNNNGTG 1 cut(s) 77
AfaI GTAC 3 cut(s) 66, 428, 524
AflII CTTAAG 1 cut(s) 794
AflIII ACRYGT 1 cut(s) 550
AgsI TTSAA 4 cut(s) 25, 46, 829, 845
AluBI AGCT 5 cut(s) 229, 506, 677, 785, 814
AluI AGCT 5 cut(s) 229, 506, 677, 785, 814
Alw26I GTCTC 2 cut(s) 470, 607
AlwI GGATC 3 cut(s) 117, 631, 644
Asp718I GGTACC 1 cut(s) 522
BamHI GGATCC 1 cut(s) 636
BanI GGYRCC 1 cut(s) 522
BauI CACGAG 2 cut(s) 60, 587
BbrPI CACGTG 1 cut(s) 643
BbsI GAAGAC 1 cut(s) 547
BccI CCATC 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 470, 607
BfaI CTAG 2 cut(s) 233, 507
BfrI CTTAAG 1 cut(s) 794
BfuAI ACCTGC 1 cut(s) 359
BisI GCNGC 2 cut(s) 54, 57
BlsI GCNGC 2 cut(s) 55, 58
BmiI GGNNCC 2 cut(s) 524, 638
BmsI GCATC 2 cut(s) 137, 355
BpiI GAAGAC 1 cut(s) 547
BsaAI YACGTR 4 cut(s) 164, 350, 631, 643
BsaJI CCNNGG 2 cut(s) 54, 650
BsaXI ACNNNNNCTCC 2 cut(s) 649, 679
Bse118I RCCGGY 1 cut(s) 410
BseDI CCNNGG 2 cut(s) 54, 650
BseGI GGATG 2 cut(s) 67, 267
BseRI GAGGAG 1 cut(s) 670
Bsh1236I CGCG 2 cut(s) 56, 552
Bsh1285I CGRYCG 1 cut(s) 620
BshNI GGYRCC 1 cut(s) 522
BsiEI CGRYCG 1 cut(s) 620
BsiSI CCGG 3 cut(s) 107, 411, 489
BslFI GGGAC 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 470, 607
BsmBI CGTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 162
Bsp1407I TGTACA 1 cut(s) 64
Bsp143I GATC 3 cut(s) 97, 109, 636
BspACI CCGC 7 cut(s) 54, 56, 90, 259, 414, 447, 839
BspFNI CGCG 2 cut(s) 56, 552
BspLI GGNNCC 2 cut(s) 524, 638
BspMI ACCTGC 1 cut(s) 359
BspPI GGATC 3 cut(s) 117, 631, 644
BspQI GCTCTTC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 522
BspTI CTTAAG 1 cut(s) 794
BsrBI CCGCTC 1 cut(s) 259
BsrFI RCCGGY 1 cut(s) 410
BsrGI TGTACA 1 cut(s) 64
BssAI RCCGGY 1 cut(s) 410
BssECI CCNNGG 2 cut(s) 54, 650
BssMI GATC 3 cut(s) 97, 109, 636
BssSI CACGAG 2 cut(s) 60, 587
Bst2BI CACGAG 2 cut(s) 60, 587
Bst4CI ACNGT 6 cut(s) 75, 86, 273, 618, 651, 665
Bst6I CTCTTC 2 cut(s) 249, 765
BstAFI CTTAAG 1 cut(s) 794
BstAUI TGTACA 1 cut(s) 64
BstBAI YACGTR 4 cut(s) 164, 350, 631, 643
BstC8I GCNNGC 1 cut(s) 675
BstDEI CTNAG 3 cut(s) 324, 536, 678
BstDSI CCRYGG 2 cut(s) 54, 650
BstF5I GGATG 2 cut(s) 67, 267
BstFNI CGCG 2 cut(s) 56, 552
BstKTI GATC 3 cut(s) 100, 112, 639
BstMAI GTCTC 2 cut(s) 470, 607
BstMBI GATC 3 cut(s) 97, 109, 636
BstMCI CGRYCG 1 cut(s) 620
BstNSI RCATGY 1 cut(s) 673
BstSNI TACGTA 1 cut(s) 350
BstUI CGCG 2 cut(s) 56, 552
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 109, 636
BstYI RGATCY 2 cut(s) 109, 636
BtgI CCRYGG 2 cut(s) 54, 650
BtsCI GGATG 2 cut(s) 67, 267
BveI ACCTGC 1 cut(s) 359
Cac8I GCNNGC 1 cut(s) 675
Cfr10I RCCGGY 1 cut(s) 410
Cfr42I CCGCGG 1 cut(s) 57
CseI GACGC 2 cut(s) 317, 541
Csp6I GTAC 3 cut(s) 65, 427, 523
CspCI CAANNNNNGTGG 2 cut(s) 662, 697
CviAII CATG 3 cut(s) 598, 605, 670
CviJI RGCY 9 cut(s) 41, 53, 59, 229, 506, 540, 677, 785, 814
CviKI_1 RGCY 9 cut(s) 41, 53, 59, 229, 506, 540, 677, 785, 814
CviQI GTAC 3 cut(s) 65, 427, 523
DdeI CTNAG 3 cut(s) 324, 536, 678
DpnI GATC 3 cut(s) 99, 111, 638
DpnII GATC 3 cut(s) 97, 109, 636
DraIII CACNNNGTG 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 249, 765
EarI CTCTTC 2 cut(s) 249, 765
EciI GGCGGA 2 cut(s) 429, 462
Eco105I TACGTA 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 643
Esp3I CGTCTC 1 cut(s) 607
FaeI CATG 3 cut(s) 601, 608, 673
FaiI YATR 8 cut(s) 137, 456, 599, 606, 671, 696, 741, 803
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FaqI GGGAC 1 cut(s) 162
FatI CATG 3 cut(s) 597, 604, 669
FblI GTMKAC 1 cut(s) 432
Fnu4HI GCNGC 2 cut(s) 54, 57
FokI GGATG 2 cut(s) 54, 274
Fsp4HI GCNGC 2 cut(s) 54, 57
FspBI CTAG 2 cut(s) 233, 507
GluI GCNGC 2 cut(s) 54, 57
HapII CCGG 3 cut(s) 107, 411, 489
HgaI GACGC 2 cut(s) 317, 541
Hin1II CATG 3 cut(s) 601, 608, 673
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 5 cut(s) 10, 21, 35, 396, 594
HpaII CCGG 3 cut(s) 107, 411, 489
Hpy166II GTNNAC 2 cut(s) 65, 433
Hpy188I TCNGA 4 cut(s) 118, 187, 308, 571
Hpy188III TCNNGA 3 cut(s) 233, 475, 589
Hpy8I GTNNAC 2 cut(s) 65, 433
Hpy99I CGWCG 7 cut(s) 191, 283, 308, 434, 437, 476, 712
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 6 cut(s) 75, 86, 273, 618, 651, 665
HpyCH4IV ACGT 8 cut(s) 48, 163, 299, 349, 429, 435, 630, 642
HpyCH4V TGCA 4 cut(s) 368, 378, 673, 765
HpyF3I CTNAG 3 cut(s) 324, 536, 678
HpySE526I ACGT 8 cut(s) 48, 163, 299, 349, 429, 435, 630, 642
Hsp92II CATG 3 cut(s) 601, 608, 673
KpnI GGTACC 1 cut(s) 526
KspI CCGCGG 1 cut(s) 57
Kzo9I GATC 3 cut(s) 97, 109, 636
LguI GCTCTTC 1 cut(s) 249
LpnPI CCDG 6 cut(s) 120, 259, 279, 354, 424, 502
LweI GCATC 2 cut(s) 137, 355
MaeI CTAG 2 cut(s) 233, 507
MaeII ACGT 8 cut(s) 48, 163, 299, 349, 429, 435, 630, 642
MaeIII GTNAC 4 cut(s) 219, 329, 350, 665
MalI GATC 3 cut(s) 99, 111, 638
MbiI CCGCTC 1 cut(s) 259
MboI GATC 3 cut(s) 97, 109, 636
MflI RGATCY 2 cut(s) 109, 636
MluCI AATT 2 cut(s) 30, 196
MluI ACGCGT 1 cut(s) 550
MlyI GAGTC 1 cut(s) 44
MmeI TCCRAC 2 cut(s) 210, 286
MnlI CCTC 6 cut(s) 139, 210, 280, 536, 565, 648
MseI TTAA 4 cut(s) 335, 732, 756, 795
MspA1I CMGCKG 1 cut(s) 56
MspCI CTTAAG 1 cut(s) 794
MspI CCGG 3 cut(s) 107, 411, 489
MvnI CGCG 2 cut(s) 56, 552
NdeII GATC 3 cut(s) 97, 109, 636
NlaIII CATG 3 cut(s) 601, 608, 673
NlaIV GGNNCC 2 cut(s) 524, 638
NmuCI GTSAC 1 cut(s) 329
NspI RCATGY 1 cut(s) 673
PciSI GCTCTTC 1 cut(s) 249
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 4 cut(s) 10, 21, 396, 594
PkrI GCNGC 2 cut(s) 55, 58
PleI GAGTC 1 cut(s) 43
PmaCI CACGTG 1 cut(s) 643
PmlI CACGTG 1 cut(s) 643
PpsI GAGTC 1 cut(s) 43
Ppu21I YACGTR 4 cut(s) 164, 350, 631, 643
PsiI TTATAA 1 cut(s) 456
Psp1406I AACGTT 1 cut(s) 299
PspCI CACGTG 1 cut(s) 643
PspN4I GGNNCC 2 cut(s) 524, 638
PsuI RGATCY 2 cut(s) 109, 636
RsaI GTAC 3 cut(s) 66, 428, 524
RsaNI GTAC 3 cut(s) 65, 427, 523
SacII CCGCGG 1 cut(s) 57
SalI GTCGAC 1 cut(s) 431
SapI GCTCTTC 1 cut(s) 249
SaqAI TTAA 4 cut(s) 335, 732, 756, 795
SatI GCNGC 2 cut(s) 54, 57
Sau3AI GATC 3 cut(s) 97, 109, 636
SchI GAGTC 1 cut(s) 44
SfaNI GCATC 2 cut(s) 137, 355
Sfr303I CCGCGG 1 cut(s) 57
SgrAI CRCCGGYG 1 cut(s) 410
SgrBI CCGCGG 1 cut(s) 57
SgrDI CGTCGACG 1 cut(s) 431
SmlI CTYRAG 1 cut(s) 794
SmoI CTYRAG 1 cut(s) 794
SnaBI TACGTA 1 cut(s) 350
Sse9I AATT 2 cut(s) 30, 196
SsiI CCGC 7 cut(s) 54, 56, 90, 259, 414, 447, 839
SspMI CTAG 2 cut(s) 233, 507
TaaI ACNGT 6 cut(s) 75, 86, 273, 618, 651, 665
TaiI ACGT 8 cut(s) 51, 166, 302, 352, 432, 438, 633, 645
TaqI TCGA 6 cut(s) 383, 432, 474, 620, 707, 818
TasI AATT 2 cut(s) 30, 196
TatI WGTACW 1 cut(s) 64
TauI GCSGC 2 cut(s) 56, 59
TfiI GAWTC 4 cut(s) 10, 21, 396, 594
Tru1I TTAA 4 cut(s) 335, 732, 756, 795
Tru9I TTAA 4 cut(s) 335, 732, 756, 795
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 1 cut(s) 638
TspGWI ACGGA 1 cut(s) 238
Vha464I CTTAAG 1 cut(s) 794
XbaI TCTAGA 1 cut(s) 232
XceI RCATGY 1 cut(s) 673
XmiI GTMKAC 1 cut(s) 432
XspI CTAG 2 cut(s) 233, 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.