Rmu_sc0008804.1_g000004

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008804.1
OG0012095
Physical Location & Seq
Reverse (-)
10298 .. 11662
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008804.1_g000004.1.cds

Sequence Viewer

Length: 954 bp
atgggagcagataggattccggtgaggtttcagagagttgcggcggcgttcgacgagggggcgagagtaaggctgtgcgagagcagcggcagcgagcactcggcggccgcggagagccttgctgatttgtcggaccttgtcaagtcttttattgagcgagggaattatagaggggattcaagagatgatggtgaggaaatcgagagggattcgttggagatggatgaagaattagagggcggttattggtctgattcggagaccaagaataccctacaacagctgcttgatcaaaatggaggtggtgatgatgtgaaggaaaacattgttgctgaggtagaacatgcttgcggtgtaattggggataggttggacagagagtttaagaggaagctgatggctcatttgcgccacaagggctttgatgctggcctgtgcaaatcaaagtggataaaatccagtcggtttccagcaggggactacgaatttgttgatgtcaatgtcaacggaactcgttacattatcgagccattcttcaccggagaattcgaaatcgcccggcccactagtcgatacacatcgttacacaatgtcctgccacagatattcgtcggagaagttgaagagctgaagaaaattgttcggatcatgtgcacagccattaaaaagtccatgaagagagtggacatgcccatgccaccatggaggagaaatgggtacatgttagctaagtggtttggttcctacaagcgcaccacaaatgcagtttcttcaaccaaggccttcgaattcgatgagagtttaagcgcaaagagatcattcggcttcgaggctctgcccatgaagtcttactattgcagagacagttttgctaccaataatgtattgagaattgggaacttgactgctgcctttcagcccaaaggcattggcatggaaatgatggaattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

317

Amino Acids

35.89

Weight (kDa)

5.73

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 110
AciI CCGC 8 cut(s) 41, 44, 87, 104, 108, 110, 240, 351
AclWI GGATC 1 cut(s) 653
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 485, 545, 788
AcuI CTGAAG 1 cut(s) 650
AfaI GTAC 1 cut(s) 719
AflIII ACRYGT 1 cut(s) 720
AgsI TTSAA 3 cut(s) 180, 623, 774
AhlI ACTAGT 1 cut(s) 566
AluBI AGCT 4 cut(s) 283, 394, 628, 728
AluI AGCT 4 cut(s) 283, 394, 628, 728
Alw21I GWGCWC 2 cut(s) 99, 656
Alw26I GTCTC 2 cut(s) 254, 855
Alw44I GTGCAC 1 cut(s) 652
AlwI GGATC 1 cut(s) 653
AoxI GGCC 4 cut(s) 105, 430, 560, 780
ApaLI GTGCAC 1 cut(s) 652
ApeKI GCWGC 4 cut(s) 84, 90, 283, 908
ApoI RAATTY 3 cut(s) 485, 545, 788
ArsI GACNNNNNNTTYG 2 cut(s) 470, 502
AspLEI GCGC 3 cut(s) 411, 753, 809
AspS9I GGNCC 2 cut(s) 133, 561
AsuC2I CCSGG 1 cut(s) 559
AsuHPI GGTGA 4 cut(s) 34, 203, 317, 529
AsuII TTCGAA 2 cut(s) 549, 786
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 656
Bbv12I GWGCWC 2 cut(s) 99, 656
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 4 cut(s) 96, 102, 270, 895
BccI CCATC 4 cut(s) 182, 214, 391, 937
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 254, 855
BcuI ACTAGT 1 cut(s) 566
BfaI CTAG 1 cut(s) 567
BglI GCCNNNNNGGC 1 cut(s) 417
BisI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 909
BlsI GCNGC 9 cut(s) 43, 46, 86, 89, 92, 106, 109, 285, 910
Bme1390I CCNGG 1 cut(s) 559
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 561
BmiI GGNNCC 1 cut(s) 742
BmrFI CCNGG 1 cut(s) 559
BmsI GCATC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 333
Bpu14I TTCGAA 2 cut(s) 549, 786
BpuMI CCSGG 1 cut(s) 559
BsaBI GATNNNNATC 1 cut(s) 577
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 108, 701, 777
BsaWI WCCGGW 2 cut(s) 19, 539
Bse1I ACTGG 1 cut(s) 459
Bse8I GATNNNNATC 1 cut(s) 577
BseDI CCNNGG 3 cut(s) 108, 701, 777
BseGI GGATG 1 cut(s) 229
BseJI GATNNNNATC 1 cut(s) 577
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 459
BseRI GAGGAG 1 cut(s) 721
BseSI GKGCMC 1 cut(s) 656
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 4 cut(s) 96, 102, 270, 895
Bsh1236I CGCG 1 cut(s) 110
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 4 cut(s) 107, 432, 562, 782
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 2 cut(s) 99, 656
BsiSI CCGG 3 cut(s) 20, 540, 559
BslFI GGGAC 1 cut(s) 491
BsmAI GTCTC 2 cut(s) 254, 855
BsmFI GGGAC 1 cut(s) 491
BsnI GGCC 4 cut(s) 107, 432, 562, 782
Bso31I GGTCTC 1 cut(s) 254
Bsp119I TTCGAA 2 cut(s) 549, 786
Bsp1286I GDGCHC 2 cut(s) 99, 656
Bsp143I GATC 3 cut(s) 289, 645, 815
Bsp19I CCATGG 1 cut(s) 701
BspACI CCGC 8 cut(s) 41, 44, 87, 104, 108, 110, 240, 351
BspANI GGCC 4 cut(s) 107, 432, 562, 782
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 742
BspPI GGATC 1 cut(s) 653
BspQI GCTCTTC 1 cut(s) 618
BspT104I TTCGAA 2 cut(s) 549, 786
BspTNI GGTCTC 1 cut(s) 254
BsrI ACTGG 1 cut(s) 459
BssECI CCNNGG 3 cut(s) 108, 701, 777
BssMI GATC 3 cut(s) 289, 645, 815
BssT1I CCWWGG 2 cut(s) 701, 777
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 2 cut(s) 618, 671
BstBI TTCGAA 2 cut(s) 549, 786
BstC8I GCNNGC 3 cut(s) 95, 349, 430
BstDEI CTNAG 2 cut(s) 333, 729
BstDSI CCRYGG 2 cut(s) 108, 701
BstF5I GGATG 1 cut(s) 229
BstFNI CGCG 1 cut(s) 110
BstHHI GCGC 3 cut(s) 411, 753, 809
BstKTI GATC 3 cut(s) 292, 648, 818
BstMAI GTCTC 2 cut(s) 254, 855
BstMBI GATC 3 cut(s) 289, 645, 815
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 3 cut(s) 84, 90, 417
BstNSI RCATGY 3 cut(s) 347, 691, 724
BstSCI CCNGG 1 cut(s) 557
BstSLI GKGCMC 1 cut(s) 656
BstUI CGCG 1 cut(s) 110
BstV1I GCAGC 4 cut(s) 96, 102, 270, 895
BstZI CGGCCG 1 cut(s) 105
BsuRI GGCC 4 cut(s) 107, 432, 562, 782
BtgI CCRYGG 2 cut(s) 108, 701
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 3 cut(s) 95, 349, 430
CciNI GCGGCCGC 1 cut(s) 105
CfoI GCGC 3 cut(s) 411, 753, 809
Cfr13I GGNCC 2 cut(s) 133, 561
Cfr42I CCGCGG 1 cut(s) 111
Csp6I GTAC 1 cut(s) 718
CviAII CATG 9 cut(s) 344, 649, 673, 688, 694, 702, 721, 841, 934
CviQI GTAC 1 cut(s) 718
DdeI CTNAG 2 cut(s) 333, 729
DpnI GATC 3 cut(s) 291, 647, 817
DpnII GATC 3 cut(s) 289, 645, 815
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 2 cut(s) 618, 671
EarI CTCTTC 2 cut(s) 618, 671
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 2 cut(s) 701, 777
Eco147I AGGCCT 1 cut(s) 782
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 105
Eco57I CTGAAG 1 cut(s) 650
EcoRI GAATTC 2 cut(s) 545, 788
EcoT14I CCWWGG 2 cut(s) 701, 777
ErhI CCWWGG 2 cut(s) 701, 777
FaeI CATG 9 cut(s) 347, 652, 676, 691, 697, 705, 724, 844, 937
FaqI GGGAC 1 cut(s) 491
FatI CATG 9 cut(s) 343, 648, 672, 687, 693, 701, 720, 840, 933
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 909
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 909
FspBI CTAG 1 cut(s) 567
GlaI GCGC 3 cut(s) 410, 752, 808
GluI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 909
HaeIII GGCC 4 cut(s) 107, 432, 562, 782
HapII CCGG 3 cut(s) 20, 540, 559
HhaI GCGC 3 cut(s) 411, 753, 809
Hin1II CATG 9 cut(s) 347, 652, 676, 691, 697, 705, 724, 844, 937
Hin6I GCGC 3 cut(s) 409, 751, 807
HinP1I GCGC 3 cut(s) 409, 751, 807
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HinfI GANTC 4 cut(s) 16, 176, 209, 254
HpaII CCGG 3 cut(s) 20, 540, 559
HphI GGTGA 4 cut(s) 34, 203, 317, 529
Hpy166II GTNNAC 3 cut(s) 505, 654, 685
Hpy188I TCNGA 6 cut(s) 33, 133, 253, 259, 614, 645
Hpy188III TCNNGA 2 cut(s) 180, 202
Hpy8I GTNNAC 3 cut(s) 505, 654, 685
Hpy99I CGWCG 2 cut(s) 56, 614
HpyAV CCTTC 2 cut(s) 310, 793
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4V TGCA 4 cut(s) 438, 654, 764, 858
HpyF10VI GCNNNNNNNGC 3 cut(s) 84, 90, 417
HpyF3I CTNAG 2 cut(s) 333, 729
Hsp92II CATG 9 cut(s) 347, 652, 676, 691, 697, 705, 724, 844, 937
HspAI GCGC 3 cut(s) 409, 751, 807
Ksp22I TGATCA 1 cut(s) 289
KspI CCGCGG 1 cut(s) 111
Kzo9I GATC 3 cut(s) 289, 645, 815
LguI GCTCTTC 1 cut(s) 618
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 9 cut(s) 33, 414, 446, 459, 472, 483, 553, 572, 608
Lsp1109I GCAGC 4 cut(s) 96, 102, 270, 895
LweI GCATC 1 cut(s) 415
MaeI CTAG 1 cut(s) 567
MaeIII GTNAC 2 cut(s) 515, 582
MalI GATC 3 cut(s) 291, 647, 817
MboI GATC 3 cut(s) 289, 645, 815
MboII GAAGA 6 cut(s) 239, 526, 635, 643, 688, 762
MhlI GDGCHC 2 cut(s) 99, 656
MluCI AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 788, 891, 947
MmeI TCCRAC 4 cut(s) 111, 195, 351, 592
MseI TTAA 3 cut(s) 384, 663, 803
MslI CAYNNNNRTG 3 cut(s) 692, 932, 938
MspA1I CMGCKG 3 cut(s) 87, 110, 283
MspI CCGG 3 cut(s) 20, 540, 559
MspR9I CCNGG 1 cut(s) 559
MvnI CGCG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 84, 90, 417
NciI CCSGG 1 cut(s) 559
NcoI CCATGG 1 cut(s) 701
NdeII GATC 3 cut(s) 289, 645, 815
NlaIII CATG 9 cut(s) 347, 652, 676, 691, 697, 705, 724, 844, 937
NlaIV GGNNCC 1 cut(s) 742
NmeAIII GCCGAG 1 cut(s) 80
NotI GCGGCCGC 1 cut(s) 105
NspI RCATGY 3 cut(s) 347, 691, 724
NspV TTCGAA 2 cut(s) 549, 786
PceI AGGCCT 1 cut(s) 782
PciI ACATGT 1 cut(s) 720
PciSI GCTCTTC 1 cut(s) 618
PfeI GAWTC 4 cut(s) 16, 176, 209, 254
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 9 cut(s) 43, 46, 86, 89, 92, 106, 109, 285, 910
PscI ACATGT 1 cut(s) 720
PspN4I GGNNCC 1 cut(s) 742
PspPI GGNCC 2 cut(s) 133, 561
PsyI GACNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 283
RsaI GTAC 1 cut(s) 719
RsaNI GTAC 1 cut(s) 718
RseI CAYNNNNRTG 3 cut(s) 692, 932, 938
SacII CCGCGG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 618
SaqAI TTAA 3 cut(s) 384, 663, 803
SatI GCNGC 9 cut(s) 42, 45, 85, 88, 91, 105, 108, 284, 909
Sau3AI GATC 3 cut(s) 289, 645, 815
Sau96I GGNCC 2 cut(s) 133, 561
ScrFI CCNGG 1 cut(s) 559
SduI GDGCHC 2 cut(s) 99, 656
SetI ASST 9 cut(s) 29, 138, 285, 304, 339, 371, 396, 630, 730
SfaNI GCATC 1 cut(s) 415
Sfr303I CCGCGG 1 cut(s) 111
SfuI TTCGAA 2 cut(s) 549, 786
SgrBI CCGCGG 1 cut(s) 111
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 3 cut(s) 692, 932, 938
SpeI ACTAGT 1 cut(s) 566
Sse9I AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 788, 891, 947
SseBI AGGCCT 1 cut(s) 782
SsiI CCGC 8 cut(s) 41, 44, 87, 104, 108, 110, 240, 351
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 782
StyD4I CCNGG 1 cut(s) 557
StyI CCWWGG 2 cut(s) 701, 777
TaaI ACNGT 1 cut(s) 866
TaqI TCGA 8 cut(s) 51, 201, 525, 549, 571, 786, 792, 828
TasI AATT 9 cut(s) 163, 230, 357, 485, 545, 636, 788, 891, 947
TauI GCSGC 5 cut(s) 44, 47, 90, 107, 110
TfiI GAWTC 4 cut(s) 16, 176, 209, 254
Tru1I TTAA 3 cut(s) 384, 663, 803
Tru9I TTAA 3 cut(s) 384, 663, 803
TseI GCWGC 4 cut(s) 84, 90, 283, 908
TspDTI ATGAA 3 cut(s) 240, 689, 857
TspGWI ACGGA 1 cut(s) 522
Tth111I GACNNNGTC 1 cut(s) 137
VneI GTGCAC 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 3 cut(s) 485, 545, 788
XceI RCATGY 3 cut(s) 347, 691, 724
XcmI CCANNNNNNNNNTGG 1 cut(s) 679
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.