Rroxscaffold_1G00074690

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012095
Physical Location & Seq
Reverse (-)
95583455 .. 95585696
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00074690.1

Sequence Viewer

Length: 957 bp
ATGAAAAACATGGGAGCAGATAGGATTCCAGTGAGGTTTCAGAGAGTTGCGGCGGCGTTCGACGAGGGGGCGAGGGTAAGGCTGTGCGAGAGCAGCGGCAGCGAGCACTCGGCGGCGGCGGAGAGCGTTGCTGATTTGTCGGACCTTGTCAAGTCTTTTATTGAGCGAGGGAATTATAGAGGGGATCCAAGAGATGATGGTGAGGAAATCGAGAGGGATTCGTTGGAGATGGATGAAGAATTAGAGGGCGGTTATTGGTCTGATTCGGAGACCAAGAATACCCTACAACAGCTGCTTGATAAAAATGGAGGTGGTGATGATGTGAAGGAAAACATTGTTGCTGAGGTAGAACATGCTTGCGGTGTAATTGGGGATAGGTTGGACAGAGAGTTTAAGAGGAAGCTGATGACTCATTTGCGCCACAAGGGTTTTGATGCTGGCCTGTGCAAATCAAAGTGGGTAAAATCCAGTCAGTTTCCAGCAGGGGACTACGAATTTGTTGATGTCAATGTCAACGGAACTCGTTACATTGTCGAGCCATTCTTCACCGGAGAATTTGAAATCGCCCGTCCCACCAGTCGATACACATCGTTACACAATGTCCTGCCACAGATATTCGTCGGAGAAGTTGAAGAGCTGAAGAAAATTGTTCGGATCATGTGCACAGCCATTAAAAAGTCCATGAAGAGAGTGGACATGCCAATGCCACCATGGAGGAGAAATGGGTACATGTTAGCAAAGTGGTTTGGTTCCTACAAGCGCACCACAAATGCAGTTTCTTCTTCAACCAAGGCCTTCGAATTCGATGAGAGTTTAAGCGCAAATAGATCATTCGGCTTCGAGGTTCTGCCCAGGAAGTCTTACTATTGCAGAGACAGTTTTGCTACCAATAATGGATTGAGAATTGGGAACTTGACCGCTGCCTTTCAGCCCAAAGGCATTGGCATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

318

Amino Acids

35.92

Weight (kDa)

6.07

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 254 4.6e-61 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 9 cut(s) 50, 53, 96, 113, 116, 119, 249, 360, 918
AclWI GGATC 3 cut(s) 179, 192, 662
AcsI RAATTY 3 cut(s) 494, 554, 800
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 3 cut(s) 560, 632, 786
AjnI CCWGG 1 cut(s) 851
AluBI AGCT 3 cut(s) 292, 403, 637
AluI AGCT 3 cut(s) 292, 403, 637
Alw21I GWGCWC 2 cut(s) 108, 665
Alw26I GTCTC 2 cut(s) 263, 867
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 3 cut(s) 179, 192, 662
AoxI GGCC 2 cut(s) 439, 792
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 4 cut(s) 93, 99, 292, 920
ApoI RAATTY 3 cut(s) 494, 554, 800
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspLEI GCGC 3 cut(s) 420, 762, 821
AspS9I GGNCC 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 212, 326, 538
AsuII TTCGAA 1 cut(s) 798
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 665
BamHI GGATCC 1 cut(s) 184
Bbv12I GWGCWC 2 cut(s) 108, 665
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 4 cut(s) 105, 111, 279, 907
BccI CCATC 2 cut(s) 191, 223
BciT130I CCWGG 1 cut(s) 853
BcoDI GTCTC 2 cut(s) 263, 867
BisI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
BlsI GCNGC 9 cut(s) 52, 55, 95, 98, 101, 115, 118, 294, 922
Bme1390I CCNGG 1 cut(s) 853
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
BmiI GGNNCC 2 cut(s) 186, 751
BmrFI CCNGG 1 cut(s) 853
BmsI GCATC 1 cut(s) 424
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 1 cut(s) 798
BsaBI GATNNNNATC 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 710, 789, 851
BsaWI WCCGGW 1 cut(s) 548
Bse1I ACTGG 3 cut(s) 29, 468, 576
Bse8I GATNNNNATC 1 cut(s) 586
BseBI CCWGG 1 cut(s) 853
BseDI CCNNGG 3 cut(s) 710, 789, 851
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 586
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 3 cut(s) 29, 468, 576
BseRI GAGGAG 1 cut(s) 730
BseSI GKGCMC 1 cut(s) 665
BseXI GCAGC 4 cut(s) 105, 111, 279, 907
BshFI GGCC 2 cut(s) 441, 794
BsiHKAI GWGCWC 2 cut(s) 108, 665
BsiSI CCGG 1 cut(s) 549
BslFI GGGAC 2 cut(s) 500, 555
BsmAI GTCTC 2 cut(s) 263, 867
BsmFI GGGAC 2 cut(s) 500, 555
BsnI GGCC 2 cut(s) 441, 794
Bso31I GGTCTC 1 cut(s) 263
Bsp119I TTCGAA 1 cut(s) 798
Bsp1286I GDGCHC 2 cut(s) 108, 665
Bsp143I GATC 3 cut(s) 184, 654, 827
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 9 cut(s) 50, 53, 96, 113, 116, 119, 249, 360, 918
BspANI GGCC 2 cut(s) 441, 794
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 186, 751
BspPI GGATC 3 cut(s) 179, 192, 662
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 1 cut(s) 798
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 3 cut(s) 29, 468, 576
BssECI CCNNGG 3 cut(s) 710, 789, 851
BssMI GATC 3 cut(s) 184, 654, 827
BssT1I CCWWGG 2 cut(s) 710, 789
Bst2UI CCWGG 1 cut(s) 853
Bst4CI ACNGT 1 cut(s) 878
Bst6I CTCTTC 2 cut(s) 627, 680
BstBI TTCGAA 1 cut(s) 798
BstC8I GCNNGC 3 cut(s) 104, 358, 439
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 1 cut(s) 238
BstHHI GCGC 3 cut(s) 420, 762, 821
BstKTI GATC 3 cut(s) 187, 657, 830
BstMAI GTCTC 2 cut(s) 263, 867
BstMBI GATC 3 cut(s) 184, 654, 827
BstMWI GCNNNNNNNGC 2 cut(s) 93, 99
BstNI CCWGG 1 cut(s) 853
BstNSI RCATGY 3 cut(s) 356, 700, 733
BstSCI CCNGG 1 cut(s) 851
BstSLI GKGCMC 1 cut(s) 665
BstV1I GCAGC 4 cut(s) 105, 111, 279, 907
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuRI GGCC 2 cut(s) 441, 794
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 1 cut(s) 238
BtsIMutI CAGTG 1 cut(s) 36
Cac8I GCNNGC 3 cut(s) 104, 358, 439
CfoI GCGC 3 cut(s) 420, 762, 821
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 727
CviAII CATG 8 cut(s) 10, 353, 658, 682, 697, 711, 730, 946
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 1 cut(s) 342
DpnI GATC 3 cut(s) 186, 656, 829
DpnII GATC 3 cut(s) 184, 654, 827
Eam1104I CTCTTC 2 cut(s) 627, 680
EarI CTCTTC 2 cut(s) 627, 680
EciI GGCGGA 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 710, 789
Eco147I AGGCCT 1 cut(s) 794
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 142
Eco57I CTGAAG 1 cut(s) 659
EcoRI GAATTC 1 cut(s) 800
EcoRII CCWGG 1 cut(s) 851
EcoT14I CCWWGG 2 cut(s) 710, 789
ErhI CCWWGG 2 cut(s) 710, 789
FaeI CATG 8 cut(s) 13, 356, 661, 685, 700, 714, 733, 949
FaqI GGGAC 2 cut(s) 500, 555
FatI CATG 8 cut(s) 9, 352, 657, 681, 696, 710, 729, 945
Fnu4HI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
GlaI GCGC 3 cut(s) 419, 761, 820
GluI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
HaeIII GGCC 2 cut(s) 441, 794
HapII CCGG 1 cut(s) 549
HhaI GCGC 3 cut(s) 420, 762, 821
Hin1II CATG 8 cut(s) 13, 356, 661, 685, 700, 714, 733, 949
Hin6I GCGC 3 cut(s) 418, 760, 819
HinP1I GCGC 3 cut(s) 418, 760, 819
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 4 cut(s) 25, 218, 263, 409
HpaII CCGG 1 cut(s) 549
HphI GGTGA 3 cut(s) 212, 326, 538
Hpy166II GTNNAC 3 cut(s) 514, 663, 694
Hpy188I TCNGA 6 cut(s) 42, 142, 262, 268, 623, 654
Hpy188III TCNNGA 1 cut(s) 211
Hpy8I GTNNAC 3 cut(s) 514, 663, 694
Hpy99I CGWCG 2 cut(s) 65, 623
HpyAV CCTTC 2 cut(s) 319, 805
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4V TGCA 4 cut(s) 447, 663, 773, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 99
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 8 cut(s) 13, 356, 661, 685, 700, 714, 733, 949
HspAI GCGC 3 cut(s) 418, 760, 819
Kzo9I GATC 3 cut(s) 184, 654, 827
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 14
Lsp1109I GCAGC 4 cut(s) 105, 111, 279, 907
LweI GCATC 1 cut(s) 424
MaeIII GTNAC 2 cut(s) 524, 591
MalI GATC 3 cut(s) 186, 656, 829
MboI GATC 3 cut(s) 184, 654, 827
MboII GAAGA 7 cut(s) 248, 535, 644, 652, 697, 771, 774
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 108, 665
MluCI AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 950
MlyI GAGTC 1 cut(s) 403
MmeI TCCRAC 4 cut(s) 120, 204, 360, 601
MseI TTAA 3 cut(s) 393, 672, 815
MslI CAYNNNNRTG 2 cut(s) 701, 944
MspA1I CMGCKG 3 cut(s) 96, 292, 920
MspI CCGG 1 cut(s) 549
MspR9I CCNGG 1 cut(s) 853
MvaI CCWGG 1 cut(s) 853
MwoI GCNNNNNNNGC 2 cut(s) 93, 99
NcoI CCATGG 1 cut(s) 710
NdeII GATC 3 cut(s) 184, 654, 827
NlaIII CATG 8 cut(s) 13, 356, 661, 685, 700, 714, 733, 949
NlaIV GGNNCC 2 cut(s) 186, 751
NmeAIII GCCGAG 1 cut(s) 89
NspI RCATGY 3 cut(s) 356, 700, 733
NspV TTCGAA 1 cut(s) 798
PceI AGGCCT 1 cut(s) 794
PciI ACATGT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 627
PfeI GAWTC 3 cut(s) 25, 218, 263
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 9 cut(s) 52, 55, 95, 98, 101, 115, 118, 294, 922
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 729
Psp6I CCWGG 1 cut(s) 851
PspGI CCWGG 1 cut(s) 851
PspN4I GGNNCC 2 cut(s) 186, 751
PspPI GGNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 184
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
RseI CAYNNNNRTG 2 cut(s) 701, 944
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 3 cut(s) 393, 672, 815
SatI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
Sau3AI GATC 3 cut(s) 184, 654, 827
Sau96I GGNCC 1 cut(s) 142
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 853
SduI GDGCHC 2 cut(s) 108, 665
SetI ASST 9 cut(s) 38, 147, 294, 313, 348, 380, 405, 639, 846
SfaNI GCATC 1 cut(s) 424
SfuI TTCGAA 1 cut(s) 798
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 2 cut(s) 701, 944
Sse9I AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 950
SseBI AGGCCT 1 cut(s) 794
SsiI CCGC 9 cut(s) 50, 53, 96, 113, 116, 119, 249, 360, 918
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 851
StyI CCWWGG 2 cut(s) 710, 789
TaaI ACNGT 1 cut(s) 878
TaqI TCGA 7 cut(s) 60, 210, 534, 580, 798, 804, 840
TasI AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 950
TauI GCSGC 5 cut(s) 53, 56, 99, 116, 119
TfiI GAWTC 3 cut(s) 25, 218, 263
Tru1I TTAA 3 cut(s) 393, 672, 815
Tru9I TTAA 3 cut(s) 393, 672, 815
TscAI CASTG 1 cut(s) 36
TseI GCWGC 4 cut(s) 93, 99, 292, 920
TspDTI ATGAA 3 cut(s) 17, 249, 698
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 1 cut(s) 36
Tth111I GACNNNGTC 1 cut(s) 146
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 3 cut(s) 494, 554, 800
XceI RCATGY 3 cut(s) 356, 700, 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 688, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.