Rw5G001240

PDDEXK-like family of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012095
Physical Location & Seq
Forward (+)
999930 .. 1001593
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001240.1

Sequence Viewer

Length: 966 bp
ATGAAAAACATGGGAGCAGATAGGATTCCGGTGAGGTTTCAGAGAGTTGCGGCGGCGTTCGACGAGGGGGCGAGGGTAAGGACGTGCGAGAGCAGCGGCAGCGAGCACTCGGCGGCCGCGGAGAGCCTTGCTGATTTGTCGGACCTTGTCAAGTCTTTTATTGAGCGAGGGAATTATAGAGGGGATTCAAGAGATGATGGTGAGGAAATCGAGAGGGATTCGTTGGAGATGGATGAAGAATTAGAGGGCGGTTATTGGTCTGATTCGGAGACCAAGAATACCCTACAACAGCTGCTTGATCAAAATGGAGGTGGTGATGATGTGAAGGAAAACATTGTTGCTGAGGTAGAACATGCTTGCGGTGTAATTGGGGATAGGTTGGACAGAGAGTTTAAGAGGAAGCTGATGGCTCATTTGCGCCACAAGGGTTTTGATGCTGGCCTATGCAAATCAAAGTGGGTAAAATCCAGTCGGTTTCCAGCAGGGGACTACGAATTTGTTGATGTCAATGTCAACGGAACTCGTTACATTATCGAGCCATTCTTCACCGGAGAATTCGAAATCGCCCGGCCCACTAGTCGATACACATCGTTACACAATGTCCTGCCACAGATATTCGTCGGAGAAGTTGAAGAGCTGAAGAAAATTGTTCGGATCATGTGCACAGCCATTAAAAAGTCCATGAACAGAGTGGACATGCCCATGCCACCATGGAGGAGAAATGGGTACATGTTAGCTAAGTGGTTTGGTTCCTACAAGCGCACCACAAATGCAGTTTCTTCTTCAACCAAGGCCTTCGAATTCGATGAGAGTTTAAGCGCAAAGAGATCATTCGGCTTCGAGGCTCTGCCCATGAAGTCTTACTATTGCAGAGACAGTTTTGCTACCAATAATGTATTGAGAATTGGGAACTTGACTGCTGCCTTTCAGCCCAAAGGCATTGGCATGGAAATGATGGAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PDDEXK_6

Protein Analysis

321

Amino Acids

36.31

Weight (kDa)

5.73

Isoelectric Point (pI)

41.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDDEXK_6 PF04720 47 - 254 2.7e-60 PDDEXK-like family of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12030 AT1G62420
fragaria_vesca FvH4_3g01080
malus_domestica MD05G1356900.v1.1 MD10G1330600.v1.1
prunus_persica Prupe.4G011900_v2.0.a1
pyrus_communis pycom10g27990 pycom10g28000
rosa_chinensis RchiOBHm_Chr5g0001631
rosa_laevigata RLG00000030951
rosa_multiflora Rmu_sc0006320.1_g000001 Rmu_sc0008804.1_g000004
rosa_roxburghii Rroxscaffold_1G00074690
rosa_rugosa Rorug04G0391500.1
rosa_samantha Rh5AG013000 Rh5BG016300 Rh5CG014000 Rh5DG014000
rosa_wichuraiana Rw5G001240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AciI CCGC 8 cut(s) 50, 53, 96, 113, 117, 119, 249, 360
AclWI GGATC 1 cut(s) 662
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 3 cut(s) 494, 554, 800
AcuI CTGAAG 1 cut(s) 659
AfaI GTAC 1 cut(s) 728
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 3 cut(s) 189, 632, 786
AhlI ACTAGT 1 cut(s) 575
AjiI CACGTC 1 cut(s) 84
AluBI AGCT 4 cut(s) 292, 403, 637, 737
AluI AGCT 4 cut(s) 292, 403, 637, 737
Alw21I GWGCWC 2 cut(s) 108, 665
Alw26I GTCTC 2 cut(s) 263, 867
Alw44I GTGCAC 1 cut(s) 661
AlwI GGATC 1 cut(s) 662
AoxI GGCC 4 cut(s) 114, 439, 569, 792
ApaLI GTGCAC 1 cut(s) 661
ApeKI GCWGC 4 cut(s) 93, 99, 292, 920
ApoI RAATTY 3 cut(s) 494, 554, 800
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspLEI GCGC 3 cut(s) 420, 762, 821
AspS9I GGNCC 2 cut(s) 142, 570
AsuC2I CCSGG 1 cut(s) 568
AsuHPI GGTGA 4 cut(s) 43, 212, 326, 538
AsuII TTCGAA 2 cut(s) 558, 798
AvaII GGWCC 1 cut(s) 142
BaeGI GKGCMC 1 cut(s) 665
Bbv12I GWGCWC 2 cut(s) 108, 665
BbvCI CCTCAGC 1 cut(s) 342
BbvI GCAGC 4 cut(s) 105, 111, 279, 907
BccI CCATC 4 cut(s) 191, 223, 400, 949
BclI TGATCA 1 cut(s) 298
BcnI CCSGG 1 cut(s) 568
BcoDI GTCTC 2 cut(s) 263, 867
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 1 cut(s) 576
BisI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
BlsI GCNGC 9 cut(s) 52, 55, 95, 98, 101, 115, 118, 294, 922
Bme1390I CCNGG 1 cut(s) 568
Bme18I GGWCC 1 cut(s) 142
BmgBI CACGTC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 142, 570
BmiI GGNNCC 1 cut(s) 751
BmrFI CCNGG 1 cut(s) 568
BmsI GCATC 1 cut(s) 424
Bpu10I CCTNAGC 1 cut(s) 342
Bpu14I TTCGAA 2 cut(s) 558, 798
BpuMI CCSGG 1 cut(s) 568
BsaBI GATNNNNATC 1 cut(s) 586
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 3 cut(s) 117, 710, 789
BsaWI WCCGGW 2 cut(s) 28, 548
Bse1I ACTGG 1 cut(s) 468
Bse8I GATNNNNATC 1 cut(s) 586
BseDI CCNNGG 3 cut(s) 117, 710, 789
BseGI GGATG 1 cut(s) 238
BseJI GATNNNNATC 1 cut(s) 586
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 468
BseRI GAGGAG 1 cut(s) 730
BseSI GKGCMC 1 cut(s) 665
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 4 cut(s) 105, 111, 279, 907
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 4 cut(s) 116, 441, 571, 794
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 108, 665
BsiSI CCGG 3 cut(s) 29, 549, 568
BslFI GGGAC 1 cut(s) 500
BsmAI GTCTC 2 cut(s) 263, 867
BsmFI GGGAC 1 cut(s) 500
BsnI GGCC 4 cut(s) 116, 441, 571, 794
Bso31I GGTCTC 1 cut(s) 263
Bsp119I TTCGAA 2 cut(s) 558, 798
Bsp1286I GDGCHC 2 cut(s) 108, 665
Bsp143I GATC 3 cut(s) 298, 654, 827
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 8 cut(s) 50, 53, 96, 113, 117, 119, 249, 360
BspANI GGCC 4 cut(s) 116, 441, 571, 794
BspCNI CTCAG 1 cut(s) 334
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 751
BspPI GGATC 1 cut(s) 662
BspQI GCTCTTC 1 cut(s) 627
BspT104I TTCGAA 2 cut(s) 558, 798
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 468
BssECI CCNNGG 3 cut(s) 117, 710, 789
BssMI GATC 3 cut(s) 298, 654, 827
BssT1I CCWWGG 2 cut(s) 710, 789
Bst4CI ACNGT 1 cut(s) 878
Bst6I CTCTTC 1 cut(s) 627
BstBI TTCGAA 2 cut(s) 558, 798
BstC8I GCNNGC 3 cut(s) 104, 358, 439
BstDEI CTNAG 2 cut(s) 342, 738
BstDSI CCRYGG 2 cut(s) 117, 710
BstF5I GGATG 1 cut(s) 238
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 3 cut(s) 420, 762, 821
BstKTI GATC 3 cut(s) 301, 657, 830
BstMAI GTCTC 2 cut(s) 263, 867
BstMBI GATC 3 cut(s) 298, 654, 827
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 93, 99
BstNSI RCATGY 3 cut(s) 356, 700, 733
BstSCI CCNGG 1 cut(s) 566
BstSLI GKGCMC 1 cut(s) 665
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 4 cut(s) 105, 111, 279, 907
BstZI CGGCCG 1 cut(s) 114
BsuRI GGCC 4 cut(s) 116, 441, 571, 794
BtgI CCRYGG 2 cut(s) 117, 710
BtrI CACGTC 1 cut(s) 84
BtsCI GGATG 1 cut(s) 238
Cac8I GCNNGC 3 cut(s) 104, 358, 439
CciNI GCGGCCGC 1 cut(s) 114
CfoI GCGC 3 cut(s) 420, 762, 821
Cfr13I GGNCC 2 cut(s) 142, 570
Cfr42I CCGCGG 1 cut(s) 120
Csp6I GTAC 1 cut(s) 727
CviQI GTAC 1 cut(s) 727
DdeI CTNAG 2 cut(s) 342, 738
DpnI GATC 3 cut(s) 300, 656, 829
DpnII GATC 3 cut(s) 298, 654, 827
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
Eam1104I CTCTTC 1 cut(s) 627
EarI CTCTTC 1 cut(s) 627
EclXI CGGCCG 1 cut(s) 114
Eco130I CCWWGG 2 cut(s) 710, 789
Eco147I AGGCCT 1 cut(s) 794
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 142
Eco52I CGGCCG 1 cut(s) 114
Eco57I CTGAAG 1 cut(s) 659
EcoRI GAATTC 2 cut(s) 554, 800
EcoT14I CCWWGG 2 cut(s) 710, 789
ErhI CCWWGG 2 cut(s) 710, 789
FaqI GGGAC 1 cut(s) 500
FbaI TGATCA 1 cut(s) 298
Fnu4HI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
FokI GGATG 1 cut(s) 245
Fsp4HI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
FspBI CTAG 1 cut(s) 576
GlaI GCGC 3 cut(s) 419, 761, 820
GluI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
HaeIII GGCC 4 cut(s) 116, 441, 571, 794
HapII CCGG 3 cut(s) 29, 549, 568
HhaI GCGC 3 cut(s) 420, 762, 821
Hin6I GCGC 3 cut(s) 418, 760, 819
HinP1I GCGC 3 cut(s) 418, 760, 819
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HinfI GANTC 4 cut(s) 25, 185, 218, 263
HpaII CCGG 3 cut(s) 29, 549, 568
HphI GGTGA 4 cut(s) 43, 212, 326, 538
Hpy166II GTNNAC 3 cut(s) 514, 663, 694
Hpy188I TCNGA 6 cut(s) 42, 142, 262, 268, 623, 654
Hpy188III TCNNGA 2 cut(s) 189, 211
Hpy8I GTNNAC 3 cut(s) 514, 663, 694
Hpy99I CGWCG 2 cut(s) 65, 623
HpyAV CCTTC 2 cut(s) 319, 805
HpyCH4III ACNGT 1 cut(s) 878
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 4 cut(s) 447, 663, 773, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 99
HpyF3I CTNAG 2 cut(s) 342, 738
HpySE526I ACGT 1 cut(s) 83
HspAI GCGC 3 cut(s) 418, 760, 819
Ksp22I TGATCA 1 cut(s) 298
KspI CCGCGG 1 cut(s) 120
Kzo9I GATC 3 cut(s) 298, 654, 827
LguI GCTCTTC 1 cut(s) 627
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 42, 423, 468, 481, 492, 562, 581, 617
Lsp1109I GCAGC 4 cut(s) 105, 111, 279, 907
LweI GCATC 1 cut(s) 424
MaeI CTAG 1 cut(s) 576
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 2 cut(s) 524, 591
MalI GATC 3 cut(s) 300, 656, 829
MboI GATC 3 cut(s) 298, 654, 827
MboII GAAGA 6 cut(s) 248, 535, 644, 652, 771, 774
MhlI GDGCHC 2 cut(s) 108, 665
MluCI AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 959
MmeI TCCRAC 4 cut(s) 120, 204, 360, 601
MseI TTAA 3 cut(s) 393, 672, 815
MslI CAYNNNNRTG 3 cut(s) 701, 944, 950
MspA1I CMGCKG 3 cut(s) 96, 119, 292
MspI CCGG 3 cut(s) 29, 549, 568
MspR9I CCNGG 1 cut(s) 568
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 2 cut(s) 93, 99
NciI CCSGG 1 cut(s) 568
NcoI CCATGG 1 cut(s) 710
NdeII GATC 3 cut(s) 298, 654, 827
NlaIV GGNNCC 1 cut(s) 751
NmeAIII GCCGAG 1 cut(s) 89
NotI GCGGCCGC 1 cut(s) 114
NspI RCATGY 3 cut(s) 356, 700, 733
NspV TTCGAA 2 cut(s) 558, 798
PceI AGGCCT 1 cut(s) 794
PciI ACATGT 1 cut(s) 729
PciSI GCTCTTC 1 cut(s) 627
PfeI GAWTC 4 cut(s) 25, 185, 218, 263
PflFI GACNNNGTC 1 cut(s) 146
PkrI GCNGC 9 cut(s) 52, 55, 95, 98, 101, 115, 118, 294, 922
PscI ACATGT 1 cut(s) 729
PspN4I GGNNCC 1 cut(s) 751
PspPI GGNCC 2 cut(s) 142, 570
PsyI GACNNNGTC 1 cut(s) 146
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 728
RsaNI GTAC 1 cut(s) 727
RseI CAYNNNNRTG 3 cut(s) 701, 944, 950
SacII CCGCGG 1 cut(s) 120
SapI GCTCTTC 1 cut(s) 627
SaqAI TTAA 3 cut(s) 393, 672, 815
SatI GCNGC 9 cut(s) 51, 54, 94, 97, 100, 114, 117, 293, 921
Sau3AI GATC 3 cut(s) 298, 654, 827
Sau96I GGNCC 2 cut(s) 142, 570
ScrFI CCNGG 1 cut(s) 568
SduI GDGCHC 2 cut(s) 108, 665
SfaNI GCATC 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 120
SfuI TTCGAA 2 cut(s) 558, 798
SgrBI CCGCGG 1 cut(s) 120
SinI GGWCC 1 cut(s) 142
SmiMI CAYNNNNRTG 3 cut(s) 701, 944, 950
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 959
SseBI AGGCCT 1 cut(s) 794
SsiI CCGC 8 cut(s) 50, 53, 96, 113, 117, 119, 249, 360
SspMI CTAG 1 cut(s) 576
StuI AGGCCT 1 cut(s) 794
StyD4I CCNGG 1 cut(s) 566
StyI CCWWGG 2 cut(s) 710, 789
TaaI ACNGT 1 cut(s) 878
TaiI ACGT 1 cut(s) 86
TaqI TCGA 8 cut(s) 60, 210, 534, 558, 580, 798, 804, 840
TasI AATT 9 cut(s) 172, 239, 366, 494, 554, 645, 800, 903, 959
TauI GCSGC 5 cut(s) 53, 56, 99, 116, 119
TfiI GAWTC 4 cut(s) 25, 185, 218, 263
Tru1I TTAA 3 cut(s) 393, 672, 815
Tru9I TTAA 3 cut(s) 393, 672, 815
TseI GCWGC 4 cut(s) 93, 99, 292, 920
TspDTI ATGAA 4 cut(s) 17, 249, 698, 869
TspGWI ACGGA 1 cut(s) 531
Tth111I GACNNNGTC 1 cut(s) 146
VneI GTGCAC 1 cut(s) 661
VpaK11BI GGWCC 1 cut(s) 142
XapI RAATTY 3 cut(s) 494, 554, 800
XceI RCATGY 3 cut(s) 356, 700, 733
XcmI CCANNNNNNNNNTGG 1 cut(s) 688
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.