Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Forward (+)

4159227 .. 4161506

Gene Structure 2280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G12250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCTTTCTCTTCTCTATCTCCTCTACCTATGAAGTCACTTGACATTTCGAGATCCTCATCTTCTGTCTCAAGATCTCCTTACCATTTTCAGAGATACCTATTGAGACGTCTACAGCTAAGTTCCCGTTCAAACTTAGAAATCAAAGATTCATCAAACACTAGGGAAGGTTGTTGTTCCAGCGCTGAGTCAAATACATGGAAGAGGATTTTGTCTGCAGCAATGGCGGCGGCTGTTATAGCCTCGAGCTCCGGCGTTCCGGCCATGGCAGAGCTTAACAGGTTCGAGGCCGATACACGTGGCGAGTTTGGGATTGGCTCGGCTGCTCAGTACGGTTCTGCTGATCTCAGCAAAACAGTTCACTCCAATGAAAATTTCAGAAGAGCCAACTTTACTTCTGCCGACATGAGAGAGTCTGATTTCAGCGGTTCGACCTTCAATGGCGCATATCTTGAGAAAGCAGTTGCATACAAAGCTAACTTCTCAGGTGCTGATTTGAGCGATACATTGATGGACCGCATGGTGCTAAATGAGGCGAATCTGACAAATGCAGTGCTGGTCCGATCGGTTCTAACCAGAAGTGACCTCGGTGGTGCCAAAATCGAAGGTGCTGATTTTAGTGACGCTGTGATTGATCTTCTTCAGAAACAGGCTCTGTGTAAATACGCAACCGGGACAAACCCATTGACCGGAGTGGACACGAGGAAGAGTCTTGGCTGTGGAAATAGCCGGAGAAACGCATATGGTTCGCCTTCTTCTCCTCTTCTCAGTGCACCGCCTCAACGTCTGCTAGGCCGTGATGGATTCTGCGATGAAAAGACCGGTCTCTGTGATGTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

280

Amino Acids

30.06

Weight (kDa)

8.72

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	114 - 148	9.3e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	134 - 171	1.1e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	176 - 208	4.3e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	112
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	5 cut(s)	227, 230, 426, 517, 776
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	261
AcsI	RAATTY	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	626
AcvI	CACGTG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	109
AfaI	GTAC	1 cut(s)	332
AfeI	AGCGCT	1 cut(s)	184
AfiI	CCNNNNNNNGG	1 cut(s)	689
AflIII	ACRYGT	1 cut(s)	296
AgeI	ACCGGT	1 cut(s)	821
AgsI	TTSAA	2 cut(s)	132, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	4 cut(s)	118, 249, 274, 476
AluI	AGCT	4 cut(s)	118, 249, 274, 476
Alw21I	GWGCWC	2 cut(s)	251, 775
Alw26I	GTCTC	3 cut(s)	73, 100, 830
Alw44I	GTGCAC	1 cut(s)	771
AlwI	GGATC	1 cut(s)	48
AlwNI	CAGNNNCTG	2 cut(s)	491, 655
Ama87I	CYCGRG	1 cut(s)	244
Aor51HI	AGCGCT	1 cut(s)	184
AoxI	GGCC	3 cut(s)	261, 288, 793
ApaLI	GTGCAC	1 cut(s)	771
ApeKI	GCWGC	2 cut(s)	218, 323
ApoI	RAATTY	1 cut(s)	373
AsiGI	ACCGGT	1 cut(s)	821
AspLEI	GCGC	2 cut(s)	185, 446
AspS9I	GGNCC	2 cut(s)	514, 559
AsuC2I	CCSGG	1 cut(s)	673
AvaI	CYCGRG	1 cut(s)	244
AvaII	GGWCC	2 cut(s)	514, 559
BaeGI	GKGCMC	1 cut(s)	775
BanI	GGYRCC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	251
BauI	CACGAG	1 cut(s)	700
BbrPI	CACGTG	1 cut(s)	299
Bbv12I	GWGCWC	2 cut(s)	251, 775
BbvI	GCAGC	2 cut(s)	230, 310
BccI	CCATC	2 cut(s)	505, 794
BceAI	ACGGC	1 cut(s)	780
BcgI	CGANNNNNNTGC	2 cut(s)	729, 763
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	3 cut(s)	73, 100, 830
BfaI	CTAG	2 cut(s)	162, 791
BfmI	CTRYAG	2 cut(s)	113, 216
BfoI	RGCGCY	1 cut(s)	186
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	4 cut(s)	219, 228, 231, 324
BlsI	GCNGC	4 cut(s)	220, 229, 232, 325
Bme1390I	CCNGG	1 cut(s)	673
Bme18I	GGWCC	2 cut(s)	514, 559
BmeT110I	CYCGRG	1 cut(s)	244
BmgT120I	GGNCC	2 cut(s)	514, 559
BmiI	GGNNCC	1 cut(s)	595
BmrFI	CCNGG	1 cut(s)	673
BpuEI	CTTGAG	2 cut(s)	55, 473
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	299
BsaBI	GATNNNNATC	1 cut(s)	58
BsaHI	GRCGYC	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	830
BsaJI	CCNNGG	2 cut(s)	264, 586
BsaWI	WCCGGW	2 cut(s)	689, 821
Bsc4I	CCNNNNNNNGG	1 cut(s)	689
Bse118I	RCCGGY	1 cut(s)	821
Bse3DI	GCAATG	1 cut(s)	228
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	2 cut(s)	264, 586
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	689
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	5 cut(s)	177, 341, 361, 498, 781
BseRI	GAGGAG	2 cut(s)	12, 750
BseSI	GKGCMC	1 cut(s)	775
BseXI	GCAGC	2 cut(s)	230, 310
Bsh1285I	CGRYCG	1 cut(s)	566
BshFI	GGCC	3 cut(s)	263, 290, 795
BshNI	GGYRCC	1 cut(s)	593
BshTI	ACCGGT	1 cut(s)	821
BsiEI	CGRYCG	1 cut(s)	566
BsiHKAI	GWGCWC	2 cut(s)	251, 775
BsiHKCI	CYCGRG	1 cut(s)	244
BsiSI	CCGG	6 cut(s)	252, 260, 672, 690, 730, 822
BslFI	GGGAC	1 cut(s)	688
BslI	CCNNNNNNNGG	1 cut(s)	689
BsmAI	GTCTC	3 cut(s)	73, 100, 830
BsmBI	CGTCTC	1 cut(s)	100
BsmFI	GGGAC	1 cut(s)	688
BsnI	GGCC	3 cut(s)	263, 290, 795
Bso31I	GGTCTC	1 cut(s)	830
BsoBI	CYCGRG	1 cut(s)	244
Bsp1286I	GDGCHC	2 cut(s)	251, 775
Bsp143I	GATC	5 cut(s)	53, 74, 343, 563, 634
Bsp19I	CCATGG	1 cut(s)	264
BspACI	CCGC	5 cut(s)	227, 230, 426, 517, 776
BspANI	GGCC	3 cut(s)	263, 290, 795
BspCNI	CTCAG	5 cut(s)	178, 340, 360, 497, 780
BspLI	GGNNCC	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	1 cut(s)	48
BspQI	GCTCTTC	1 cut(s)	376
BspT107I	GGYRCC	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	830
BsrDI	GCAATG	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	821
BssAI	RCCGGY	1 cut(s)	821
BssECI	CCNNGG	2 cut(s)	264, 586
BssMI	GATC	5 cut(s)	53, 74, 343, 563, 634
BssNI	GRCGYC	1 cut(s)	109
BssSI	CACGAG	1 cut(s)	700
BssT1I	CCWWGG	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	700
Bst4CI	ACNGT	2 cut(s)	335, 358
Bst6I	CTCTTC	5 cut(s)	16, 197, 376, 701, 768
BstACI	GRCGYC	1 cut(s)	109
BstBAI	YACGTR	1 cut(s)	299
BstDEI	CTNAG	7 cut(s)	119, 136, 186, 327, 347, 484, 767
BstDSI	CCRYGG	1 cut(s)	264
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	185, 446
BstKTI	GATC	5 cut(s)	56, 77, 346, 566, 637
BstMAI	GTCTC	3 cut(s)	73, 100, 830
BstMBI	GATC	5 cut(s)	53, 74, 343, 563, 634
BstMCI	CGRYCG	1 cut(s)	566
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 227, 239, 473
BstSCI	CCNGG	1 cut(s)	671
BstSFI	CTRYAG	2 cut(s)	113, 216
BstSLI	GKGCMC	1 cut(s)	775
BstV1I	GCAGC	2 cut(s)	230, 310
BstX2I	RGATCY	2 cut(s)	53, 74
BstYI	RGATCY	2 cut(s)	53, 74
BsuRI	GGCC	3 cut(s)	263, 290, 795
BtgI	CCRYGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	825
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	2 cut(s)	558, 775
CaiI	CAGNNNCTG	2 cut(s)	491, 655
CfoI	GCGC	2 cut(s)	185, 446
Cfr10I	RCCGGY	1 cut(s)	821
Cfr13I	GGNCC	2 cut(s)	514, 559
CseI	GACGC	1 cut(s)	632
Csp6I	GTAC	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	821
CviAII	CATG	4 cut(s)	198, 265, 406, 520
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	7 cut(s)	119, 136, 186, 327, 347, 484, 767
DpnI	GATC	5 cut(s)	55, 76, 345, 565, 636
DpnII	GATC	5 cut(s)	53, 74, 343, 563, 634
EaeI	YGGCCR	1 cut(s)	261
Eam1104I	CTCTTC	5 cut(s)	16, 197, 376, 701, 768
EarI	CTCTTC	5 cut(s)	16, 197, 376, 701, 768
Ecl136II	GAGCTC	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	264
Eco24I	GRGCYC	1 cut(s)	251
Eco31I	GGTCTC	1 cut(s)	830
Eco47I	GGWCC	2 cut(s)	514, 559
Eco47III	AGCGCT	1 cut(s)	184
Eco53kI	GAGCTC	1 cut(s)	249
Eco57I	CTGAAG	1 cut(s)	626
Eco72I	CACGTG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	264
EcoT38I	GRGCYC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	264
Esp3I	CGTCTC	1 cut(s)	100
FaeI	CATG	4 cut(s)	201, 268, 409, 523
FalI	AAGNNNNNCTT	2 cut(s)	64, 96
FaqI	GGGAC	1 cut(s)	688
FatI	CATG	4 cut(s)	197, 264, 405, 519
FauNDI	CATATG	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	219, 228, 231, 324
FriOI	GRGCYC	1 cut(s)	251
Fsp4HI	GCNGC	4 cut(s)	219, 228, 231, 324
FspBI	CTAG	2 cut(s)	162, 791
GlaI	GCGC	2 cut(s)	184, 445
GluI	GCNGC	4 cut(s)	219, 228, 231, 324
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	3 cut(s)	263, 290, 795
HapII	CCGG	6 cut(s)	252, 260, 672, 690, 730, 822
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	2 cut(s)	185, 446
Hin1I	GRCGYC	1 cut(s)	109
Hin1II	CATG	4 cut(s)	201, 268, 409, 523
Hin6I	GCGC	2 cut(s)	183, 444
HinP1I	GCGC	2 cut(s)	183, 444
HinfI	GANTC	6 cut(s)	149, 188, 413, 538, 709, 804
HpaII	CCGG	6 cut(s)	252, 260, 672, 690, 730, 822
Hpy166II	GTNNAC	4 cut(s)	113, 361, 697, 773
Hpy188I	TCNGA	6 cut(s)	93, 380, 418, 543, 563, 645
Hpy188III	TCNNGA	3 cut(s)	51, 72, 452
Hpy8I	GTNNAC	4 cut(s)	113, 361, 697, 773
HpyAV	CCTTC	4 cut(s)	161, 445, 599, 762
HpyCH4III	ACNGT	2 cut(s)	335, 358
HpyCH4IV	ACGT	3 cut(s)	109, 298, 784
HpyCH4V	TGCA	4 cut(s)	218, 467, 551, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 227, 239, 473
HpyF3I	CTNAG	7 cut(s)	119, 136, 186, 327, 347, 484, 767
HpySE526I	ACGT	3 cut(s)	109, 298, 784
Hsp92I	GRCGYC	1 cut(s)	109
Hsp92II	CATG	4 cut(s)	201, 268, 409, 523
HspAI	GCGC	2 cut(s)	183, 444
Kzo9I	GATC	5 cut(s)	53, 74, 343, 563, 634
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	254
Lsp1109I	GCAGC	2 cut(s)	230, 310
MaeI	CTAG	2 cut(s)	162, 791
MaeII	ACGT	3 cut(s)	109, 298, 784
MaeIII	GTNAC	3 cut(s)	36, 581, 620
MalI	GATC	5 cut(s)	55, 76, 345, 565, 636
MboI	GATC	5 cut(s)	53, 74, 343, 563, 634
MboII	GAAGA	9 cut(s)	3, 54, 214, 393, 629, 632, 718, 747, 755
MflI	RGATCY	2 cut(s)	53, 74
MhlI	GDGCHC	2 cut(s)	251, 775
MluCI	AATT	1 cut(s)	373
MlyI	GAGTC	3 cut(s)	197, 422, 718
MseI	TTAA	1 cut(s)	276
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	426
MspI	CCGG	6 cut(s)	252, 260, 672, 690, 730, 822
MspR9I	CCNGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	4 cut(s)	224, 227, 239, 473
NciI	CCSGG	1 cut(s)	673
NcoI	CCATGG	1 cut(s)	264
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	5 cut(s)	53, 74, 343, 563, 634
NlaIII	CATG	4 cut(s)	201, 268, 409, 523
NlaIV	GGNNCC	1 cut(s)	595
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	36, 581, 620
PaeR7I	CTCGAG	1 cut(s)	244
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	149, 538, 804
PinAI	ACCGGT	1 cut(s)	821
PkrI	GCNGC	4 cut(s)	220, 229, 232, 325
Ple19I	CGATCG	1 cut(s)	566
PleI	GAGTC	3 cut(s)	196, 421, 717
PmaCI	CACGTG	1 cut(s)	299
PmlI	CACGTG	1 cut(s)	299
PpsI	GAGTC	3 cut(s)	196, 421, 717
Ppu21I	YACGTR	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	514, 559
PspXI	VCTCGAGB	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	220
PstNI	CAGNNNCTG	2 cut(s)	491, 655
PsuI	RGATCY	2 cut(s)	53, 74
PvuI	CGATCG	1 cut(s)	566
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	251
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	1 cut(s)	276
SatI	GCNGC	4 cut(s)	219, 228, 231, 324
Sau3AI	GATC	5 cut(s)	53, 74, 343, 563, 634
Sau96I	GGNCC	2 cut(s)	514, 559
SchI	GAGTC	3 cut(s)	197, 422, 718
ScrFI	CCNGG	1 cut(s)	673
SduI	GDGCHC	2 cut(s)	251, 775
SfcI	CTRYAG	2 cut(s)	113, 216
Sfr274I	CTCGAG	1 cut(s)	244
SinI	GGWCC	2 cut(s)	514, 559
SlaI	CTCGAG	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	3 cut(s)	70, 244, 452
SmoI	CTYRAG	3 cut(s)	70, 244, 452
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	5 cut(s)	227, 230, 426, 517, 776
SspMI	CTAG	2 cut(s)	162, 791
SstI	GAGCTC	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	671
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	2 cut(s)	335, 358
TaiI	ACGT	3 cut(s)	112, 301, 787
TaqI	TCGA	5 cut(s)	50, 245, 285, 431, 603
TasI	AATT	1 cut(s)	373
TauI	GCSGC	2 cut(s)	230, 233
TfiI	GAWTC	3 cut(s)	149, 538, 804
Tru1I	TTAA	1 cut(s)	276
Tru9I	TTAA	1 cut(s)	276
TscAI	CASTG	2 cut(s)	558, 775
TseFI	GTSAC	3 cut(s)	36, 581, 620
TseI	GCWGC	2 cut(s)	218, 323
Tsp45I	GTSAC	3 cut(s)	36, 581, 620
TspDTI	ATGAA	4 cut(s)	47, 141, 384, 828
TspRI	CASTG	2 cut(s)	558, 775
VneI	GTGCAC	1 cut(s)	771
VpaK11BI	GGWCC	2 cut(s)	514, 559
XapI	RAATTY	1 cut(s)	373
XhoI	CTCGAG	1 cut(s)	244
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	2 cut(s)	162, 791
ZraI	GACGTC	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.