Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

13905919 .. 13908509

Gene Structure 2591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1065500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCACTCACTTTTATCTCCCCTTTATCCATTAAATCCTTAACAAGTTGTTCTTCCAGTTCAAAAGCTCCTCCAGTTCGGCTATCATCCCTCTCCAACAAGCACTTTTCTGTAGTCTGTCAGATAGACCCTGCAAAGAGACACCATTTTCATGGTTGTTCCAACAAGCAAAACAAGACCAATAATGCAGAGTCAAAGAACTGGAAAAATATTGTTTCAGCAGCATTGGCAGCAGCAGTTATAAGCTTTAGCTCTGGCAATATGCCTGCCATTGCTGACCTCAATAAATTTGAAGCTGAGACACCTGGTGAATTTGGAATTGGATCAGCAGCCCAATTTGGATCTGCAGACCTCAGGAAAGCTGTGCATGTGAACGAAAATTTCAGAAGAGCCAATTTCACATCTGCGGATATGAGGGAATCTGATTTCAGTGGTTCAACTTTCAATGGTGCATACATGGAGAAAGCTGTTGCATATAAGGCAAATTTCGCAGGTGCGGATTTGAGCGACACGTTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAAGACGCCGTGCTAGTTAGATCTGTTCTCACCCGCAGTGATCTCGGGGGTGCCCTCATTGAAGGAGCTGACTTCAGTGACGCGGCTCTTTGCAAGTATGCAAGTGGGACGAACCCAACGACAGGGGTGAGCACAAGAGCAAGCCTAGGCTGTGGGAACAGTCGCCGAAATGCTTATGGCAGTCCCTCTTCCCCTCTGCTAAGTGCTCCGCCTCAGAAGCTGCTTAACCGGGATGGATTCTGTGATCAAGGCACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

275

Amino Acids

28.98

Weight (kDa)

8.82

Isoelectric Point (pI)

39.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	111 - 150	1.1e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	136 - 173	1.5e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	242
AarI	CACCTGC	1 cut(s)	482
Acc36I	ACCTGC	1 cut(s)	482
AccB1I	GGYRCC	1 cut(s)	599
AccII	CGCG	1 cut(s)	632
AciI	CCGC	5 cut(s)	407, 497, 583, 632, 758
AclWI	GGATC	3 cut(s)	331, 349, 528
AcsI	RAATTY	4 cut(s)	287, 311, 379, 484
AcuI	CTGAAG	1 cut(s)	607
AcyI	GRCGYC	1 cut(s)	555
AdeI	CACNNNGTG	1 cut(s)	308
AfiI	CCNNNNNNNGG	1 cut(s)	671
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	63, 293, 438, 445, 611
AjnI	CCWGG	1 cut(s)	304
AjuI	GAANNNNNNNTTGG	2 cut(s)	303, 335
AluBI	AGCT	9 cut(s)	68, 246, 252, 296, 362, 467, 542, 617, 769
AluI	AGCT	9 cut(s)	68, 246, 252, 296, 362, 467, 542, 617, 769
Alw21I	GWGCWC	2 cut(s)	683, 757
Alw26I	GTCTC	2 cut(s)	133, 293
AlwI	GGATC	3 cut(s)	331, 349, 528
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	1 cut(s)	593
ApeKI	GCWGC	5 cut(s)	221, 230, 233, 329, 769
ApoI	RAATTY	4 cut(s)	287, 311, 379, 484
AspA2I	CCTAGG	1 cut(s)	694
AspS9I	GGNCC	1 cut(s)	529
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	3 cut(s)	320, 571, 688
AvaI	CYCGRG	1 cut(s)	593
AvaII	GGWCC	1 cut(s)	529
AvrII	CCTAGG	1 cut(s)	694
AxyI	CCTNAGG	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	604
BanI	GGYRCC	1 cut(s)	599
Bbv12I	GWGCWC	2 cut(s)	683, 757
BbvI	GCAGC	5 cut(s)	233, 242, 245, 341, 756
BccI	CCATC	2 cut(s)	511, 776
BceAI	ACGGC	1 cut(s)	542
BcgI	CGANNNNNNTGC	2 cut(s)	574, 608
BciT130I	CCWGG	1 cut(s)	306
BclI	TGATCA	1 cut(s)	793
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	2 cut(s)	133, 293
BfaI	CTAG	2 cut(s)	563, 695
BfmI	CTRYAG	2 cut(s)	111, 345
BfuAI	ACCTGC	1 cut(s)	482
BglII	AGATCT	1 cut(s)	569
BisI	GCNGC	6 cut(s)	222, 231, 234, 330, 633, 770
BlnI	CCTAGG	1 cut(s)	694
BlsI	GCNGC	6 cut(s)	223, 232, 235, 331, 634, 771
Bme1390I	CCNGG	2 cut(s)	306, 779
Bme18I	GGWCC	1 cut(s)	529
BmeT110I	CYCGRG	1 cut(s)	593
BmgT120I	GGNCC	1 cut(s)	529
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	2 cut(s)	306, 779
BpmI	CTGGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	779
BsaHI	GRCGYC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	1 cut(s)	671
Bse1I	ACTGG	4 cut(s)	57, 74, 206, 808
Bse21I	CCTNAGG	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	2 cut(s)	86, 787
BseLI	CCNNNNNNNGG	1 cut(s)	671
BseMI	GCAATG	1 cut(s)	270
BseMII	CTCAG	3 cut(s)	288, 367, 776
BseNI	ACTGG	4 cut(s)	57, 74, 206, 808
BseRI	GAGGAG	1 cut(s)	60
BseSI	GKGCMC	1 cut(s)	604
BseXI	GCAGC	5 cut(s)	233, 242, 245, 341, 756
Bsh1236I	CGCG	1 cut(s)	632
BshNI	GGYRCC	1 cut(s)	599
BsiHKAI	GWGCWC	2 cut(s)	683, 757
BsiHKCI	CYCGRG	1 cut(s)	593
BsiSI	CCGG	1 cut(s)	778
BslFI	GGGAC	2 cut(s)	670, 717
BslI	CCNNNNNNNGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	133, 293
BsmFI	GGGAC	2 cut(s)	670, 717
BsoBI	CYCGRG	1 cut(s)	593
Bsp1286I	GDGCHC	3 cut(s)	604, 683, 757
Bsp143I	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
BspACI	CCGC	5 cut(s)	407, 497, 583, 632, 758
BspCNI	CTCAG	3 cut(s)	289, 366, 775
BspFNI	CGCG	1 cut(s)	632
BspLI	GGNNCC	1 cut(s)	601
BspMAI	CTGCAG	1 cut(s)	349
BspMI	ACCTGC	1 cut(s)	482
BspPI	GGATC	3 cut(s)	331, 349, 528
BspQI	GCTCTTC	1 cut(s)	382
BspT107I	GGYRCC	1 cut(s)	599
BsrDI	GCAATG	1 cut(s)	270
BsrI	ACTGG	4 cut(s)	57, 74, 206, 808
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
BssNI	GRCGYC	1 cut(s)	555
BssT1I	CCWWGG	1 cut(s)	694
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	710
Bst6I	CTCTTC	2 cut(s)	382, 742
BstACI	GRCGYC	1 cut(s)	555
BstC8I	GCNNGC	2 cut(s)	267, 691
BstDEI	CTNAG	4 cut(s)	297, 353, 749, 762
BstF5I	GGATG	2 cut(s)	86, 787
BstFNI	CGCG	1 cut(s)	632
BstKTI	GATC	6 cut(s)	326, 344, 523, 572, 592, 796
BstMAI	GTCTC	2 cut(s)	133, 293
BstMBI	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
BstMWI	GCNNNNNNNGC	5 cut(s)	227, 230, 479, 488, 766
BstNI	CCWGG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	371
BstSCI	CCNGG	2 cut(s)	304, 777
BstSFI	CTRYAG	2 cut(s)	111, 345
BstSLI	GKGCMC	1 cut(s)	604
BstUI	CGCG	1 cut(s)	632
BstV1I	GCAGC	5 cut(s)	233, 242, 245, 341, 756
BstX2I	RGATCY	2 cut(s)	341, 569
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	2 cut(s)	341, 569
Bsu36I	CCTNAGG	1 cut(s)	353
BtsCI	GGATG	2 cut(s)	86, 787
BtsI	GCAGTG	1 cut(s)	592
BtsIMutI	CAGTG	4 cut(s)	436, 592, 631, 801
BveI	ACCTGC	1 cut(s)	482
Cac8I	GCNNGC	2 cut(s)	267, 691
CaiI	CAGNNNCTG	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	529
CseI	GACGC	2 cut(s)	563, 638
CsiI	ACCWGGT	1 cut(s)	304
CviAII	CATG	3 cut(s)	152, 368, 457
DdeI	CTNAG	4 cut(s)	297, 353, 749, 762
DpnI	GATC	6 cut(s)	325, 343, 522, 571, 591, 795
DpnII	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
DraIII	CACNNNGTG	1 cut(s)	308
Eam1104I	CTCTTC	2 cut(s)	382, 742
EarI	CTCTTC	2 cut(s)	382, 742
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	1 cut(s)	694
Eco47I	GGWCC	1 cut(s)	529
Eco57I	CTGAAG	1 cut(s)	607
Eco81I	CCTNAGG	1 cut(s)	353
Eco88I	CYCGRG	1 cut(s)	593
EcoRII	CCWGG	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	694
ErhI	CCWWGG	1 cut(s)	694
FaeI	CATG	3 cut(s)	155, 371, 460
FalI	AAGNNNNNCTT	2 cut(s)	37, 69
FaqI	GGGAC	2 cut(s)	670, 717
FatI	CATG	3 cut(s)	151, 367, 456
FauI	CCCGC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	793
Fnu4HI	GCNGC	6 cut(s)	222, 231, 234, 330, 633, 770
FokI	GGATG	2 cut(s)	73, 794
Fsp4HI	GCNGC	6 cut(s)	222, 231, 234, 330, 633, 770
FspBI	CTAG	2 cut(s)	563, 695
GluI	GCNGC	6 cut(s)	222, 231, 234, 330, 633, 770
GsuI	CTGGAG	1 cut(s)	57
HapII	CCGG	1 cut(s)	778
HgaI	GACGC	2 cut(s)	563, 638
Hin1I	GRCGYC	1 cut(s)	555
Hin1II	CATG	3 cut(s)	155, 371, 460
HindIII	AAGCTT	1 cut(s)	244
HinfI	GANTC	3 cut(s)	191, 419, 786
HpaII	CCGG	1 cut(s)	778
HphI	GGTGA	3 cut(s)	320, 571, 688
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	4 cut(s)	123, 386, 424, 765
Hpy188III	TCNNGA	1 cut(s)	355
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	1 cut(s)	605
HpyCH4III	ACNGT	1 cut(s)	710
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	8 cut(s)	134, 188, 347, 367, 452, 473, 642, 650
HpyF10VI	GCNNNNNNNGC	5 cut(s)	227, 230, 479, 488, 766
HpyF3I	CTNAG	4 cut(s)	297, 353, 749, 762
HpySE526I	ACGT	1 cut(s)	512
Hsp92I	GRCGYC	1 cut(s)	555
Hsp92II	CATG	3 cut(s)	155, 371, 460
Ksp22I	TGATCA	1 cut(s)	793
Kzo9I	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
LguI	GCTCTTC	1 cut(s)	382
LmnI	GCTCC	3 cut(s)	73, 614, 760
Lsp1109I	GCAGC	5 cut(s)	233, 242, 245, 341, 756
MabI	ACCWGGT	1 cut(s)	304
MaeI	CTAG	2 cut(s)	563, 695
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	6 cut(s)	325, 343, 522, 571, 591, 795
MboI	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
MboII	GAAGA	3 cut(s)	45, 399, 729
MflI	RGATCY	2 cut(s)	341, 569
MhlI	GDGCHC	3 cut(s)	604, 683, 757
MluCI	AATT	7 cut(s)	287, 311, 318, 335, 379, 394, 484
MlyI	GAGTC	1 cut(s)	200
MmeI	TCCRAC	2 cut(s)	120, 186
MnlI	CCTC	9 cut(s)	81, 101, 290, 362, 408, 614, 745, 753, 771
MseI	TTAA	4 cut(s)	33, 41, 534, 774
MslI	CAYNNNNRTG	2 cut(s)	150, 515
MspI	CCGG	1 cut(s)	778
MspR9I	CCNGG	2 cut(s)	306, 779
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	632
MwoI	GCNNNNNNNGC	5 cut(s)	227, 230, 479, 488, 766
NciI	CCSGG	1 cut(s)	779
NdeII	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
NlaIII	CATG	3 cut(s)	155, 371, 460
NlaIV	GGNNCC	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	626
NspI	RCATGY	1 cut(s)	371
PaqCI	CACCTGC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	665
PfeI	GAWTC	2 cut(s)	419, 786
PkrI	GCNGC	6 cut(s)	223, 232, 235, 331, 634, 771
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PsiI	TTATAA	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	601
PspPI	GGNCC	1 cut(s)	529
PstI	CTGCAG	1 cut(s)	349
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	2 cut(s)	341, 569
RseI	CAYNNNNRTG	2 cut(s)	150, 515
SapI	GCTCTTC	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	33, 41, 534, 774
SatI	GCNGC	6 cut(s)	222, 231, 234, 330, 633, 770
Sau3AI	GATC	6 cut(s)	323, 341, 520, 569, 589, 793
Sau96I	GGNCC	1 cut(s)	529
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	2 cut(s)	306, 779
SduI	GDGCHC	3 cut(s)	604, 683, 757
SexAI	ACCWGGT	1 cut(s)	304
SfcI	CTRYAG	2 cut(s)	111, 345
SinI	GGWCC	1 cut(s)	529
SmiMI	CAYNNNNRTG	2 cut(s)	150, 515
Sse9I	AATT	7 cut(s)	287, 311, 318, 335, 379, 394, 484
SsiI	CCGC	5 cut(s)	407, 497, 583, 632, 758
SspI	AATATT	1 cut(s)	211
SspMI	CTAG	2 cut(s)	563, 695
StyD4I	CCNGG	2 cut(s)	304, 777
StyI	CCWWGG	1 cut(s)	694
TaaI	ACNGT	1 cut(s)	710
TaiI	ACGT	1 cut(s)	515
TasI	AATT	7 cut(s)	287, 311, 318, 335, 379, 394, 484
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	2 cut(s)	419, 786
Tru1I	TTAA	4 cut(s)	33, 41, 534, 774
Tru9I	TTAA	4 cut(s)	33, 41, 534, 774
TscAI	CASTG	4 cut(s)	436, 592, 631, 808
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	5 cut(s)	221, 230, 233, 329, 769
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	2 cut(s)	140, 552
TspRI	CASTG	4 cut(s)	436, 592, 631, 808
VpaK11BI	GGWCC	1 cut(s)	529
XapI	RAATTY	4 cut(s)	287, 311, 379, 484
XceI	RCATGY	1 cut(s)	371
XmaJI	CCTAGG	1 cut(s)	694
XspI	CTAG	2 cut(s)	563, 695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.