Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

19866644 .. 19869585

Gene Structure 2942 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTGTACACATCTCAGCCAGAAAGTTCATGCCTCATCAAAGGAGCATATTGAACCTTCCCAATCCAATTTTCTCTCAAGTCCTACCTCAAATTCTAGTTTCTGTACTTCTTGGATCCTTGGCATCTATATCCAAATCACTCTGAAAATTGTAATGGCACTCACTTTTATTTCCTCACTTTCCATTCAGTCCTTAACCTCATCTTCTTCGAATTCAAAGACTTATCCAACCCGTCAGCAATCCCTCTCCAGACCCTTTTCCATCGTATGCCAGATAGACCCTAACAGACACAATTTTCAAGATGGTTCCCACAAGCAATGCATGACCATTAGAGAAGGGTCCAAGAATTGGAAAAACATAGTTTCAGTAGCATTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCCGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCGGATTTAAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCAGTTCTCACTCGAAGTGATCTTGGTGGCGCCCTAATCGAAGGCGCTGATTTCAGTGACGCCGTTTTGGACCTCTCCCAGAAGCAGGCTCTCTGCAAGTATGCGAATGGCACAAACCCAACTACAGGGGTGAGCACAAGATCAAGCCTAGGTTGCGGGAACAGTCGACGAAATGCTTATGGCTCTCCCTCATCCCCTCTGTTAAGCGCTCCACCTCAGAAACTACTTAATCGGGATGGATTCTGTGATCAAGAAACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

331

Amino Acids

35.64

Weight (kDa)

8.08

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	160 - 199	1.4e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	185 - 222	8e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	883
AciI	CCGC	3 cut(s)	414, 644, 873
AclWI	GGATC	4 cut(s)	109, 122, 478, 675
AcsI	RAATTY	4 cut(s)	91, 211, 458, 526
AcuI	CTGAAG	1 cut(s)	382
AcyI	GRCGYC	2 cut(s)	747, 777
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	7, 106, 513
AfeI	AGCGCT	1 cut(s)	925
AfiI	CCNNNNNNNGG	3 cut(s)	348, 802, 842
AflIII	ACRYGT	1 cut(s)	514
AgsI	TTSAA	6 cut(s)	53, 216, 299, 440, 585, 592
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	4 cut(s)	396, 402, 614, 689
AluI	AGCT	4 cut(s)	396, 402, 614, 689
Alw21I	GWGCWC	1 cut(s)	854
AlwI	GGATC	4 cut(s)	109, 122, 478, 675
Aor51HI	AGCGCT	1 cut(s)	925
ApeKI	GCWGC	2 cut(s)	383, 476
ApoI	RAATTY	4 cut(s)	91, 211, 458, 526
AspA2I	CCTAGG	1 cut(s)	865
AspLEI	GCGC	3 cut(s)	749, 764, 926
AspS9I	GGNCC	3 cut(s)	339, 676, 787
AsuHPI	GGTGA	2 cut(s)	467, 859
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	339, 676, 787
AvrII	CCTAGG	1 cut(s)	865
AxyI	CCTNAGG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	114
BanI	GGYRCC	1 cut(s)	746
Bbv12I	GWGCWC	1 cut(s)	854
BbvI	GCAGC	2 cut(s)	370, 488
BccI	CCATC	4 cut(s)	269, 296, 658, 947
BceAI	ACGGC	1 cut(s)	764
BciT130I	CCWGG	1 cut(s)	453
BclI	TGATCA	1 cut(s)	964
BfaI	CTAG	2 cut(s)	96, 866
BfmI	CTRYAG	4 cut(s)	384, 492, 615, 840
BfoI	RGCGCY	3 cut(s)	750, 765, 927
BisI	GCNGC	2 cut(s)	384, 477
BlnI	CCTAGG	1 cut(s)	865
BlsI	GCNGC	2 cut(s)	385, 478
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	3 cut(s)	339, 676, 787
BmgT120I	GGNCC	3 cut(s)	339, 676, 787
BmiI	GGNNCC	4 cut(s)	116, 307, 340, 748
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	2 cut(s)	132, 691
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	61, 626, 680
BsaHI	GRCGYC	2 cut(s)	747, 777
BsaJI	CCNNGG	2 cut(s)	118, 865
Bsc4I	CCNNNNNNNGG	3 cut(s)	348, 802, 842
Bse1I	ACTGG	1 cut(s)	979
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	2 cut(s)	323, 417
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	2 cut(s)	118, 865
BseGI	GGATG	3 cut(s)	706, 908, 958
BseLI	CCNNNNNNNGG	3 cut(s)	348, 802, 842
BseMI	GCAATG	2 cut(s)	323, 417
BseMII	CTCAG	3 cut(s)	28, 514, 947
BseNI	ACTGG	1 cut(s)	979
BseXI	GCAGC	2 cut(s)	370, 488
BshNI	GGYRCC	1 cut(s)	746
BsiHKAI	GWGCWC	1 cut(s)	854
BslI	CCNNNNNNNGG	3 cut(s)	348, 802, 842
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp1407I	TGTACA	1 cut(s)	5
Bsp143I	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
BspACI	CCGC	3 cut(s)	414, 644, 873
BspCNI	CTCAG	3 cut(s)	27, 513, 946
BspLI	GGNNCC	4 cut(s)	116, 307, 340, 748
BspMAI	CTGCAG	2 cut(s)	388, 496
BspPI	GGATC	4 cut(s)	109, 122, 478, 675
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	746
BsrDI	GCAATG	2 cut(s)	323, 417
BsrGI	TGTACA	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	979
BssECI	CCNNGG	2 cut(s)	118, 865
BssMI	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
BssNI	GRCGYC	2 cut(s)	747, 777
BssT1I	CCWWGG	2 cut(s)	118, 865
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	881
BstACI	GRCGYC	2 cut(s)	747, 777
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	3 cut(s)	410, 414, 804
BstDEI	CTNAG	3 cut(s)	14, 500, 933
BstF5I	GGATG	3 cut(s)	706, 908, 958
BstH2I	RGCGCY	3 cut(s)	750, 765, 927
BstHHI	GCGC	3 cut(s)	749, 764, 926
BstKTI	GATC	7 cut(s)	117, 473, 670, 719, 739, 860, 967
BstMBI	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
BstMWI	GCNNNNNNNGC	4 cut(s)	383, 626, 635, 870
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	2 cut(s)	412, 518
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	4 cut(s)	384, 492, 615, 840
BstV1I	GCAGC	2 cut(s)	370, 488
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
Bsu36I	CCTNAGG	1 cut(s)	500
BtsCI	GGATG	3 cut(s)	706, 908, 958
BtsIMutI	CAGTG	2 cut(s)	583, 778
Cac8I	GCNNGC	3 cut(s)	410, 414, 804
CfoI	GCGC	3 cut(s)	749, 764, 926
Cfr13I	GGNCC	3 cut(s)	339, 676, 787
CseI	GACGC	1 cut(s)	785
CsiI	ACCWGGT	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	6, 105, 512
CviAII	CATG	4 cut(s)	29, 322, 409, 515
CviQI	GTAC	3 cut(s)	6, 105, 512
DdeI	CTNAG	3 cut(s)	14, 500, 933
DinI	GGCGCC	1 cut(s)	748
DpnI	GATC	7 cut(s)	116, 472, 669, 718, 738, 859, 966
DpnII	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
DraIII	CACNNNGTG	1 cut(s)	455
Eco130I	CCWWGG	2 cut(s)	118, 865
Eco47I	GGWCC	3 cut(s)	339, 676, 787
Eco47III	AGCGCT	1 cut(s)	925
Eco57I	CTGAAG	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	2 cut(s)	118, 865
EcoT22I	ATGCAT	1 cut(s)	323
EgeI	GGCGCC	1 cut(s)	748
EheI	GGCGCC	1 cut(s)	748
ErhI	CCWWGG	2 cut(s)	118, 865
FaeI	CATG	4 cut(s)	32, 325, 412, 518
FatI	CATG	4 cut(s)	28, 321, 408, 514
FauI	CCCGC	2 cut(s)	421, 866
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	1 cut(s)	883
Fnu4HI	GCNGC	2 cut(s)	384, 477
FokI	GGATG	3 cut(s)	713, 895, 965
Fsp4HI	GCNGC	2 cut(s)	384, 477
FspBI	CTAG	2 cut(s)	96, 866
GlaI	GCGC	3 cut(s)	748, 763, 925
GluI	GCNGC	2 cut(s)	384, 477
GsuI	CTGGAG	1 cut(s)	232
HaeII	RGCGCY	3 cut(s)	750, 765, 927
HgaI	GACGC	1 cut(s)	785
HhaI	GCGC	3 cut(s)	749, 764, 926
Hin1I	GRCGYC	2 cut(s)	747, 777
Hin1II	CATG	4 cut(s)	32, 325, 412, 518
Hin6I	GCGC	3 cut(s)	747, 762, 924
HinP1I	GCGC	3 cut(s)	747, 762, 924
HincII	GTYRAC	1 cut(s)	884
HindII	GTYRAC	1 cut(s)	884
HinfI	GANTC	2 cut(s)	566, 957
HphI	GGTGA	2 cut(s)	467, 859
Hpy166II	GTNNAC	3 cut(s)	6, 8, 884
Hpy188I	TCNGA	3 cut(s)	144, 571, 936
Hpy188III	TCNNGA	6 cut(s)	249, 299, 502, 532, 950, 968
Hpy8I	GTNNAC	3 cut(s)	6, 8, 884
Hpy99I	CGWCG	1 cut(s)	888
HpyAV	CCTTC	3 cut(s)	66, 329, 752
HpyCH4III	ACNGT	1 cut(s)	881
HpyCH4V	TGCA	6 cut(s)	321, 386, 422, 494, 599, 813
HpyF10VI	GCNNNNNNNGC	4 cut(s)	383, 626, 635, 870
HpyF3I	CTNAG	3 cut(s)	14, 500, 933
Hsp92I	GRCGYC	2 cut(s)	747, 777
Hsp92II	CATG	4 cut(s)	32, 325, 412, 518
HspAI	GCGC	3 cut(s)	747, 762, 924
KasI	GGCGCC	1 cut(s)	746
Ksp22I	TGATCA	1 cut(s)	964
Kzo9I	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
LmnI	GCTCC	2 cut(s)	43, 931
Lsp1109I	GCAGC	2 cut(s)	370, 488
LweI	GCATC	2 cut(s)	132, 691
MabI	ACCWGGT	1 cut(s)	451
MaeI	CTAG	2 cut(s)	96, 866
MaeIII	GTNAC	1 cut(s)	773
MalI	GATC	7 cut(s)	116, 472, 669, 718, 738, 859, 966
MboI	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
MboII	GAAGA	2 cut(s)	195, 198
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	854
Mly113I	GGCGCC	1 cut(s)	747
MmeI	TCCRAC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	5 cut(s)	194, 650, 681, 920, 945
MslI	CAYNNNNRTG	2 cut(s)	519, 662
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	383, 626, 635, 870
NarI	GGCGCC	1 cut(s)	747
NdeII	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
NlaIII	CATG	4 cut(s)	32, 325, 412, 518
NlaIV	GGNNCC	4 cut(s)	116, 307, 340, 748
NmuCI	GTSAC	1 cut(s)	773
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	2 cut(s)	412, 518
NspV	TTCGAA	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	412
PciI	ACATGT	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	566, 957
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	385, 478
PluTI	GGCGCC	1 cut(s)	750
PscI	ACATGT	1 cut(s)	514
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	4 cut(s)	116, 307, 340, 748
PspPI	GGNCC	3 cut(s)	339, 676, 787
PstI	CTGCAG	2 cut(s)	388, 496
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	7, 106, 513
RsaNI	GTAC	3 cut(s)	6, 105, 512
RseI	CAYNNNNRTG	2 cut(s)	519, 662
SalI	GTCGAC	1 cut(s)	882
SaqAI	TTAA	5 cut(s)	194, 650, 681, 920, 945
SatI	GCNGC	2 cut(s)	384, 477
Sau3AI	GATC	7 cut(s)	114, 470, 667, 716, 736, 857, 964
Sau96I	GGNCC	3 cut(s)	339, 676, 787
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	1 cut(s)	854
SexAI	ACCWGGT	1 cut(s)	451
SfaNI	GCATC	2 cut(s)	132, 691
SfcI	CTRYAG	4 cut(s)	384, 492, 615, 840
SfoI	GGCGCC	1 cut(s)	748
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	3 cut(s)	339, 676, 787
SmiMI	CAYNNNNRTG	2 cut(s)	519, 662
SmlI	CTYRAG	3 cut(s)	76, 605, 695
SmoI	CTYRAG	3 cut(s)	76, 605, 695
SphI	GCATGC	1 cut(s)	412
SsiI	CCGC	3 cut(s)	414, 644, 873
SspDI	GGCGCC	1 cut(s)	746
SspMI	CTAG	2 cut(s)	96, 866
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	2 cut(s)	118, 865
TaaI	ACNGT	1 cut(s)	881
TaqI	TCGA	4 cut(s)	209, 730, 756, 883
TatI	WGTACW	3 cut(s)	5, 104, 511
TfiI	GAWTC	2 cut(s)	566, 957
Tru1I	TTAA	5 cut(s)	194, 650, 681, 920, 945
Tru9I	TTAA	5 cut(s)	194, 650, 681, 920, 945
TscAI	CASTG	2 cut(s)	583, 778
TseFI	GTSAC	1 cut(s)	773
TseI	GCWGC	2 cut(s)	383, 476
Tsp45I	GTSAC	1 cut(s)	773
TspDTI	ATGAA	3 cut(s)	17, 537, 699
TspRI	CASTG	2 cut(s)	583, 778
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	3 cut(s)	339, 676, 787
XapI	RAATTY	4 cut(s)	91, 211, 458, 526
XceI	RCATGY	2 cut(s)	412, 518
XmaJI	CCTAGG	1 cut(s)	865
XmiI	GTMKAC	1 cut(s)	883
XspI	CTAG	2 cut(s)	96, 866
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.