Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Forward (+)

8998728 .. 9000990

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G075900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCACTCACTTTTATTTCCTCACTATCCATTAAATCCTTAACCACATCTTCTCCAAATCCAAAGGCTCCCCCAATTCGTCTGCAATCCCTCTCCAACAAGCCCTTTTCACTGGTCTGCCAATTAGATCCTGAGAGACACCATTTTCATGATTGTTCCAGCAAGCAATGCAAGACAGTTAATGAAGATTCGAAGAAATGGAGAAGCATTGTTTCAGCAGCAATGGCAGCTGCAGTTATTAGCTTTAGCTCTGGCATGCCCGCCATTGCTGATCTCAATAAGTTTGAAGCTGACACACCTGGTGAATTTGGGATTGGATCAGCTGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCTGTACATGTGAATGAAAATTTCAGAAGAGCCAATTTCACTTCTGCGGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCAGTCGCATATAAGGCAAATTTTGCAGGTGCAGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGATGCTAATCTCAAAGATGCAGTGCTTGTTAGATCAGTTCTCACCCGAAGCGATCTTGGGGGTGCCCTCATTGAAGGTGCTGACTTCAGTGACGCCGTCTTGGACCTCCCCCAGAAGCAGGCTCTTTGCAAGTATGCAAGTGGGACGAACCCAACAACAGGGGTGAGCACAAGAGCAAGCTTAGGTTGTGGGAACAGTCGACGAAACGCTTATGGCACTCCCTCTTCCCCTCTGCTAAGTGCTCCCCCTCAGAGACTGCTTGATCGGGACGGATTCTGTGATCAAGGCACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

281

Amino Acids

29.86

Weight (kDa)

7.57

Isoelectric Point (pI)

37.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	476
Acc36I	ACCTGC	1 cut(s)	476
AccB1I	GGYRCC	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	730
AciI	CCGC	2 cut(s)	261, 401
AclWI	GGATC	3 cut(s)	122, 325, 522
AcsI	RAATTY	3 cut(s)	305, 373, 478
AcuI	CTGAAG	1 cut(s)	601
AcyI	GRCGYC	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	360
AfiI	CCNNNNNNNGG	2 cut(s)	649, 689
AflIII	ACRYGT	1 cut(s)	361
AgsI	TTSAA	4 cut(s)	287, 432, 439, 605
AjnI	CCWGG	1 cut(s)	298
AjuI	GAANNNNNNNTTGG	2 cut(s)	297, 329
AluBI	AGCT	7 cut(s)	230, 243, 249, 290, 323, 356, 711
AluI	AGCT	7 cut(s)	230, 243, 249, 290, 323, 356, 711
Alw21I	GWGCWC	2 cut(s)	701, 775
Alw26I	GTCTC	2 cut(s)	130, 778
AlwI	GGATC	3 cut(s)	122, 325, 522
AlwNI	CAGNNNCTG	1 cut(s)	787
ApeKI	GCWGC	4 cut(s)	218, 227, 230, 323
ApoI	RAATTY	3 cut(s)	305, 373, 478
AspS9I	GGNCC	2 cut(s)	523, 634
AsuHPI	GGTGA	3 cut(s)	314, 565, 706
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	2 cut(s)	523, 634
AxyI	CCTNAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	701, 775
BbvI	GCAGC	4 cut(s)	217, 230, 239, 310
BccI	CCATC	1 cut(s)	505
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	130, 778
BfmI	CTRYAG	2 cut(s)	231, 339
BfuAI	ACCTGC	1 cut(s)	476
BisI	GCNGC	4 cut(s)	219, 228, 231, 324
BlsI	GCNGC	4 cut(s)	220, 229, 232, 325
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	2 cut(s)	523, 634
BmgT120I	GGNCC	2 cut(s)	523, 634
BmiI	GGNNCC	2 cut(s)	69, 595
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	523, 538
Bpu10I	CCTNAGC	1 cut(s)	712
Bpu14I	TTCGAA	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	473
BsaBI	GATNNNNATC	1 cut(s)	537
BsaHI	GRCGYC	1 cut(s)	624
BsaXI	ACNNNNNCTCC	2 cut(s)	37, 67
Bsc4I	CCNNNNNNNGG	2 cut(s)	649, 689
Bse1I	ACTGG	2 cut(s)	117, 826
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	3 cut(s)	173, 228, 264
Bse8I	GATNNNNATC	1 cut(s)	537
BseBI	CCWGG	1 cut(s)	300
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	2 cut(s)	649, 689
BseMI	GCAATG	3 cut(s)	173, 228, 264
BseMII	CTCAG	3 cut(s)	123, 361, 794
BseNI	ACTGG	2 cut(s)	117, 826
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	4 cut(s)	217, 230, 239, 310
BsgI	GTGCAG	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	2 cut(s)	701, 775
BslFI	GGGAC	2 cut(s)	688, 812
BslI	CCNNNNNNNGG	2 cut(s)	649, 689
BsmAI	GTCTC	2 cut(s)	130, 778
BsmFI	GGGAC	2 cut(s)	688, 812
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	3 cut(s)	598, 701, 775
Bsp1407I	TGTACA	1 cut(s)	358
Bsp143I	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
BspACI	CCGC	2 cut(s)	261, 401
BspCNI	CTCAG	3 cut(s)	124, 360, 793
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	2 cut(s)	69, 595
BspMAI	CTGCAG	2 cut(s)	235, 343
BspMI	ACCTGC	1 cut(s)	476
BspPI	GGATC	3 cut(s)	122, 325, 522
BspQI	GCTCTTC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	593
BsrDI	GCAATG	3 cut(s)	173, 228, 264
BsrGI	TGTACA	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	117, 826
BssMI	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
BssNI	GRCGYC	1 cut(s)	624
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	178, 728
Bst6I	CTCTTC	2 cut(s)	376, 760
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	2 cut(s)	168, 482
BstAUI	TGTACA	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	5 cut(s)	164, 257, 261, 651, 709
BstDEI	CTNAG	5 cut(s)	132, 347, 712, 767, 780
BstKTI	GATC	8 cut(s)	130, 274, 320, 517, 566, 586, 796, 814
BstMAI	GTCTC	2 cut(s)	130, 778
BstMBI	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
BstMWI	GCNNNNNNNGC	5 cut(s)	168, 224, 227, 473, 482
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	2 cut(s)	259, 365
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	2 cut(s)	231, 339
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	4 cut(s)	217, 230, 239, 310
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
Bsu36I	CCTNAGG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	5 cut(s)	110, 430, 558, 625, 819
BveI	ACCTGC	1 cut(s)	476
Cac8I	GCNNGC	5 cut(s)	164, 257, 261, 651, 709
CaiI	CAGNNNCTG	1 cut(s)	787
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	2 cut(s)	523, 634
CseI	GACGC	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	3 cut(s)	149, 256, 362
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	5 cut(s)	132, 347, 712, 767, 780
DpnI	GATC	8 cut(s)	129, 273, 319, 516, 565, 585, 795, 813
DpnII	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
DraIII	CACNNNGTG	1 cut(s)	302
Eam1104I	CTCTTC	2 cut(s)	376, 760
EarI	CTCTTC	2 cut(s)	376, 760
Eco47I	GGWCC	2 cut(s)	523, 634
Eco57I	CTGAAG	1 cut(s)	601
Eco81I	CCTNAGG	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	298
FaeI	CATG	3 cut(s)	152, 259, 365
FaqI	GGGAC	2 cut(s)	688, 812
FatI	CATG	3 cut(s)	148, 255, 361
FauI	CCCGC	1 cut(s)	268
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	219, 228, 231, 324
Fsp4HI	GCNGC	4 cut(s)	219, 228, 231, 324
GluI	GCNGC	4 cut(s)	219, 228, 231, 324
HgaI	GACGC	1 cut(s)	632
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	3 cut(s)	152, 259, 365
HincII	GTYRAC	1 cut(s)	731
HindII	GTYRAC	1 cut(s)	731
HindIII	AAGCTT	1 cut(s)	709
HinfI	GANTC	3 cut(s)	188, 413, 804
HphI	GGTGA	3 cut(s)	314, 565, 706
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	3 cut(s)	380, 418, 783
Hpy188III	TCNNGA	4 cut(s)	131, 149, 349, 797
Hpy8I	GTNNAC	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	1 cut(s)	599
HpyCH4III	ACNGT	2 cut(s)	178, 728
HpyF10VI	GCNNNNNNNGC	5 cut(s)	168, 224, 227, 473, 482
HpyF3I	CTNAG	5 cut(s)	132, 347, 712, 767, 780
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	152, 259, 365
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	2 cut(s)	73, 778
Lsp1109I	GCAGC	4 cut(s)	217, 230, 239, 310
LweI	GCATC	2 cut(s)	523, 538
MabI	ACCWGGT	1 cut(s)	298
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	8 cut(s)	129, 273, 319, 516, 565, 585, 795, 813
MboI	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
MboII	GAAGA	5 cut(s)	42, 197, 205, 393, 747
MflI	RGATCY	1 cut(s)	127
MhlI	GDGCHC	3 cut(s)	598, 701, 775
MluCI	AATT	7 cut(s)	75, 122, 305, 329, 373, 388, 478
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	9 cut(s)	31, 101, 356, 402, 608, 647, 763, 771, 789
MseI	TTAA	4 cut(s)	33, 41, 180, 528
MslI	CAYNNNNRTG	3 cut(s)	147, 366, 509
MspA1I	CMGCKG	2 cut(s)	230, 323
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	5 cut(s)	168, 224, 227, 473, 482
NdeII	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
NlaIII	CATG	3 cut(s)	152, 259, 365
NlaIV	GGNNCC	2 cut(s)	69, 595
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	2 cut(s)	259, 365
NspV	TTCGAA	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	259
PagI	TCATGA	1 cut(s)	148
PaqCI	CACCTGC	1 cut(s)	476
PciI	ACATGT	1 cut(s)	361
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	3 cut(s)	188, 413, 804
PflFI	GACNNNGTC	1 cut(s)	626
PkrI	GCNGC	4 cut(s)	220, 229, 232, 325
PscI	ACATGT	1 cut(s)	361
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	2 cut(s)	69, 595
PspPI	GGNCC	2 cut(s)	523, 634
PstI	CTGCAG	2 cut(s)	235, 343
PstNI	CAGNNNCTG	1 cut(s)	787
PsuI	RGATCY	1 cut(s)	127
PsyI	GACNNNGTC	1 cut(s)	626
PvuII	CAGCTG	2 cut(s)	230, 323
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	3 cut(s)	147, 366, 509
SalI	GTCGAC	1 cut(s)	729
SapI	GCTCTTC	1 cut(s)	376
SaqAI	TTAA	4 cut(s)	33, 41, 180, 528
SatI	GCNGC	4 cut(s)	219, 228, 231, 324
Sau3AI	GATC	8 cut(s)	127, 271, 317, 514, 563, 583, 793, 811
Sau96I	GGNCC	2 cut(s)	523, 634
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	3 cut(s)	598, 701, 775
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	2 cut(s)	523, 538
SfcI	CTRYAG	2 cut(s)	231, 339
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	2 cut(s)	523, 634
SmiMI	CAYNNNNRTG	3 cut(s)	147, 366, 509
SmlI	CTYRAG	1 cut(s)	452
SmoI	CTYRAG	1 cut(s)	452
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	7 cut(s)	75, 122, 305, 329, 373, 388, 478
SsiI	CCGC	2 cut(s)	261, 401
StyD4I	CCNGG	1 cut(s)	298
TaaI	ACNGT	2 cut(s)	178, 728
TaqI	TCGA	2 cut(s)	191, 730
TasI	AATT	7 cut(s)	75, 122, 305, 329, 373, 388, 478
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	3 cut(s)	188, 413, 804
Tru1I	TTAA	4 cut(s)	33, 41, 180, 528
Tru9I	TTAA	4 cut(s)	33, 41, 180, 528
TscAI	CASTG	5 cut(s)	117, 430, 558, 625, 826
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	4 cut(s)	218, 227, 230, 323
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	3 cut(s)	137, 198, 384
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	5 cut(s)	117, 430, 558, 625, 826
Tth111I	GACNNNGTC	1 cut(s)	626
VpaK11BI	GGWCC	2 cut(s)	523, 634
XapI	RAATTY	3 cut(s)	305, 373, 478
XceI	RCATGY	2 cut(s)	259, 365
XmiI	GTMKAC	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.