Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

16217649 .. 16220521

Gene Structure 2873 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTTGATATTTGGCTTGGCAACAAGTGGCAAACAACCAACCAAAGAACAAACAAACACATATGTGTACACATCTCAGCCAGAAAGTTATGCCTCATCAAAGGAGCATATTGAACCTTCCCAATCCAATTTTCTCTCAAGTCCTACCTCAAATTCTAGTTTCTGTACTTCTTGTATCCTTGGCATCGATATCCAAATCACTCTGAAAATTGTAATGGCACTCACTTTTATTTCCTCACTTTCCATTCAGTCCTTAACCTCATCTTCTTCTAATTCAAAGACTTATCCAACCCGTCAGCAATCCCTCTCCAGACCCTTTTCCATGGTATGCCAGATAGACCCTAACAGACACAATTTTCAAGATGGTTCCCACAAGCAATGCATGACCATTAGAGAAGGGTCCAAGAATTGGAAAAACATAGTTTCAGTAGCCTTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCGGATTTGAGTGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCAGTTCTCACTCGAAGTGATCTTGGTGGTGCCCTAATCGAAGGCGCTGATTTCAGTGACGCTGTCTTGGACCTCACCCAGAAGCAGGCTCTCTGCAAGTATGCAAGTGGCACGAACCCAACTACAGGGGTGAGCACAAGATCAAGCCTAGGTTGCGGGAACAGTCGACGAAATGCTTATGGCTCTCCCTCATCCCCTCTGTTAAGCGCTCCACCTCAGAAACTACTTAATCGGGATGGATTCTGTGATCAAGAAACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

351

Amino Acids

37.72

Weight (kDa)

6.89

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	180 - 219	1.5e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	205 - 242	8.7e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	806
AccB7I	CCANNNNNTGG	1 cut(s)	408
AccI	GTMKAC	1 cut(s)	943
AciI	CCGC	3 cut(s)	474, 704, 933
AclWI	GGATC	2 cut(s)	538, 735
AcsI	RAATTY	3 cut(s)	151, 518, 586
AcuI	CTGAAG	1 cut(s)	442
AdeI	CACNNNGTG	1 cut(s)	515
AfaI	GTAC	3 cut(s)	68, 166, 573
AfeI	AGCGCT	1 cut(s)	985
AfiI	CCNNNNNNNGG	3 cut(s)	408, 862, 902
AflIII	ACRYGT	1 cut(s)	574
AgsI	TTSAA	6 cut(s)	113, 276, 359, 500, 645, 652
AjnI	CCWGG	1 cut(s)	511
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AleI	CACNNNNGTG	1 cut(s)	62
AluBI	AGCT	4 cut(s)	456, 462, 674, 749
AluI	AGCT	4 cut(s)	456, 462, 674, 749
Alw21I	GWGCWC	1 cut(s)	914
AlwI	GGATC	2 cut(s)	538, 735
Aor51HI	AGCGCT	1 cut(s)	985
ApeKI	GCWGC	2 cut(s)	443, 536
ApoI	RAATTY	3 cut(s)	151, 518, 586
AspA2I	CCTAGG	1 cut(s)	925
AspLEI	GCGC	2 cut(s)	824, 986
AspS9I	GGNCC	3 cut(s)	399, 736, 847
AsuHPI	GGTGA	3 cut(s)	527, 844, 919
AvaII	GGWCC	3 cut(s)	399, 736, 847
AvrII	CCTAGG	1 cut(s)	925
AxyI	CCTNAGG	1 cut(s)	560
BaeGI	GKGCMC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	806
Bbv12I	GWGCWC	1 cut(s)	914
BbvI	GCAGC	2 cut(s)	430, 548
BccI	CCATC	3 cut(s)	356, 718, 1007
BciT130I	CCWGG	1 cut(s)	513
BciVI	GTATCC	1 cut(s)	185
BclI	TGATCA	1 cut(s)	1024
BfaI	CTAG	2 cut(s)	156, 926
BfmI	CTRYAG	4 cut(s)	444, 552, 675, 900
BfoI	RGCGCY	2 cut(s)	825, 987
BfuI	GTATCC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	444, 537
BlnI	CCTAGG	1 cut(s)	925
BlsI	GCNGC	2 cut(s)	445, 538
Bme1390I	CCNGG	1 cut(s)	513
Bme18I	GGWCC	3 cut(s)	399, 736, 847
BmgT120I	GGNCC	3 cut(s)	399, 736, 847
BmiI	GGNNCC	3 cut(s)	367, 400, 808
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	2 cut(s)	192, 751
BpmI	CTGGAG	1 cut(s)	292
BpuEI	CTTGAG	3 cut(s)	121, 686, 740
Bsa29I	ATCGAT	1 cut(s)	186
BsaJI	CCNNGG	4 cut(s)	178, 321, 432, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 862, 902
Bse1I	ACTGG	1 cut(s)	1039
Bse21I	CCTNAGG	1 cut(s)	560
Bse3DI	GCAATG	2 cut(s)	383, 477
BseBI	CCWGG	1 cut(s)	513
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	178, 321, 432, 925
BseGI	GGATG	3 cut(s)	766, 968, 1018
BseLI	CCNNNNNNNGG	3 cut(s)	408, 862, 902
BseMI	GCAATG	2 cut(s)	383, 477
BseMII	CTCAG	3 cut(s)	89, 574, 1007
BseNI	ACTGG	1 cut(s)	1039
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	2 cut(s)	430, 548
BshNI	GGYRCC	1 cut(s)	806
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	914
BslI	CCNNNNNNNGG	3 cut(s)	408, 862, 902
Bsp1286I	GDGCHC	2 cut(s)	811, 914
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
Bsp19I	CCATGG	1 cut(s)	321
BspACI	CCGC	3 cut(s)	474, 704, 933
BspCNI	CTCAG	3 cut(s)	88, 573, 1006
BspDI	ATCGAT	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	367, 400, 808
BspMAI	CTGCAG	2 cut(s)	448, 556
BspPI	GGATC	2 cut(s)	538, 735
BspT107I	GGYRCC	1 cut(s)	806
BsrDI	GCAATG	2 cut(s)	383, 477
BsrGI	TGTACA	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	1039
BssECI	CCNNGG	4 cut(s)	178, 321, 432, 925
BssMI	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
BssT1I	CCWWGG	4 cut(s)	178, 321, 432, 925
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	1 cut(s)	941
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	3 cut(s)	470, 474, 864
BstDEI	CTNAG	3 cut(s)	75, 560, 993
BstDSI	CCRYGG	1 cut(s)	321
BstF5I	GGATG	3 cut(s)	766, 968, 1018
BstH2I	RGCGCY	2 cut(s)	825, 987
BstHHI	GCGC	2 cut(s)	824, 986
BstKTI	GATC	6 cut(s)	533, 730, 779, 799, 920, 1027
BstMBI	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	443, 686, 695, 930
BstNI	CCWGG	1 cut(s)	513
BstNSI	RCATGY	2 cut(s)	472, 578
BstSCI	CCNGG	1 cut(s)	511
BstSFI	CTRYAG	4 cut(s)	444, 552, 675, 900
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	2 cut(s)	430, 548
Bsu15I	ATCGAT	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	185
BsuTUI	ATCGAT	1 cut(s)	186
BtgI	CCRYGG	1 cut(s)	321
BtsCI	GGATG	3 cut(s)	766, 968, 1018
BtsIMutI	CAGTG	2 cut(s)	643, 838
Cac8I	GCNNGC	3 cut(s)	470, 474, 864
CfoI	GCGC	2 cut(s)	824, 986
Cfr13I	GGNCC	3 cut(s)	399, 736, 847
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	1 cut(s)	845
CsiI	ACCWGGT	1 cut(s)	511
Csp6I	GTAC	3 cut(s)	67, 165, 572
CviAII	CATG	4 cut(s)	322, 382, 469, 575
CviQI	GTAC	3 cut(s)	67, 165, 572
DdeI	CTNAG	3 cut(s)	75, 560, 993
DpnI	GATC	6 cut(s)	532, 729, 778, 798, 919, 1026
DpnII	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
DraIII	CACNNNGTG	1 cut(s)	515
Eco130I	CCWWGG	4 cut(s)	178, 321, 432, 925
Eco32I	GATATC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	399, 736, 847
Eco47III	AGCGCT	1 cut(s)	985
Eco57I	CTGAAG	1 cut(s)	442
Eco81I	CCTNAGG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	511
EcoRV	GATATC	1 cut(s)	190
EcoT14I	CCWWGG	4 cut(s)	178, 321, 432, 925
EcoT22I	ATGCAT	1 cut(s)	383
ErhI	CCWWGG	4 cut(s)	178, 321, 432, 925
FaeI	CATG	4 cut(s)	325, 385, 472, 578
FatI	CATG	4 cut(s)	321, 381, 468, 574
FauI	CCCGC	2 cut(s)	481, 926
FauNDI	CATATG	1 cut(s)	61
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	1 cut(s)	943
Fnu4HI	GCNGC	2 cut(s)	444, 537
FokI	GGATG	3 cut(s)	773, 955, 1025
Fsp4HI	GCNGC	2 cut(s)	444, 537
FspBI	CTAG	2 cut(s)	156, 926
GlaI	GCGC	2 cut(s)	823, 985
GluI	GCNGC	2 cut(s)	444, 537
GsuI	CTGGAG	1 cut(s)	292
HaeII	RGCGCY	2 cut(s)	825, 987
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	2 cut(s)	824, 986
Hin1II	CATG	4 cut(s)	325, 385, 472, 578
Hin6I	GCGC	2 cut(s)	822, 984
HinP1I	GCGC	2 cut(s)	822, 984
HincII	GTYRAC	1 cut(s)	944
HindII	GTYRAC	1 cut(s)	944
HinfI	GANTC	2 cut(s)	626, 1017
HphI	GGTGA	3 cut(s)	527, 844, 919
Hpy166II	GTNNAC	3 cut(s)	67, 69, 944
Hpy188I	TCNGA	3 cut(s)	204, 631, 996
Hpy188III	TCNNGA	6 cut(s)	309, 359, 562, 592, 1010, 1028
Hpy8I	GTNNAC	3 cut(s)	67, 69, 944
Hpy99I	CGWCG	1 cut(s)	948
HpyAV	CCTTC	3 cut(s)	126, 389, 812
HpyCH4III	ACNGT	1 cut(s)	941
HpyCH4V	TGCA	7 cut(s)	381, 446, 482, 554, 659, 873, 881
HpyF10VI	GCNNNNNNNGC	4 cut(s)	443, 686, 695, 930
HpyF3I	CTNAG	3 cut(s)	75, 560, 993
Hsp92II	CATG	4 cut(s)	325, 385, 472, 578
HspAI	GCGC	2 cut(s)	822, 984
Ksp22I	TGATCA	1 cut(s)	1024
Kzo9I	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
LmnI	GCTCC	2 cut(s)	103, 991
Lsp1109I	GCAGC	2 cut(s)	430, 548
LweI	GCATC	2 cut(s)	192, 751
MabI	ACCWGGT	1 cut(s)	511
MaeI	CTAG	2 cut(s)	156, 926
MaeIII	GTNAC	2 cut(s)	713, 833
MalI	GATC	6 cut(s)	532, 729, 778, 798, 919, 1026
MboI	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
MboII	GAAGA	2 cut(s)	255, 258
MhlI	GDGCHC	2 cut(s)	811, 914
MmeI	TCCRAC	1 cut(s)	311
Mph1103I	ATGCAT	1 cut(s)	383
MseI	TTAA	4 cut(s)	254, 741, 980, 1005
MslI	CAYNNNNRTG	3 cut(s)	62, 579, 722
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	4 cut(s)	443, 686, 695, 930
NcoI	CCATGG	1 cut(s)	321
NdeI	CATATG	1 cut(s)	61
NdeII	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
NlaIII	CATG	4 cut(s)	325, 385, 472, 578
NlaIV	GGNNCC	3 cut(s)	367, 400, 808
NmuCI	GTSAC	2 cut(s)	713, 833
NsiI	ATGCAT	1 cut(s)	383
NspI	RCATGY	2 cut(s)	472, 578
OliI	CACNNNNGTG	1 cut(s)	62
PaeI	GCATGC	1 cut(s)	472
PciI	ACATGT	1 cut(s)	574
PfeI	GAWTC	2 cut(s)	626, 1017
PflFI	GACNNNGTC	1 cut(s)	839
PflMI	CCANNNNNTGG	1 cut(s)	408
PkrI	GCNGC	2 cut(s)	445, 538
PscI	ACATGT	1 cut(s)	574
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	3 cut(s)	367, 400, 808
PspPI	GGNCC	3 cut(s)	399, 736, 847
PstI	CTGCAG	2 cut(s)	448, 556
PsyI	GACNNNGTC	1 cut(s)	839
RsaI	GTAC	3 cut(s)	68, 166, 573
RsaNI	GTAC	3 cut(s)	67, 165, 572
RseI	CAYNNNNRTG	3 cut(s)	62, 579, 722
SalI	GTCGAC	1 cut(s)	942
SaqAI	TTAA	4 cut(s)	254, 741, 980, 1005
SatI	GCNGC	2 cut(s)	444, 537
Sau3AI	GATC	6 cut(s)	530, 727, 776, 796, 917, 1024
Sau96I	GGNCC	3 cut(s)	399, 736, 847
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	2 cut(s)	811, 914
SexAI	ACCWGGT	1 cut(s)	511
SfaNI	GCATC	2 cut(s)	192, 751
SfcI	CTRYAG	4 cut(s)	444, 552, 675, 900
SinI	GGWCC	3 cut(s)	399, 736, 847
SmiMI	CAYNNNNRTG	3 cut(s)	62, 579, 722
SmlI	CTYRAG	3 cut(s)	136, 665, 755
SmoI	CTYRAG	3 cut(s)	136, 665, 755
SphI	GCATGC	1 cut(s)	472
SsiI	CCGC	3 cut(s)	474, 704, 933
SspMI	CTAG	2 cut(s)	156, 926
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	4 cut(s)	178, 321, 432, 925
TaaI	ACNGT	1 cut(s)	941
TaqI	TCGA	4 cut(s)	186, 790, 816, 943
TatI	WGTACW	3 cut(s)	66, 164, 571
TfiI	GAWTC	2 cut(s)	626, 1017
Tru1I	TTAA	4 cut(s)	254, 741, 980, 1005
Tru9I	TTAA	4 cut(s)	254, 741, 980, 1005
TscAI	CASTG	2 cut(s)	643, 838
TseFI	GTSAC	2 cut(s)	713, 833
TseI	GCWGC	2 cut(s)	443, 536
Tsp45I	GTSAC	2 cut(s)	713, 833
TspDTI	ATGAA	2 cut(s)	597, 759
TspRI	CASTG	2 cut(s)	643, 838
Tth111I	GACNNNGTC	1 cut(s)	839
Van91I	CCANNNNNTGG	1 cut(s)	408
VpaK11BI	GGWCC	3 cut(s)	399, 736, 847
XapI	RAATTY	3 cut(s)	151, 518, 586
XceI	RCATGY	2 cut(s)	472, 578
XmaJI	CCTAGG	1 cut(s)	925
XmiI	GTMKAC	1 cut(s)	943
XspI	CTAG	2 cut(s)	156, 926
Zsp2I	ATGCAT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.