Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

18572206 .. 18575005

Gene Structure 2800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG207600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGTGTACACATCTCAGCCAGAAAGTTCATGCCTCATCAAAGGAGCATATTGAACCTTCCCAATCCAATTTTCTCTCAAGTCCTACCTCAAATTCTAGTTTCTGTACTTCTTGGATCCTTGGCATCTATATCCAAATCACTCTGAAAATTGTAATGGCACTCACTTTTATTTCCTCACTTTCCATTCAGTCCTTAACCTCATCTTCTTCGAATTCAAAGACTTATCCAACCCGTCAGCAATCCCTCTCCAGACCCTTTTCCATGGTATGCCAGATAGACCCTAGCAGACACAATTTTCAAGATGGTTCCCACAAGCAATGCATGACCATTAGAGGAGGGTCCAAGAATTGGAAAAACATGGTTTCAGTAGCCTTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGTCACATTTATTTATTTTAAGTTTGTATACTCTAAGCTTTTCTGGGTTGTATGTAGAAGGTTTAAATTCTGTTCCAATCTTGATTTACAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCCGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTAAGCTTGTTGTCACCGAACATCTTATTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

254

Amino Acids

27.78

Weight (kDa)

9.05

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	203 - 229	7.1e-06	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	206 - 242	4.7e-07	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	348
AccI	GTMKAC	1 cut(s)	530
AciI	CCGC	1 cut(s)	414
AclWI	GGATC	3 cut(s)	109, 122, 478
AcsI	RAATTY	5 cut(s)	91, 211, 458, 568, 616
AcuI	CTGAAG	1 cut(s)	382
AdeI	CACNNNGTG	1 cut(s)	455
AfaI	GTAC	3 cut(s)	7, 106, 603
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	53, 216, 299, 440, 675, 682
AhdI	GACNNNNNGTC	1 cut(s)	502
AjnI	CCWGG	1 cut(s)	451
AjuI	GAANNNNNNNTTGG	2 cut(s)	54, 86
AluBI	AGCT	5 cut(s)	396, 402, 540, 704, 736
AluI	AGCT	5 cut(s)	396, 402, 540, 704, 736
AlwI	GGATC	3 cut(s)	109, 122, 478
ApeKI	GCWGC	2 cut(s)	383, 476
ApoI	RAATTY	5 cut(s)	91, 211, 458, 568, 616
AspS9I	GGNCC	1 cut(s)	339
AsuHPI	GGTGA	2 cut(s)	467, 736
AsuII	TTCGAA	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	339
AxyI	CCTNAGG	1 cut(s)	500
BamHI	GGATCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	370, 488
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	453
BfaI	CTAG	2 cut(s)	96, 282
BfmI	CTRYAG	3 cut(s)	384, 492, 705
BisI	GCNGC	2 cut(s)	384, 477
BlsI	GCNGC	2 cut(s)	385, 478
Bme1390I	CCNGG	1 cut(s)	453
Bme18I	GGWCC	1 cut(s)	339
BmeRI	GACNNNNNGTC	1 cut(s)	502
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	3 cut(s)	116, 307, 340
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	232
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	2 cut(s)	61, 716
BsaJI	CCNNGG	3 cut(s)	118, 261, 372
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse21I	CCTNAGG	1 cut(s)	500
Bse3DI	GCAATG	2 cut(s)	323, 417
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	118, 261, 372
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMI	GCAATG	2 cut(s)	323, 417
BseMII	CTCAG	2 cut(s)	28, 514
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	370, 488
BslI	CCNNNNNNNGG	1 cut(s)	348
Bsp119I	TTCGAA	1 cut(s)	209
Bsp1407I	TGTACA	1 cut(s)	5
Bsp143I	GATC	2 cut(s)	114, 470
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	1 cut(s)	414
BspCNI	CTCAG	2 cut(s)	27, 513
BspLI	GGNNCC	3 cut(s)	116, 307, 340
BspMAI	CTGCAG	2 cut(s)	388, 496
BspPI	GGATC	3 cut(s)	109, 122, 478
BspT104I	TTCGAA	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	323, 417
BsrGI	TGTACA	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	118, 261, 372
BssMI	GATC	2 cut(s)	114, 470
BssNAI	GTATAC	1 cut(s)	531
BssT1I	CCWWGG	3 cut(s)	118, 261, 372
Bst1107I	GTATAC	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	453
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstAUI	TGTACA	1 cut(s)	5
BstBI	TTCGAA	1 cut(s)	209
BstC8I	GCNNGC	2 cut(s)	410, 414
BstDEI	CTNAG	3 cut(s)	14, 500, 536
BstDSI	CCRYGG	1 cut(s)	261
BstKTI	GATC	2 cut(s)	117, 473
BstMBI	GATC	2 cut(s)	114, 470
BstMWI	GCNNNNNNNGC	3 cut(s)	383, 716, 725
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	2 cut(s)	412, 608
BstSCI	CCNGG	1 cut(s)	451
BstSFI	CTRYAG	3 cut(s)	384, 492, 705
BstV1I	GCAGC	2 cut(s)	370, 488
BstX2I	RGATCY	1 cut(s)	114
BstYI	RGATCY	1 cut(s)	114
BstZ17I	GTATAC	1 cut(s)	531
Bsu36I	CCTNAGG	1 cut(s)	500
BtgI	CCRYGG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	673
Cac8I	GCNNGC	2 cut(s)	410, 414
Cfr13I	GGNCC	1 cut(s)	339
CsiI	ACCWGGT	1 cut(s)	451
Csp6I	GTAC	3 cut(s)	6, 105, 602
CviAII	CATG	6 cut(s)	29, 262, 322, 358, 409, 605
CviQI	GTAC	3 cut(s)	6, 105, 602
DdeI	CTNAG	3 cut(s)	14, 500, 536
DpnI	GATC	2 cut(s)	116, 472
DpnII	GATC	2 cut(s)	114, 470
DraI	TTTAAA	1 cut(s)	567
DraIII	CACNNNGTG	1 cut(s)	455
DriI	GACNNNNNGTC	1 cut(s)	502
Eam1105I	GACNNNNNGTC	1 cut(s)	502
Eco130I	CCWWGG	3 cut(s)	118, 261, 372
Eco47I	GGWCC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	382
Eco81I	CCTNAGG	1 cut(s)	500
EcoRI	GAATTC	1 cut(s)	211
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	3 cut(s)	118, 261, 372
EcoT22I	ATGCAT	1 cut(s)	323
ErhI	CCWWGG	3 cut(s)	118, 261, 372
FaeI	CATG	6 cut(s)	32, 265, 325, 361, 412, 608
FatI	CATG	6 cut(s)	28, 261, 321, 357, 408, 604
FauI	CCCGC	1 cut(s)	421
FblI	GTMKAC	1 cut(s)	530
Fnu4HI	GCNGC	2 cut(s)	384, 477
Fsp4HI	GCNGC	2 cut(s)	384, 477
FspBI	CTAG	2 cut(s)	96, 282
GluI	GCNGC	2 cut(s)	384, 477
GsuI	CTGGAG	1 cut(s)	232
Hin1II	CATG	6 cut(s)	32, 265, 325, 361, 412, 608
HindIII	AAGCTT	2 cut(s)	538, 734
HinfI	GANTC	1 cut(s)	656
HphI	GGTGA	2 cut(s)	467, 736
Hpy166II	GTNNAC	3 cut(s)	6, 8, 531
Hpy188I	TCNGA	2 cut(s)	144, 661
Hpy188III	TCNNGA	4 cut(s)	249, 299, 583, 622
Hpy8I	GTNNAC	3 cut(s)	6, 8, 531
HpyAV	CCTTC	2 cut(s)	66, 554
HpyCH4V	TGCA	5 cut(s)	321, 386, 422, 494, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	383, 716, 725
HpyF3I	CTNAG	3 cut(s)	14, 500, 536
Hsp92II	CATG	6 cut(s)	32, 265, 325, 361, 412, 608
Kzo9I	GATC	2 cut(s)	114, 470
LmnI	GCTCC	1 cut(s)	43
Lsp1109I	GCAGC	2 cut(s)	370, 488
LweI	GCATC	1 cut(s)	132
MabI	ACCWGGT	1 cut(s)	451
MaeI	CTAG	2 cut(s)	96, 282
MaeIII	GTNAC	2 cut(s)	504, 742
MalI	GATC	2 cut(s)	116, 472
MboI	GATC	2 cut(s)	114, 470
MboII	GAAGA	2 cut(s)	195, 198
MflI	RGATCY	1 cut(s)	114
MmeI	TCCRAC	1 cut(s)	251
Mph1103I	ATGCAT	1 cut(s)	323
MseI	TTAA	3 cut(s)	194, 521, 566
MslI	CAYNNNNRTG	1 cut(s)	609
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	383, 716, 725
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	2 cut(s)	114, 470
NlaIII	CATG	6 cut(s)	32, 265, 325, 361, 412, 608
NlaIV	GGNNCC	3 cut(s)	116, 307, 340
NmuCI	GTSAC	2 cut(s)	504, 742
NsiI	ATGCAT	1 cut(s)	323
NspI	RCATGY	2 cut(s)	412, 608
NspV	TTCGAA	1 cut(s)	209
PaeI	GCATGC	1 cut(s)	412
PciI	ACATGT	1 cut(s)	604
PfeI	GAWTC	1 cut(s)	656
PflMI	CCANNNNNTGG	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	385, 478
PscI	ACATGT	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	451
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	3 cut(s)	116, 307, 340
PspPI	GGNCC	1 cut(s)	339
PstI	CTGCAG	2 cut(s)	388, 496
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	3 cut(s)	7, 106, 603
RsaNI	GTAC	3 cut(s)	6, 105, 602
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	194, 521, 566
SatI	GCNGC	2 cut(s)	384, 477
Sau3AI	GATC	2 cut(s)	114, 470
Sau96I	GGNCC	1 cut(s)	339
ScrFI	CCNGG	1 cut(s)	453
SexAI	ACCWGGT	1 cut(s)	451
SfaNI	GCATC	1 cut(s)	132
SfcI	CTRYAG	3 cut(s)	384, 492, 705
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	1 cut(s)	339
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	76, 695
SmoI	CTYRAG	2 cut(s)	76, 695
SphI	GCATGC	1 cut(s)	412
SsiI	CCGC	1 cut(s)	414
SspMI	CTAG	2 cut(s)	96, 282
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	3 cut(s)	118, 261, 372
TaqI	TCGA	1 cut(s)	209
TatI	WGTACW	3 cut(s)	5, 104, 601
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	3 cut(s)	194, 521, 566
Tru9I	TTAA	3 cut(s)	194, 521, 566
TscAI	CASTG	1 cut(s)	673
TseFI	GTSAC	2 cut(s)	504, 742
TseI	GCWGC	2 cut(s)	383, 476
Tsp45I	GTSAC	2 cut(s)	504, 742
TspDTI	ATGAA	2 cut(s)	17, 627
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	348
VpaK11BI	GGWCC	1 cut(s)	339
XapI	RAATTY	5 cut(s)	91, 211, 458, 568, 616
XceI	RCATGY	2 cut(s)	412, 608
XmiI	GTMKAC	1 cut(s)	530
XspI	CTAG	2 cut(s)	96, 282
Zsp2I	ATGCAT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.