Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Reverse (-)

5242239 .. 5243644

Gene Structure 1406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0069100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGAGCTTACTTTGGAATCAGTCATGGGAAACTACATAGAAAGATGGTGTGATGAGCATAATAGTTTGATTGTTGTAGAAGATGACAACAAGAGCACAGAAATTGTTGAAGCATTGGAAAAGACCATGAGCGCTAAGCTTCGCAGTGATTCACCCTTGTCTGCTAAGTGCTGCATCTTCAGAGTTCCCGAGGTGCTGCGAAGACATAAACCAGAGGCTTATCAACCTGATGTTGTTTCAATTGGACCTTTTCACAGAGGTGGAAAACAATTTCAGCTAATGGAAGATGTAAAACAATGGTATTTACATAACCTTCTCTTGCGTCTGAATATAAATATGAAAACTTTGATCCAAGGCATTGATAATGTTGTTGAATTTGAGAAACGTGCACAACTAGCAATTGGAGAGTTGACTGAACCATTGTTCCGGAACCTCATTGCCTTTGAACAATGTTATCATGGCCGCTCGCATAAGATCACATCTTATGCCCTGTTAATGAATTACCTCATCAGCTCCAGCAAGGATATGGATTTCCTTTGCGACAAAGGAATAATGGTTAATTGGTTGAACTCTGAAGATGCTTCCCAATTTTTCAACAAGCTTTACAATGACACTGTTCTCAAGCAATTCTACTATGGTGGACTCTGTGCTGAAGTGAATAGATATTACAAAGTTACATGGAACAAGTGGCTGGAAAAATTGAAGCGTGATTATTTATGTAATCCATGGAAAATTACTTCTTTGGTTGCAGCCTTCATCCTTCTGGTTCTCACCCTATTGCAAACCACATACACCATTCTGGAATACTATTATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

272

Amino Acids

31.93

Weight (kDa)

6.33

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	59 - 123	1e-15	Plant protein of unknown function
DUF247	PF03140	131 - 257	4.2e-40	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	465
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	1 cut(s)	463
AclWI	GGATC	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	460
AcsI	RAATTY	1 cut(s)	374
AcuI	CTGAAG	3 cut(s)	163, 594, 672
AfeI	AGCGCT	1 cut(s)	133
AgsI	TTSAA	7 cut(s)	110, 240, 374, 446, 568, 595, 703
AleI	CACNNNNGTG	1 cut(s)	258
AloI	GAACNNNNNNTCC	2 cut(s)	408, 440
AluBI	AGCT	5 cut(s)	7, 139, 277, 513, 601
AluI	AGCT	5 cut(s)	7, 139, 277, 513, 601
Alw21I	GWGCWC	2 cut(s)	98, 391
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	343
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	426
Aor51HI	AGCGCT	1 cut(s)	133
AoxI	GGCC	1 cut(s)	460
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	3 cut(s)	171, 196, 749
ApoI	RAATTY	1 cut(s)	374
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	245
AsuHPI	GGTGA	2 cut(s)	144, 763
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	208
Bbv12I	GWGCWC	2 cut(s)	98, 391
BbvI	GCAGC	3 cut(s)	158, 183, 761
BccI	CCATC	1 cut(s)	39
BfaI	CTAG	1 cut(s)	395
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	4 cut(s)	172, 197, 463, 750
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	4 cut(s)	173, 198, 464, 751
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	431
BmsI	GCATC	2 cut(s)	183, 568
BpiI	GAAGAC	1 cut(s)	208
BpmI	CTGGAG	1 cut(s)	499
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	605
BsaJI	CCNNGG	3 cut(s)	189, 352, 725
BsaWI	WCCGGW	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	435
BseAI	TCCGGA	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	189, 352, 725
BseGI	GGATG	1 cut(s)	756
BseMI	GCAATG	1 cut(s)	435
BseSI	GKGCMC	1 cut(s)	391
BseXI	GCAGC	3 cut(s)	158, 183, 761
BshFI	GGCC	1 cut(s)	462
BsiHKAI	GWGCWC	2 cut(s)	98, 391
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	427
BsnI	GGCC	1 cut(s)	462
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	2 cut(s)	98, 391
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	348, 474
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	725
BspACI	CCGC	1 cut(s)	463
BspANI	GGCC	1 cut(s)	462
BspEI	TCCGGA	1 cut(s)	426
BspLI	GGNNCC	1 cut(s)	431
BspPI	GGATC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	465
BsrDI	GCAATG	1 cut(s)	435
BssECI	CCNNGG	3 cut(s)	189, 352, 725
BssMI	GATC	2 cut(s)	348, 474
BssT1I	CCWWGG	2 cut(s)	352, 725
Bst4CI	ACNGT	1 cut(s)	616
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	2 cut(s)	135, 165
BstDSI	CCRYGG	1 cut(s)	725
BstF5I	GGATG	1 cut(s)	756
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	351, 477
BstMBI	GATC	2 cut(s)	348, 474
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	3 cut(s)	158, 183, 761
BstV2I	GAAGAC	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	725
BtsCI	GGATG	1 cut(s)	756
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	151, 612
Cac8I	GCNNGC	1 cut(s)	467
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	245
CseI	GACGC	1 cut(s)	311
CviAII	CATG	5 cut(s)	25, 127, 458, 678, 726
CviJI	RGCY	9 cut(s)	7, 139, 218, 277, 462, 513, 601, 691, 752
CviKI_1	RGCY	9 cut(s)	7, 139, 218, 277, 462, 513, 601, 691, 752
DdeI	CTNAG	2 cut(s)	135, 165
DpnI	GATC	2 cut(s)	350, 476
DpnII	GATC	2 cut(s)	348, 474
EaeI	YGGCCR	1 cut(s)	460
Eco130I	CCWWGG	2 cut(s)	352, 725
Eco47I	GGWCC	1 cut(s)	245
Eco47III	AGCGCT	1 cut(s)	133
Eco57I	CTGAAG	3 cut(s)	163, 594, 672
Eco88I	CYCGRG	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	352, 725
ErhI	CCWWGG	2 cut(s)	352, 725
FaeI	CATG	5 cut(s)	28, 130, 461, 681, 729
FatI	CATG	5 cut(s)	24, 126, 457, 677, 725
Fnu4HI	GCNGC	4 cut(s)	172, 197, 463, 750
FokI	GGATG	1 cut(s)	743
Fsp4HI	GCNGC	4 cut(s)	172, 197, 463, 750
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	4 cut(s)	172, 197, 463, 750
GsuI	CTGGAG	1 cut(s)	499
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	462
HapII	CCGG	1 cut(s)	427
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	5 cut(s)	28, 130, 461, 681, 729
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	411
HindII	GTYRAC	1 cut(s)	411
HindIII	AAGCTT	2 cut(s)	137, 599
HinfI	GANTC	3 cut(s)	17, 149, 642
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	144, 763
Hpy166II	GTNNAC	3 cut(s)	389, 411, 641
Hpy188I	TCNGA	3 cut(s)	182, 327, 574
Hpy188III	TCNNGA	3 cut(s)	188, 427, 800
Hpy8I	GTNNAC	3 cut(s)	389, 411, 641
HpyAV	CCTTC	3 cut(s)	323, 763, 770
HpyCH4III	ACNGT	1 cut(s)	616
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	174, 389, 749, 781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	2 cut(s)	135, 165
HpySE526I	ACGT	1 cut(s)	385
Hsp92II	CATG	5 cut(s)	28, 130, 461, 681, 729
HspAI	GCGC	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	348, 474
LmnI	GCTCC	2 cut(s)	4, 518
LpnPI	CCDG	8 cut(s)	225, 240, 440, 503, 529, 677, 749, 785
Lsp1109I	GCAGC	3 cut(s)	158, 183, 761
LweI	GCATC	2 cut(s)	183, 568
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	2 cut(s)	350, 476
MbiI	CCGCTC	1 cut(s)	465
MboI	GATC	2 cut(s)	348, 474
MboII	GAAGA	5 cut(s)	92, 169, 213, 296, 587
MfeI	CAATTG	2 cut(s)	240, 399
MhlI	GDGCHC	2 cut(s)	98, 391
MlyI	GAGTC	1 cut(s)	636
MnlI	CCTC	5 cut(s)	184, 208, 251, 443, 515
MroI	TCCGGA	1 cut(s)	426
MseI	TTAA	2 cut(s)	494, 558
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	427
MunI	CAATTG	2 cut(s)	240, 399
MwoI	GCNNNNNNNGC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	725
NdeII	GATC	2 cut(s)	348, 474
NlaIII	CATG	5 cut(s)	28, 130, 461, 681, 729
NlaIV	GGNNCC	1 cut(s)	431
OliI	CACNNNNGTG	1 cut(s)	258
PfeI	GAWTC	2 cut(s)	17, 149
PkrI	GCNGC	4 cut(s)	173, 198, 464, 751
PleI	GAGTC	1 cut(s)	636
PpsI	GAGTC	1 cut(s)	636
PspN4I	GGNNCC	1 cut(s)	431
PspPI	GGNCC	1 cut(s)	245
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	494, 558
SatI	GCNGC	4 cut(s)	172, 197, 463, 750
Sau3AI	GATC	2 cut(s)	348, 474
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	98, 391
SfaNI	GCATC	2 cut(s)	183, 568
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
SsiI	CCGC	1 cut(s)	463
SspMI	CTAG	1 cut(s)	395
StyI	CCWWGG	2 cut(s)	352, 725
TaaI	ACNGT	1 cut(s)	616
TaiI	ACGT	1 cut(s)	388
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	2 cut(s)	17, 149
Tru1I	TTAA	2 cut(s)	494, 558
Tru9I	TTAA	2 cut(s)	494, 558
TscAI	CASTG	2 cut(s)	151, 619
TseI	GCWGC	3 cut(s)	171, 196, 749
TspDTI	ATGAA	3 cut(s)	353, 512, 745
TspRI	CASTG	2 cut(s)	151, 619
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	374
XcmI	CCANNNNNNNNNTGG	1 cut(s)	523
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.