Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Forward (+)

49038998 .. 49041695

Gene Structure 2698 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00254730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCACTCACTTTTGTTTCCTCACTTTCCGTTCAGTCCTTAACCTCGTCTTCTTCGAATTCAAAGACTCATCCAACCCGTCAGCAATCCCTCTCCAGACCCTTTTCCATGGTATGCCAGATAGACCCTAACAGACACAATTTTCAAGGAAGATGGTTCCCACAAGGCCACAAGCAATGCATGACCATTAGAGAAGGGTCCAAGAATTGGAAAAACATTGTTTCAGTAGCATTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCGGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCAGTTCTCACTCGAAGTGATCTTGGTGGCGCCCTAATCGAAGGCGCTGATTTCAGTGACGCCGTTTTGGACCTCTCCCAGAAGCAGGCTCTCTGCAAGTATGCGAATGGCACAAACCCAACTACAGGGGTGAGCACAAGAACAAGCCTAGGTTGCGGGAACAGTCGACGAAATGCTTATGGCTCTCCCTCATCCCCTCTGTTAAGCGCTCCACCTCAGAAACTACTTGACCGGGATGGATTCTGTGATCAAGAAACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

284

Amino Acids

30.53

Weight (kDa)

8.2

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	113 - 152	1.1e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	138 - 175	6.5e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	605
AccB7I	CCANNNNNTGG	1 cut(s)	207
AccI	GTMKAC	1 cut(s)	742
AciI	CCGC	3 cut(s)	273, 503, 732
AclWI	GGATC	2 cut(s)	337, 534
AcsI	RAATTY	3 cut(s)	58, 317, 385
AcuI	CTGAAG	1 cut(s)	241
AcyI	GRCGYC	2 cut(s)	606, 636
AdeI	CACNNNGTG	1 cut(s)	314
AfaI	GTAC	1 cut(s)	372
AfeI	AGCGCT	1 cut(s)	784
AfiI	CCNNNNNNNGG	3 cut(s)	207, 661, 701
AflIII	ACRYGT	1 cut(s)	373
AgsI	TTSAA	5 cut(s)	63, 146, 299, 444, 451
AjnI	CCWGG	1 cut(s)	310
AluBI	AGCT	4 cut(s)	255, 261, 473, 548
AluI	AGCT	4 cut(s)	255, 261, 473, 548
Alw21I	GWGCWC	1 cut(s)	713
AlwI	GGATC	2 cut(s)	337, 534
Aor51HI	AGCGCT	1 cut(s)	784
AoxI	GGCC	1 cut(s)	166
ApeKI	GCWGC	2 cut(s)	242, 335
ApoI	RAATTY	3 cut(s)	58, 317, 385
AspA2I	CCTAGG	1 cut(s)	724
AspLEI	GCGC	3 cut(s)	608, 623, 785
AspS9I	GGNCC	3 cut(s)	198, 535, 646
AsuC2I	CCSGG	1 cut(s)	809
AsuHPI	GGTGA	2 cut(s)	326, 718
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	198, 535, 646
AvrII	CCTAGG	1 cut(s)	724
AxyI	CCTNAGG	1 cut(s)	359
BanI	GGYRCC	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	42
Bbv12I	GWGCWC	1 cut(s)	713
BbvI	GCAGC	2 cut(s)	229, 347
BccI	CCATC	3 cut(s)	147, 517, 806
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	1 cut(s)	312
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	809
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	4 cut(s)	243, 351, 474, 699
BfoI	RGCGCY	3 cut(s)	609, 624, 786
BisI	GCNGC	2 cut(s)	243, 336
BlnI	CCTAGG	1 cut(s)	724
BlsI	GCNGC	2 cut(s)	244, 337
Bme1390I	CCNGG	2 cut(s)	312, 809
Bme18I	GGWCC	3 cut(s)	198, 535, 646
BmgT120I	GGNCC	3 cut(s)	198, 535, 646
BmiI	GGNNCC	3 cut(s)	158, 199, 607
BmrFI	CCNGG	2 cut(s)	312, 809
BmsI	GCATC	1 cut(s)	550
BpiI	GAAGAC	1 cut(s)	42
BpmI	CTGGAG	1 cut(s)	79
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	485, 539
BpuMI	CCSGG	1 cut(s)	809
BsaHI	GRCGYC	2 cut(s)	606, 636
BsaJI	CCNNGG	2 cut(s)	108, 724
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 661, 701
Bse1I	ACTGG	1 cut(s)	838
Bse21I	CCTNAGG	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	182, 276
BseBI	CCWGG	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	108, 724
BseGI	GGATG	4 cut(s)	70, 565, 767, 817
BseLI	CCNNNNNNNGG	3 cut(s)	207, 661, 701
BseMI	GCAATG	2 cut(s)	182, 276
BseMII	CTCAG	2 cut(s)	373, 806
BseNI	ACTGG	1 cut(s)	838
BseXI	GCAGC	2 cut(s)	229, 347
BshFI	GGCC	1 cut(s)	168
BshNI	GGYRCC	1 cut(s)	605
BsiHKAI	GWGCWC	1 cut(s)	713
BsiSI	CCGG	1 cut(s)	808
BslI	CCNNNNNNNGG	3 cut(s)	207, 661, 701
BsnI	GGCC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	1 cut(s)	713
Bsp143I	GATC	5 cut(s)	329, 526, 575, 595, 823
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	273, 503, 732
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	2 cut(s)	372, 805
BspLI	GGNNCC	3 cut(s)	158, 199, 607
BspMAI	CTGCAG	2 cut(s)	247, 355
BspPI	GGATC	2 cut(s)	337, 534
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	605
BsrDI	GCAATG	2 cut(s)	182, 276
BsrI	ACTGG	1 cut(s)	838
BssECI	CCNNGG	2 cut(s)	108, 724
BssMI	GATC	5 cut(s)	329, 526, 575, 595, 823
BssNI	GRCGYC	2 cut(s)	606, 636
BssT1I	CCWWGG	2 cut(s)	108, 724
Bst2UI	CCWGG	1 cut(s)	312
Bst4CI	ACNGT	1 cut(s)	740
BstACI	GRCGYC	2 cut(s)	606, 636
BstAPI	GCANNNNNTGC	1 cut(s)	242
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	269, 273, 663
BstDEI	CTNAG	2 cut(s)	359, 792
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	70, 565, 767, 817
BstH2I	RGCGCY	3 cut(s)	609, 624, 786
BstHHI	GCGC	3 cut(s)	608, 623, 785
BstKTI	GATC	5 cut(s)	332, 529, 578, 598, 826
BstMBI	GATC	5 cut(s)	329, 526, 575, 595, 823
BstMWI	GCNNNNNNNGC	4 cut(s)	242, 485, 494, 729
BstNI	CCWGG	1 cut(s)	312
BstNSI	RCATGY	2 cut(s)	271, 377
BstSCI	CCNGG	2 cut(s)	310, 807
BstSFI	CTRYAG	4 cut(s)	243, 351, 474, 699
BstV1I	GCAGC	2 cut(s)	229, 347
BstV2I	GAAGAC	1 cut(s)	42
Bsu36I	CCTNAGG	1 cut(s)	359
BsuRI	GGCC	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	4 cut(s)	70, 565, 767, 817
BtsIMutI	CAGTG	2 cut(s)	442, 637
Cac8I	GCNNGC	3 cut(s)	269, 273, 663
CfoI	GCGC	3 cut(s)	608, 623, 785
Cfr13I	GGNCC	3 cut(s)	198, 535, 646
CseI	GACGC	1 cut(s)	644
CsiI	ACCWGGT	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	371
CviAII	CATG	4 cut(s)	109, 181, 268, 374
CviQI	GTAC	1 cut(s)	371
DdeI	CTNAG	2 cut(s)	359, 792
DinI	GGCGCC	1 cut(s)	607
DpnI	GATC	5 cut(s)	331, 528, 577, 597, 825
DpnII	GATC	5 cut(s)	329, 526, 575, 595, 823
DraIII	CACNNNGTG	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	108, 724
Eco47I	GGWCC	3 cut(s)	198, 535, 646
Eco47III	AGCGCT	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	241
Eco81I	CCTNAGG	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	310
EcoT14I	CCWWGG	2 cut(s)	108, 724
EcoT22I	ATGCAT	1 cut(s)	182
EgeI	GGCGCC	1 cut(s)	607
EheI	GGCGCC	1 cut(s)	607
ErhI	CCWWGG	2 cut(s)	108, 724
FaeI	CATG	4 cut(s)	112, 184, 271, 377
FatI	CATG	4 cut(s)	108, 180, 267, 373
FauI	CCCGC	2 cut(s)	280, 725
FbaI	TGATCA	1 cut(s)	823
FblI	GTMKAC	1 cut(s)	742
Fnu4HI	GCNGC	2 cut(s)	243, 336
FokI	GGATG	4 cut(s)	57, 572, 754, 824
Fsp4HI	GCNGC	2 cut(s)	243, 336
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	3 cut(s)	607, 622, 784
GluI	GCNGC	2 cut(s)	243, 336
GsuI	CTGGAG	1 cut(s)	79
HaeII	RGCGCY	3 cut(s)	609, 624, 786
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	1 cut(s)	808
HgaI	GACGC	1 cut(s)	644
HhaI	GCGC	3 cut(s)	608, 623, 785
Hin1I	GRCGYC	2 cut(s)	606, 636
Hin1II	CATG	4 cut(s)	112, 184, 271, 377
Hin6I	GCGC	3 cut(s)	606, 621, 783
HinP1I	GCGC	3 cut(s)	606, 621, 783
HincII	GTYRAC	1 cut(s)	743
HindII	GTYRAC	1 cut(s)	743
HinfI	GANTC	3 cut(s)	67, 425, 816
HpaII	CCGG	1 cut(s)	808
HphI	GGTGA	2 cut(s)	326, 718
Hpy166II	GTNNAC	1 cut(s)	743
Hpy188I	TCNGA	2 cut(s)	430, 795
Hpy188III	TCNNGA	4 cut(s)	96, 361, 391, 827
Hpy8I	GTNNAC	1 cut(s)	743
Hpy99I	CGWCG	1 cut(s)	747
HpyAV	CCTTC	2 cut(s)	188, 611
HpyCH4III	ACNGT	1 cut(s)	740
HpyCH4V	TGCA	6 cut(s)	180, 245, 281, 353, 458, 672
HpyF10VI	GCNNNNNNNGC	4 cut(s)	242, 485, 494, 729
HpyF3I	CTNAG	2 cut(s)	359, 792
Hsp92I	GRCGYC	2 cut(s)	606, 636
Hsp92II	CATG	4 cut(s)	112, 184, 271, 377
HspAI	GCGC	3 cut(s)	606, 621, 783
KasI	GGCGCC	1 cut(s)	605
Ksp22I	TGATCA	1 cut(s)	823
Kzo9I	GATC	5 cut(s)	329, 526, 575, 595, 823
LmnI	GCTCC	1 cut(s)	790
Lsp1109I	GCAGC	2 cut(s)	229, 347
LweI	GCATC	1 cut(s)	550
MabI	ACCWGGT	1 cut(s)	310
MaeI	CTAG	1 cut(s)	725
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	5 cut(s)	331, 528, 577, 597, 825
MboI	GATC	5 cut(s)	329, 526, 575, 595, 823
MboII	GAAGA	3 cut(s)	42, 45, 162
MhlI	GDGCHC	1 cut(s)	713
MluCI	AATT	8 cut(s)	58, 139, 205, 317, 341, 385, 400, 490
Mly113I	GGCGCC	1 cut(s)	606
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	182
MseI	TTAA	3 cut(s)	41, 540, 779
MslI	CAYNNNNRTG	2 cut(s)	378, 521
MspI	CCGG	1 cut(s)	808
MspR9I	CCNGG	2 cut(s)	312, 809
MvaI	CCWGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	242, 485, 494, 729
NarI	GGCGCC	1 cut(s)	606
NciI	CCSGG	1 cut(s)	809
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	5 cut(s)	329, 526, 575, 595, 823
NlaIII	CATG	4 cut(s)	112, 184, 271, 377
NlaIV	GGNNCC	3 cut(s)	158, 199, 607
NmuCI	GTSAC	1 cut(s)	632
NsiI	ATGCAT	1 cut(s)	182
NspI	RCATGY	2 cut(s)	271, 377
NspV	TTCGAA	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	271
PciI	ACATGT	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	1 cut(s)	53
PfeI	GAWTC	2 cut(s)	425, 816
PflMI	CCANNNNNTGG	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	244, 337
PleI	GAGTC	1 cut(s)	61
PluTI	GGCGCC	1 cut(s)	609
PpsI	GAGTC	1 cut(s)	61
PscI	ACATGT	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	310
PspGI	CCWGG	1 cut(s)	310
PspN4I	GGNNCC	3 cut(s)	158, 199, 607
PspPI	GGNCC	3 cut(s)	198, 535, 646
PstI	CTGCAG	2 cut(s)	247, 355
RsaI	GTAC	1 cut(s)	372
RsaNI	GTAC	1 cut(s)	371
RseI	CAYNNNNRTG	2 cut(s)	378, 521
SalI	GTCGAC	1 cut(s)	741
SaqAI	TTAA	3 cut(s)	41, 540, 779
SatI	GCNGC	2 cut(s)	243, 336
Sau3AI	GATC	5 cut(s)	329, 526, 575, 595, 823
Sau96I	GGNCC	3 cut(s)	198, 535, 646
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	312, 809
SduI	GDGCHC	1 cut(s)	713
SexAI	ACCWGGT	1 cut(s)	310
SfaNI	GCATC	1 cut(s)	550
SfcI	CTRYAG	4 cut(s)	243, 351, 474, 699
SfoI	GGCGCC	1 cut(s)	607
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	3 cut(s)	198, 535, 646
SmiMI	CAYNNNNRTG	2 cut(s)	378, 521
SmlI	CTYRAG	2 cut(s)	464, 554
SmoI	CTYRAG	2 cut(s)	464, 554
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	8 cut(s)	58, 139, 205, 317, 341, 385, 400, 490
SsiI	CCGC	3 cut(s)	273, 503, 732
SspDI	GGCGCC	1 cut(s)	605
SspMI	CTAG	1 cut(s)	725
StyD4I	CCNGG	2 cut(s)	310, 807
StyI	CCWWGG	2 cut(s)	108, 724
TaaI	ACNGT	1 cut(s)	740
TaqI	TCGA	4 cut(s)	56, 589, 615, 742
TasI	AATT	8 cut(s)	58, 139, 205, 317, 341, 385, 400, 490
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	2 cut(s)	425, 816
Tru1I	TTAA	3 cut(s)	41, 540, 779
Tru9I	TTAA	3 cut(s)	41, 540, 779
TscAI	CASTG	2 cut(s)	442, 637
TseFI	GTSAC	1 cut(s)	632
TseI	GCWGC	2 cut(s)	242, 335
Tsp45I	GTSAC	1 cut(s)	632
TspDTI	ATGAA	2 cut(s)	396, 558
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	2 cut(s)	442, 637
Van91I	CCANNNNNTGG	1 cut(s)	207
VpaK11BI	GGWCC	3 cut(s)	198, 535, 646
XapI	RAATTY	3 cut(s)	58, 317, 385
XceI	RCATGY	2 cut(s)	271, 377
XmaJI	CCTAGG	1 cut(s)	724
XmiI	GTMKAC	1 cut(s)	742
XspI	CTAG	1 cut(s)	725
Zsp2I	ATGCAT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.