Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Forward (+)

233292 .. 236628

Gene Structure 3337 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g00330.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTTAAAGGAAGATGGTTCCCACAAGCAATGCCTCACCATTAGTCAAGGGTCCAAGTGTTGGAAAAACATTGTTTCAGTCGCATTGGCAACTGCTGCGGTTATTAGTTTCAGCTCTGGCATGCCCGCCATTGCAGACCTTAATAAGTTCGAAGCTGAAACACCTGGTGAATTTGGGATAGGATCAGCTGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTGCACGTGAATGAAAATTTCAGGAGGGCCAATTTCACATCTGCTGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCTGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCGGTTCTCACTCGAAGTGATCTTGGTGGTGCCTTAATTGAAGGTGCTGATTTCAGTGATGCTGTCTTGGACCTCTCCCAGAAGCAGGCTCTATGCAAGTATGCAAGTGGCACTAACCCAACTACAGGGGTGAGCACAAGAACAAGCCTAGGTTGTGGGAACAGTAGACGAAATGCTTATGGCTCTCCCTCATCCCCTTTGTTAAGTGCACCACCTCAGAAACTACTTAATCGGGATGGAATCTGTGATCAAGAAACTGGTCTTTGTGATGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

236

Amino Acids

24.85

Weight (kDa)

5.75

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	109 - 148	5.3e-09	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	134 - 171	3e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	458
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	595
AciI	CCGC	2 cut(s)	98, 126
AclWI	GGATC	2 cut(s)	190, 387
AcsI	RAATTY	2 cut(s)	170, 238
AcvI	CACGTG	1 cut(s)	229
AdeI	CACNNNGTG	1 cut(s)	167
AfiI	CCNNNNNNNGG	3 cut(s)	60, 514, 554
AgsI	TTSAA	3 cut(s)	297, 304, 470
AjnI	CCWGG	1 cut(s)	163
AluBI	AGCT	5 cut(s)	114, 155, 188, 326, 401
AluI	AGCT	5 cut(s)	114, 155, 188, 326, 401
Alw21I	GWGCWC	3 cut(s)	228, 566, 640
Alw44I	GTGCAC	2 cut(s)	224, 636
AlwI	GGATC	2 cut(s)	190, 387
AoxI	GGCC	1 cut(s)	249
ApaLI	GTGCAC	2 cut(s)	224, 636
ApeKI	GCWGC	2 cut(s)	95, 188
ApoI	RAATTY	2 cut(s)	170, 238
AspA2I	CCTAGG	1 cut(s)	577
AspS9I	GGNCC	4 cut(s)	51, 249, 388, 499
AsuHPI	GGTGA	3 cut(s)	28, 179, 571
AsuII	TTCGAA	1 cut(s)	150
AvaII	GGWCC	3 cut(s)	51, 388, 499
AvrII	CCTAGG	1 cut(s)	577
AxyI	CCTNAGG	1 cut(s)	212
BaeGI	GKGCMC	2 cut(s)	228, 640
BanI	GGYRCC	1 cut(s)	458
BbrPI	CACGTG	1 cut(s)	229
Bbv12I	GWGCWC	3 cut(s)	228, 566, 640
BbvI	GCAGC	2 cut(s)	82, 175
BccI	CCATC	3 cut(s)	8, 370, 659
BciT130I	CCWGG	1 cut(s)	165
BclI	TGATCA	1 cut(s)	676
BfaI	CTAG	1 cut(s)	578
BfmI	CTRYAG	3 cut(s)	204, 327, 552
BisI	GCNGC	2 cut(s)	96, 189
BlnI	CCTAGG	1 cut(s)	577
BlsI	GCNGC	2 cut(s)	97, 190
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	3 cut(s)	51, 388, 499
BmgT120I	GGNCC	4 cut(s)	51, 249, 388, 499
BmiI	GGNNCC	3 cut(s)	19, 52, 460
BmrFI	CCNGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	403, 478
Bpu14I	TTCGAA	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	338, 392
BsaAI	YACGTR	1 cut(s)	229
BsaJI	CCNNGG	1 cut(s)	577
Bsc4I	CCNNNNNNNGG	3 cut(s)	60, 514, 554
Bse1I	ACTGG	1 cut(s)	691
Bse21I	CCTNAGG	1 cut(s)	212
Bse3DI	GCAATG	2 cut(s)	35, 129
BseBI	CCWGG	1 cut(s)	165
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	3 cut(s)	418, 620, 670
BseLI	CCNNNNNNNGG	3 cut(s)	60, 514, 554
BseMI	GCAATG	2 cut(s)	35, 129
BseMII	CTCAG	2 cut(s)	226, 659
BseNI	ACTGG	1 cut(s)	691
BseSI	GKGCMC	2 cut(s)	228, 640
BseXI	GCAGC	2 cut(s)	82, 175
BshFI	GGCC	1 cut(s)	251
BshNI	GGYRCC	1 cut(s)	458
BsiHKAI	GWGCWC	3 cut(s)	228, 566, 640
BslI	CCNNNNNNNGG	3 cut(s)	60, 514, 554
BsnI	GGCC	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	228, 566, 640
Bsp143I	GATC	5 cut(s)	182, 379, 428, 448, 676
BspACI	CCGC	2 cut(s)	98, 126
BspANI	GGCC	1 cut(s)	251
BspCNI	CTCAG	2 cut(s)	225, 658
BspLI	GGNNCC	3 cut(s)	19, 52, 460
BspMAI	CTGCAG	1 cut(s)	208
BspPI	GGATC	2 cut(s)	190, 387
BspT104I	TTCGAA	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	458
BsrDI	GCAATG	2 cut(s)	35, 129
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	577
BssMI	GATC	5 cut(s)	182, 379, 428, 448, 676
BssT1I	CCWWGG	1 cut(s)	577
Bst2UI	CCWGG	1 cut(s)	165
Bst4CI	ACNGT	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBAI	YACGTR	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	150
BstC8I	GCNNGC	3 cut(s)	122, 126, 516
BstDEI	CTNAG	2 cut(s)	212, 645
BstF5I	GGATG	3 cut(s)	418, 620, 670
BstKTI	GATC	5 cut(s)	185, 382, 431, 451, 679
BstMBI	GATC	5 cut(s)	182, 379, 428, 448, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 338, 347
BstNI	CCWGG	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	3 cut(s)	204, 327, 552
BstSLI	GKGCMC	2 cut(s)	228, 640
BstV1I	GCAGC	2 cut(s)	82, 175
Bsu36I	CCTNAGG	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	418, 620, 670
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	3 cut(s)	228, 295, 490
Cac8I	GCNNGC	3 cut(s)	122, 126, 516
Cfr13I	GGNCC	4 cut(s)	51, 249, 388, 499
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	1 cut(s)	121
DdeI	CTNAG	2 cut(s)	212, 645
DpnI	GATC	5 cut(s)	184, 381, 430, 450, 678
DpnII	GATC	5 cut(s)	182, 379, 428, 448, 676
DraIII	CACNNNGTG	1 cut(s)	167
Eco130I	CCWWGG	1 cut(s)	577
Eco47I	GGWCC	3 cut(s)	51, 388, 499
Eco72I	CACGTG	1 cut(s)	229
Eco81I	CCTNAGG	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	577
ErhI	CCWWGG	1 cut(s)	577
FaeI	CATG	1 cut(s)	124
FaiI	YATR	9 cut(s)	122, 272, 313, 334, 336, 386, 523, 531, 609
FatI	CATG	1 cut(s)	120
FauI	CCCGC	1 cut(s)	133
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	1 cut(s)	595
Fnu4HI	GCNGC	2 cut(s)	96, 189
FokI	GGATG	3 cut(s)	425, 607, 677
Fsp4HI	GCNGC	2 cut(s)	96, 189
FspBI	CTAG	1 cut(s)	578
GluI	GCNGC	2 cut(s)	96, 189
HaeIII	GGCC	1 cut(s)	251
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	2 cut(s)	278, 669
HphI	GGTGA	3 cut(s)	28, 179, 571
Hpy166II	GTNNAC	3 cut(s)	226, 596, 638
Hpy188I	TCNGA	2 cut(s)	283, 648
Hpy188III	TCNNGA	4 cut(s)	214, 244, 662, 680
Hpy8I	GTNNAC	3 cut(s)	226, 596, 638
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	593
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	7 cut(s)	134, 206, 226, 311, 525, 533, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 338, 347
HpyF3I	CTNAG	2 cut(s)	212, 645
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	1 cut(s)	124
Ksp22I	TGATCA	1 cut(s)	676
Kzo9I	GATC	5 cut(s)	182, 379, 428, 448, 676
Lsp1109I	GCAGC	2 cut(s)	82, 175
LweI	GCATC	2 cut(s)	403, 478
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	1 cut(s)	578
MaeII	ACGT	1 cut(s)	228
MalI	GATC	5 cut(s)	184, 381, 430, 450, 678
MboI	GATC	5 cut(s)	182, 379, 428, 448, 676
MboII	GAAGA	1 cut(s)	23
MhlI	GDGCHC	3 cut(s)	228, 566, 640
MluCI	AATT	6 cut(s)	170, 194, 238, 253, 343, 465
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	44, 221, 240, 267, 512, 628, 654
MseI	TTAA	6 cut(s)	5, 141, 393, 464, 632, 657
MslI	CAYNNNNRTG	2 cut(s)	231, 374
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	95, 338, 347
NdeII	GATC	5 cut(s)	182, 379, 428, 448, 676
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	3 cut(s)	19, 52, 460
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	278, 669
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	97, 190
PmaCI	CACGTG	1 cut(s)	229
PmlI	CACGTG	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	229
Psp6I	CCWGG	1 cut(s)	163
PspCI	CACGTG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	3 cut(s)	19, 52, 460
PspPI	GGNCC	4 cut(s)	51, 249, 388, 499
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	188
RseI	CAYNNNNRTG	2 cut(s)	231, 374
SaqAI	TTAA	6 cut(s)	5, 141, 393, 464, 632, 657
SatI	GCNGC	2 cut(s)	96, 189
Sau3AI	GATC	5 cut(s)	182, 379, 428, 448, 676
Sau96I	GGNCC	4 cut(s)	51, 249, 388, 499
ScrFI	CCNGG	1 cut(s)	165
SduI	GDGCHC	3 cut(s)	228, 566, 640
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	403, 478
SfcI	CTRYAG	3 cut(s)	204, 327, 552
SfuI	TTCGAA	1 cut(s)	150
SinI	GGWCC	3 cut(s)	51, 388, 499
SmiMI	CAYNNNNRTG	2 cut(s)	231, 374
SmlI	CTYRAG	2 cut(s)	317, 407
SmoI	CTYRAG	2 cut(s)	317, 407
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	6 cut(s)	170, 194, 238, 253, 343, 465
SsiI	CCGC	2 cut(s)	98, 126
SspMI	CTAG	1 cut(s)	578
StyD4I	CCNGG	1 cut(s)	163
StyI	CCWWGG	1 cut(s)	577
TaaI	ACNGT	1 cut(s)	593
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	2 cut(s)	150, 442
TasI	AATT	6 cut(s)	170, 194, 238, 253, 343, 465
TfiI	GAWTC	2 cut(s)	278, 669
Tru1I	TTAA	6 cut(s)	5, 141, 393, 464, 632, 657
Tru9I	TTAA	6 cut(s)	5, 141, 393, 464, 632, 657
TscAI	CASTG	3 cut(s)	228, 295, 490
TseI	GCWGC	2 cut(s)	95, 188
TspDTI	ATGAA	2 cut(s)	249, 411
TspRI	CASTG	3 cut(s)	228, 295, 490
Van91I	CCANNNNNTGG	1 cut(s)	60
VneI	GTGCAC	2 cut(s)	224, 636
VpaK11BI	GGWCC	3 cut(s)	51, 388, 499
XapI	RAATTY	2 cut(s)	170, 238
XceI	RCATGY	1 cut(s)	124
XmaJI	CCTAGG	1 cut(s)	577
XmiI	GTMKAC	1 cut(s)	595
XspI	CTAG	1 cut(s)	578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.