Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008458

Physical Location & Seq

Genomic Coordinates Forward (+)

50801826 .. 50804252

Gene Structure 2427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003615

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGCACTCAGTTTTATTTCCTCACTTTCCATTCAGTCCTTAACCTCATCTTCTTCGAATTCAAAGACTCATCCAACCCGTCAGCAATCCCTCTTCAGACCCTTTTCCATGGTATGCCAGATAGACCCTAACAGACACAATTTTAAAGATTGTTCCCACAAGCAATGCATGACCATTAGAGAAGGGTCCAAGAATTGGAAAAACATGTTTTCAGTAGCATTGGCAACTGCTGCAGTTATTAGCTTCAGCTCTGGCATGCCCGCCATTGCAGACCTCAATAAGTTTGAAGCCGAAACACCTGGTGAATTTGGTATAGGATCAGCAGCCCAATTTGGTTCTGCAGACCTCAGGAAAGCAGTACATGTGAATGAAAATTTCAGGAGAGCCAATTTCACATCTGCTGATATGAGGGAATCTGATTTCAGTGGTTCAACATTCAATGGTGCATACCTTGAGAAAGCTGTAGCATATAAGGCTAATTTTGCTGGTGCGGATTTGAGCGACACATTGATGGATCGTATGGTCCTTAATGAAGCTAATCTCAAGGATGCTGTGCTTGTTAGATCAGTTCTCACTCGAAGTGATCTTGGTGGTGCCCTAATTGAAGGCGCTGATTTCAGTGACGCCGTTTTGGACCTCTCCCAGAAGCAGGCTCTCTGCAAGTATGCGAGTGGCACAAACCCAACAACAGGGGTGAGCACAAGATCAAGCCTAGGTTGCGGGAACAGTCGACGAAATGCTTATGGCTCCCCCTCATCCCCTCTGTTAAGCGCTCCACCTCAGAAACTACTTAATCGGGATGGATTCTGTGATCAAGAAACTGGTCTTTGTGATGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pentapeptide

Protein Analysis

281

Amino Acids

30.1

Weight (kDa)

8.14

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pentapeptide	PF00805	109 - 148	1.1e-08	Pentapeptide repeats (8 copies)
Pentapeptide	PF00805	134 - 171	6.3e-08	Pentapeptide repeats (8 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008458)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12250 AT1G12250 AT1G12250
fragaria_vesca	FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330 FvH4_5g00330
malus_domestica	MD06G1065500.v1.1
prunus_persica	Prupe.5G075900_v2.0.a1 Prupe.5G075900_v2.0.a1
pyrus_communis	pycom06g05880
rosa_chinensis	RchiOBHm_Chr7g0202221
rosa_laevigata	RLG00000003615
rosa_multiflora	Rmu_sc0005017.1_g000002
rosa_roxburghii	Rroxscaffold_3G00254730
rosa_rugosa	Rorug07G0069100
rosa_samantha	Rh7AG196500 Rh7BG197700 Rh7CG207600 Rh7DG203100
rosa_wichuraiana	Rw7G017200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	593
AccB7I	CCANNNNNTGG	1 cut(s)	195
AccI	GTMKAC	1 cut(s)	730
AciI	CCGC	3 cut(s)	261, 491, 720
AclWI	GGATC	2 cut(s)	325, 522
AcsI	RAATTY	3 cut(s)	58, 305, 373
AcuI	CTGAAG	2 cut(s)	79, 229
AcyI	GRCGYC	1 cut(s)	624
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	1 cut(s)	360
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	3 cut(s)	195, 649, 689
AflIII	ACRYGT	2 cut(s)	204, 361
AgsI	TTSAA	5 cut(s)	63, 287, 432, 439, 605
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	4 cut(s)	243, 249, 461, 536
AluI	AGCT	4 cut(s)	243, 249, 461, 536
Alw21I	GWGCWC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	325, 522
Aor51HI	AGCGCT	1 cut(s)	772
ApeKI	GCWGC	2 cut(s)	230, 323
ApoI	RAATTY	3 cut(s)	58, 305, 373
AspA2I	CCTAGG	1 cut(s)	712
AspLEI	GCGC	2 cut(s)	611, 773
AspS9I	GGNCC	3 cut(s)	186, 523, 634
AsuHPI	GGTGA	2 cut(s)	314, 706
AsuII	TTCGAA	1 cut(s)	56
AvaII	GGWCC	3 cut(s)	186, 523, 634
AvrII	CCTAGG	1 cut(s)	712
AxyI	CCTNAGG	1 cut(s)	347
BaeGI	GKGCMC	1 cut(s)	598
BanI	GGYRCC	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	701
BbvI	GCAGC	2 cut(s)	217, 335
BccI	CCATC	2 cut(s)	505, 794
BceAI	ACGGC	1 cut(s)	611
BciT130I	CCWGG	1 cut(s)	300
BclI	TGATCA	1 cut(s)	811
BfaI	CTAG	1 cut(s)	713
BfmI	CTRYAG	3 cut(s)	231, 339, 462
BfoI	RGCGCY	2 cut(s)	612, 774
BisI	GCNGC	2 cut(s)	231, 324
BlnI	CCTAGG	1 cut(s)	712
BlsI	GCNGC	2 cut(s)	232, 325
Bme1390I	CCNGG	1 cut(s)	300
Bme18I	GGWCC	3 cut(s)	186, 523, 634
BmgT120I	GGNCC	3 cut(s)	186, 523, 634
BmiI	GGNNCC	3 cut(s)	187, 595, 748
BmrFI	CCNGG	1 cut(s)	300
BmsI	GCATC	1 cut(s)	538
Bpu14I	TTCGAA	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	473, 527
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	2 cut(s)	108, 712
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 649, 689
Bse1I	ACTGG	1 cut(s)	826
Bse21I	CCTNAGG	1 cut(s)	347
Bse3DI	GCAATG	2 cut(s)	170, 264
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	2 cut(s)	108, 712
BseGI	GGATG	4 cut(s)	70, 553, 755, 805
BseLI	CCNNNNNNNGG	3 cut(s)	195, 649, 689
BseMI	GCAATG	2 cut(s)	170, 264
BseMII	CTCAG	3 cut(s)	22, 361, 794
BseNI	ACTGG	1 cut(s)	826
BseSI	GKGCMC	1 cut(s)	598
BseXI	GCAGC	2 cut(s)	217, 335
BshNI	GGYRCC	1 cut(s)	593
BsiHKAI	GWGCWC	1 cut(s)	701
BslI	CCNNNNNNNGG	3 cut(s)	195, 649, 689
Bsp119I	TTCGAA	1 cut(s)	56
Bsp1286I	GDGCHC	2 cut(s)	598, 701
Bsp143I	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
Bsp19I	CCATGG	1 cut(s)	108
BspACI	CCGC	3 cut(s)	261, 491, 720
BspCNI	CTCAG	3 cut(s)	21, 360, 793
BspLI	GGNNCC	3 cut(s)	187, 595, 748
BspMAI	CTGCAG	2 cut(s)	235, 343
BspPI	GGATC	2 cut(s)	325, 522
BspT104I	TTCGAA	1 cut(s)	56
BspT107I	GGYRCC	1 cut(s)	593
BsrDI	GCAATG	2 cut(s)	170, 264
BsrI	ACTGG	1 cut(s)	826
BssECI	CCNNGG	2 cut(s)	108, 712
BssMI	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
BssNI	GRCGYC	1 cut(s)	624
BssT1I	CCWWGG	2 cut(s)	108, 712
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	1 cut(s)	728
Bst6I	CTCTTC	1 cut(s)	98
BstACI	GRCGYC	1 cut(s)	624
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBI	TTCGAA	1 cut(s)	56
BstC8I	GCNNGC	3 cut(s)	257, 261, 651
BstDEI	CTNAG	3 cut(s)	8, 347, 780
BstDSI	CCRYGG	1 cut(s)	108
BstF5I	GGATG	4 cut(s)	70, 553, 755, 805
BstH2I	RGCGCY	2 cut(s)	612, 774
BstHHI	GCGC	2 cut(s)	611, 773
BstKTI	GATC	6 cut(s)	320, 517, 566, 586, 707, 814
BstMBI	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	230, 473, 482, 717
BstNI	CCWGG	1 cut(s)	300
BstNSI	RCATGY	3 cut(s)	208, 259, 365
BstSCI	CCNGG	1 cut(s)	298
BstSFI	CTRYAG	3 cut(s)	231, 339, 462
BstSLI	GKGCMC	1 cut(s)	598
BstV1I	GCAGC	2 cut(s)	217, 335
Bsu36I	CCTNAGG	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	108
BtsCI	GGATG	4 cut(s)	70, 553, 755, 805
BtsIMutI	CAGTG	2 cut(s)	430, 625
Cac8I	GCNNGC	3 cut(s)	257, 261, 651
CfoI	GCGC	2 cut(s)	611, 773
Cfr13I	GGNCC	3 cut(s)	186, 523, 634
CseI	GACGC	1 cut(s)	632
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	1 cut(s)	359
CviAII	CATG	5 cut(s)	109, 169, 205, 256, 362
CviQI	GTAC	1 cut(s)	359
DdeI	CTNAG	3 cut(s)	8, 347, 780
DpnI	GATC	6 cut(s)	319, 516, 565, 585, 706, 813
DpnII	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
DraI	TTTAAA	1 cut(s)	145
DraIII	CACNNNGTG	1 cut(s)	302
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco130I	CCWWGG	2 cut(s)	108, 712
Eco47I	GGWCC	3 cut(s)	186, 523, 634
Eco47III	AGCGCT	1 cut(s)	772
Eco57I	CTGAAG	2 cut(s)	79, 229
Eco81I	CCTNAGG	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	1 cut(s)	298
EcoT14I	CCWWGG	2 cut(s)	108, 712
EcoT22I	ATGCAT	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	108, 712
FaeI	CATG	5 cut(s)	112, 172, 208, 259, 365
FatI	CATG	5 cut(s)	108, 168, 204, 255, 361
FauI	CCCGC	2 cut(s)	268, 713
FbaI	TGATCA	1 cut(s)	811
FblI	GTMKAC	1 cut(s)	730
Fnu4HI	GCNGC	2 cut(s)	231, 324
FokI	GGATG	4 cut(s)	57, 560, 742, 812
Fsp4HI	GCNGC	2 cut(s)	231, 324
FspBI	CTAG	1 cut(s)	713
GlaI	GCGC	2 cut(s)	610, 772
GluI	GCNGC	2 cut(s)	231, 324
HaeII	RGCGCY	2 cut(s)	612, 774
HgaI	GACGC	1 cut(s)	632
HhaI	GCGC	2 cut(s)	611, 773
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	5 cut(s)	112, 172, 208, 259, 365
Hin6I	GCGC	2 cut(s)	609, 771
HinP1I	GCGC	2 cut(s)	609, 771
HincII	GTYRAC	1 cut(s)	731
HindII	GTYRAC	1 cut(s)	731
HinfI	GANTC	3 cut(s)	67, 413, 804
HphI	GGTGA	2 cut(s)	314, 706
Hpy166II	GTNNAC	1 cut(s)	731
Hpy188I	TCNGA	3 cut(s)	98, 418, 783
Hpy188III	TCNNGA	4 cut(s)	349, 379, 797, 815
Hpy8I	GTNNAC	1 cut(s)	731
Hpy99I	CGWCG	1 cut(s)	735
HpyAV	CCTTC	2 cut(s)	176, 599
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4V	TGCA	6 cut(s)	168, 233, 269, 341, 446, 660
HpyF10VI	GCNNNNNNNGC	4 cut(s)	230, 473, 482, 717
HpyF3I	CTNAG	3 cut(s)	8, 347, 780
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	5 cut(s)	112, 172, 208, 259, 365
HspAI	GCGC	2 cut(s)	609, 771
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
LmnI	GCTCC	2 cut(s)	752, 778
Lsp1109I	GCAGC	2 cut(s)	217, 335
LweI	GCATC	1 cut(s)	538
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	1 cut(s)	713
MaeIII	GTNAC	1 cut(s)	620
MalI	GATC	6 cut(s)	319, 516, 565, 585, 706, 813
MboI	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
MboII	GAAGA	3 cut(s)	42, 45, 85
MhlI	GDGCHC	2 cut(s)	598, 701
MluCI	AATT	9 cut(s)	58, 139, 193, 305, 329, 373, 388, 478, 600
MlyI	GAGTC	1 cut(s)	61
MmeI	TCCRAC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	170
MseI	TTAA	6 cut(s)	41, 144, 528, 767, 792, 837
MslI	CAYNNNNRTG	2 cut(s)	366, 509
MspR9I	CCNGG	1 cut(s)	300
MvaI	CCWGG	1 cut(s)	300
MwoI	GCNNNNNNNGC	4 cut(s)	230, 473, 482, 717
NcoI	CCATGG	1 cut(s)	108
NdeII	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
NlaIII	CATG	5 cut(s)	112, 172, 208, 259, 365
NlaIV	GGNNCC	3 cut(s)	187, 595, 748
NmuCI	GTSAC	1 cut(s)	620
NsiI	ATGCAT	1 cut(s)	170
NspI	RCATGY	3 cut(s)	208, 259, 365
NspV	TTCGAA	1 cut(s)	56
PaeI	GCATGC	1 cut(s)	259
PciI	ACATGT	2 cut(s)	204, 361
PfeI	GAWTC	2 cut(s)	413, 804
PflMI	CCANNNNNTGG	1 cut(s)	195
PkrI	GCNGC	2 cut(s)	232, 325
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
PscI	ACATGT	2 cut(s)	204, 361
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	187, 595, 748
PspPI	GGNCC	3 cut(s)	186, 523, 634
PstI	CTGCAG	2 cut(s)	235, 343
RsaI	GTAC	1 cut(s)	360
RsaNI	GTAC	1 cut(s)	359
RseI	CAYNNNNRTG	2 cut(s)	366, 509
SalI	GTCGAC	1 cut(s)	729
SaqAI	TTAA	6 cut(s)	41, 144, 528, 767, 792, 837
SatI	GCNGC	2 cut(s)	231, 324
Sau3AI	GATC	6 cut(s)	317, 514, 563, 583, 704, 811
Sau96I	GGNCC	3 cut(s)	186, 523, 634
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	300
SduI	GDGCHC	2 cut(s)	598, 701
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	538
SfcI	CTRYAG	3 cut(s)	231, 339, 462
SfuI	TTCGAA	1 cut(s)	56
SinI	GGWCC	3 cut(s)	186, 523, 634
SmiMI	CAYNNNNRTG	2 cut(s)	366, 509
SmlI	CTYRAG	2 cut(s)	452, 542
SmoI	CTYRAG	2 cut(s)	452, 542
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	9 cut(s)	58, 139, 193, 305, 329, 373, 388, 478, 600
SsiI	CCGC	3 cut(s)	261, 491, 720
SspMI	CTAG	1 cut(s)	713
StyD4I	CCNGG	1 cut(s)	298
StyI	CCWWGG	2 cut(s)	108, 712
TaaI	ACNGT	1 cut(s)	728
TaqI	TCGA	3 cut(s)	56, 577, 730
TasI	AATT	9 cut(s)	58, 139, 193, 305, 329, 373, 388, 478, 600
TatI	WGTACW	1 cut(s)	358
TfiI	GAWTC	2 cut(s)	413, 804
Tru1I	TTAA	6 cut(s)	41, 144, 528, 767, 792, 837
Tru9I	TTAA	6 cut(s)	41, 144, 528, 767, 792, 837
TscAI	CASTG	2 cut(s)	430, 625
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	230, 323
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	384, 546
TspRI	CASTG	2 cut(s)	430, 625
Van91I	CCANNNNNTGG	1 cut(s)	195
VpaK11BI	GGWCC	3 cut(s)	186, 523, 634
XapI	RAATTY	3 cut(s)	58, 305, 373
XceI	RCATGY	3 cut(s)	208, 259, 365
XmaJI	CCTAGG	1 cut(s)	712
XmiI	GTMKAC	1 cut(s)	730
XspI	CTAG	1 cut(s)	713
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.