Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13195 AT1G13195 AT1G24440 AT1G24440 |
| fragaria_vesca | FvH4_4g24910 FvH4_4g24910 |
| malus_domestica | MD13G1107900.v1.1 MD16G1107800.v1.1 |
| prunus_persica | Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1 |
| pyrus_communis | pycom13g09330 pycom16g09200 |
| rosa_chinensis | RchiOBHm_Chr4g0431971 |
| rosa_laevigata | RLG00000006870 |
| rosa_multiflora | Rmu_sc0004965.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00373410 |
| rosa_rugosa | Rorug04G0253800 |
| rosa_samantha | Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000 |
| rosa_wichuraiana | Rw4G027050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 255 |
| AciI | CCGC | 3 cut(s) | 133, 486, 644 |
| AcuI | CTGAAG | 1 cut(s) | 122 |
| AfaI | GTAC | 2 cut(s) | 47, 767 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 727 |
| AgsI | TTSAA | 4 cut(s) | 61, 83, 574, 681 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 677, 709 |
| AluBI | AGCT | 4 cut(s) | 74, 286, 352, 743 |
| AluI | AGCT | 4 cut(s) | 74, 286, 352, 743 |
| Alw26I | GTCTC | 1 cut(s) | 582 |
| ApeKI | GCWGC | 2 cut(s) | 349, 603 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 380, 412 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 108 |
| AspS9I | GGNCC | 1 cut(s) | 262 |
| AsuHPI | GGTGA | 1 cut(s) | 659 |
| AvaII | GGWCC | 1 cut(s) | 262 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 151, 183 |
| BbsI | GAAGAC | 1 cut(s) | 21 |
| BbvI | GCAGC | 2 cut(s) | 361, 615 |
| BccI | CCATC | 2 cut(s) | 266, 349 |
| BceAI | ACGGC | 1 cut(s) | 690 |
| BciVI | GTATCC | 1 cut(s) | 658 |
| BcoDI | GTCTC | 1 cut(s) | 582 |
| BfmI | CTRYAG | 2 cut(s) | 347, 779 |
| BfuI | GTATCC | 1 cut(s) | 658 |
| BisI | GCNGC | 3 cut(s) | 134, 350, 604 |
| BlsI | GCNGC | 3 cut(s) | 135, 351, 605 |
| BmcAI | AGTACT | 1 cut(s) | 767 |
| Bme18I | GGWCC | 1 cut(s) | 262 |
| BmgT120I | GGNCC | 1 cut(s) | 262 |
| BmsI | GCATC | 1 cut(s) | 555 |
| BpiI | GAAGAC | 1 cut(s) | 21 |
| Bpu10I | CCTNAGC | 1 cut(s) | 282 |
| BsaJI | CCNNGG | 1 cut(s) | 726 |
| BsaWI | WCCGGW | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 727 |
| Bse118I | RCCGGY | 1 cut(s) | 461 |
| Bse1I | ACTGG | 2 cut(s) | 153, 265 |
| Bse3DI | GCAATG | 1 cut(s) | 463 |
| BseDI | CCNNGG | 1 cut(s) | 726 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BseMI | GCAATG | 1 cut(s) | 463 |
| BseMII | CTCAG | 3 cut(s) | 427, 593, 636 |
| BseNI | ACTGG | 2 cut(s) | 153, 265 |
| BseXI | GCAGC | 2 cut(s) | 361, 615 |
| BsiSI | CCGG | 2 cut(s) | 190, 462 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 727 |
| BsmAI | GTCTC | 1 cut(s) | 582 |
| BsmI | GAATGC | 1 cut(s) | 488 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspACI | CCGC | 3 cut(s) | 133, 486, 644 |
| BspCNI | CTCAG | 3 cut(s) | 426, 592, 635 |
| BspMAI | CTGCAG | 1 cut(s) | 351 |
| BsrDI | GCAATG | 1 cut(s) | 463 |
| BsrFI | RCCGGY | 1 cut(s) | 461 |
| BsrI | ACTGG | 2 cut(s) | 153, 265 |
| BssAI | RCCGGY | 1 cut(s) | 461 |
| BssECI | CCNNGG | 1 cut(s) | 726 |
| BssMI | GATC | 1 cut(s) | 199 |
| BssT1I | CCWWGG | 1 cut(s) | 726 |
| Bst6I | CTCTTC | 2 cut(s) | 185, 605 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 552 |
| BstC8I | GCNNGC | 1 cut(s) | 642 |
| BstDEI | CTNAG | 5 cut(s) | 282, 367, 413, 579, 622 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 725 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMAI | GTCTC | 1 cut(s) | 582 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 292, 552 |
| BstSFI | CTRYAG | 2 cut(s) | 347, 779 |
| BstV1I | GCAGC | 2 cut(s) | 361, 615 |
| BstV2I | GAAGAC | 1 cut(s) | 21 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 272 |
| BsuI | GTATCC | 1 cut(s) | 658 |
| BtsI | GCAGTG | 1 cut(s) | 344 |
| BtsIMutI | CAGTG | 1 cut(s) | 344 |
| Cac8I | GCNNGC | 1 cut(s) | 642 |
| Cfr10I | RCCGGY | 1 cut(s) | 461 |
| Cfr13I | GGNCC | 1 cut(s) | 262 |
| Csp6I | GTAC | 2 cut(s) | 46, 766 |
| CviAII | CATG | 4 cut(s) | 213, 245, 585, 607 |
| CviJI | RGCY | 8 cut(s) | 74, 136, 286, 352, 437, 677, 720, 743 |
| CviKI_1 | RGCY | 8 cut(s) | 74, 136, 286, 352, 437, 677, 720, 743 |
| CviQI | GTAC | 2 cut(s) | 46, 766 |
| DdeI | CTNAG | 5 cut(s) | 282, 367, 413, 579, 622 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| Eam1104I | CTCTTC | 2 cut(s) | 185, 605 |
| EarI | CTCTTC | 2 cut(s) | 185, 605 |
| Eco130I | CCWWGG | 1 cut(s) | 726 |
| Eco32I | GATATC | 1 cut(s) | 21 |
| Eco47I | GGWCC | 1 cut(s) | 262 |
| Eco57I | CTGAAG | 1 cut(s) | 122 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 725 |
| EcoRV | GATATC | 1 cut(s) | 21 |
| EcoT14I | CCWWGG | 1 cut(s) | 726 |
| ErhI | CCWWGG | 1 cut(s) | 726 |
| FaeI | CATG | 4 cut(s) | 216, 248, 588, 610 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 661, 693 |
| FatI | CATG | 4 cut(s) | 212, 244, 584, 606 |
| FauI | CCCGC | 1 cut(s) | 637 |
| FblI | GTMKAC | 1 cut(s) | 255 |
| Fnu4HI | GCNGC | 3 cut(s) | 134, 350, 604 |
| Fsp4HI | GCNGC | 3 cut(s) | 134, 350, 604 |
| GluI | GCNGC | 3 cut(s) | 134, 350, 604 |
| HapII | CCGG | 2 cut(s) | 190, 462 |
| Hin1II | CATG | 4 cut(s) | 216, 248, 588, 610 |
| HindIII | AAGCTT | 1 cut(s) | 284 |
| HinfI | GANTC | 4 cut(s) | 53, 411, 450, 699 |
| HpaII | CCGG | 2 cut(s) | 190, 462 |
| HphI | GGTGA | 1 cut(s) | 659 |
| Hpy166II | GTNNAC | 3 cut(s) | 256, 619, 757 |
| Hpy188I | TCNGA | 4 cut(s) | 141, 271, 625, 698 |
| Hpy8I | GTNNAC | 3 cut(s) | 256, 619, 757 |
| HpyAV | CCTTC | 3 cut(s) | 55, 294, 731 |
| HpyCH4V | TGCA | 3 cut(s) | 349, 507, 546 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 292, 552 |
| HpyF3I | CTNAG | 5 cut(s) | 282, 367, 413, 579, 622 |
| Hsp92II | CATG | 4 cut(s) | 216, 248, 588, 610 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LmnI | GCTCC | 1 cut(s) | 192 |
| LpnPI | CCDG | 5 cut(s) | 134, 203, 278, 475, 750 |
| Lsp1109I | GCAGC | 2 cut(s) | 361, 615 |
| LweI | GCATC | 1 cut(s) | 555 |
| MaeIII | GTNAC | 1 cut(s) | 158 |
| MalI | GATC | 1 cut(s) | 201 |
| MboI | GATC | 1 cut(s) | 199 |
| MfeI | CAATTG | 1 cut(s) | 562 |
| MluCI | AATT | 4 cut(s) | 91, 108, 526, 562 |
| MlyI | GAGTC | 1 cut(s) | 405 |
| MmeI | TCCRAC | 1 cut(s) | 357 |
| MnlI | CCTC | 6 cut(s) | 220, 234, 248, 427, 593, 619 |
| MroXI | GAANNNNTTC | 1 cut(s) | 108 |
| MseI | TTAA | 2 cut(s) | 233, 405 |
| MslI | CAYNNNNRTG | 1 cut(s) | 512 |
| MspI | CCGG | 2 cut(s) | 190, 462 |
| MunI | CAATTG | 1 cut(s) | 562 |
| Mva1269I | GAATGC | 1 cut(s) | 488 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 292, 552 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 4 cut(s) | 216, 248, 588, 610 |
| PctI | GAATGC | 1 cut(s) | 488 |
| PdmI | GAANNNNTTC | 1 cut(s) | 108 |
| PfeI | GAWTC | 3 cut(s) | 53, 450, 699 |
| PkrI | GCNGC | 3 cut(s) | 135, 351, 605 |
| PleI | GAGTC | 1 cut(s) | 405 |
| PpsI | GAGTC | 1 cut(s) | 405 |
| PspPI | GGNCC | 1 cut(s) | 262 |
| PstI | CTGCAG | 1 cut(s) | 351 |
| RsaI | GTAC | 2 cut(s) | 47, 767 |
| RsaNI | GTAC | 2 cut(s) | 46, 766 |
| RseI | CAYNNNNRTG | 1 cut(s) | 512 |
| SaqAI | TTAA | 2 cut(s) | 233, 405 |
| SatI | GCNGC | 3 cut(s) | 134, 350, 604 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| Sau96I | GGNCC | 1 cut(s) | 262 |
| ScaI | AGTACT | 1 cut(s) | 767 |
| SchI | GAGTC | 1 cut(s) | 405 |
| SetI | ASST | 9 cut(s) | 66, 76, 240, 264, 283, 288, 354, 405, 745 |
| SfaNI | GCATC | 1 cut(s) | 555 |
| SfcI | CTRYAG | 2 cut(s) | 347, 779 |
| SinI | GGWCC | 1 cut(s) | 262 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 512 |
| Sse9I | AATT | 4 cut(s) | 91, 108, 526, 562 |
| SsiI | CCGC | 3 cut(s) | 133, 486, 644 |
| StyI | CCWWGG | 1 cut(s) | 726 |
| TaqI | TCGA | 1 cut(s) | 598 |
| TasI | AATT | 4 cut(s) | 91, 108, 526, 562 |
| TatI | WGTACW | 1 cut(s) | 765 |
| TauI | GCSGC | 1 cut(s) | 136 |
| TfiI | GAWTC | 3 cut(s) | 53, 450, 699 |
| Tru1I | TTAA | 2 cut(s) | 233, 405 |
| Tru9I | TTAA | 2 cut(s) | 233, 405 |
| TscAI | CASTG | 1 cut(s) | 351 |
| TseI | GCWGC | 2 cut(s) | 349, 603 |
| TspDTI | ATGAA | 7 cut(s) | 24, 66, 143, 158, 159, 233, 623 |
| TspGWI | ACGGA | 1 cut(s) | 312 |
| TspRI | CASTG | 1 cut(s) | 351 |
| VpaK11BI | GGWCC | 1 cut(s) | 262 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 725 |
| XmiI | GTMKAC | 1 cut(s) | 255 |
| XmnI | GAANNNNTTC | 1 cut(s) | 108 |
| ZrmI | AGTACT | 1 cut(s) | 767 |