Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13195 AT1G13195 AT1G24440 AT1G24440 |
| fragaria_vesca | FvH4_4g24910 FvH4_4g24910 |
| malus_domestica | MD13G1107900.v1.1 MD16G1107800.v1.1 |
| prunus_persica | Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1 |
| pyrus_communis | pycom13g09330 pycom16g09200 |
| rosa_chinensis | RchiOBHm_Chr4g0431971 |
| rosa_laevigata | RLG00000006870 |
| rosa_multiflora | Rmu_sc0004965.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00373410 |
| rosa_rugosa | Rorug04G0253800 |
| rosa_samantha | Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000 |
| rosa_wichuraiana | Rw4G027050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 199, 237, 246 |
| AciI | CCGC | 1 cut(s) | 334 |
| AcsI | RAATTY | 2 cut(s) | 217, 393 |
| AcuI | CTGAAG | 1 cut(s) | 314 |
| AfaI | GTAC | 1 cut(s) | 523 |
| AgsI | TTSAA | 4 cut(s) | 43, 122, 273, 696 |
| AjnI | CCWGG | 1 cut(s) | 30 |
| AluBI | AGCT | 2 cut(s) | 83, 101 |
| AluI | AGCT | 2 cut(s) | 83, 101 |
| Alw21I | GWGCWC | 1 cut(s) | 657 |
| AoxI | GGCC | 1 cut(s) | 260 |
| ApeKI | GCWGC | 2 cut(s) | 83, 86 |
| ApoI | RAATTY | 2 cut(s) | 217, 393 |
| AspS9I | GGNCC | 1 cut(s) | 261 |
| BanII | GRGCYC | 1 cut(s) | 151 |
| BbsI | GAAGAC | 2 cut(s) | 15, 648 |
| Bbv12I | GWGCWC | 1 cut(s) | 657 |
| BbvI | GCAGC | 2 cut(s) | 70, 73 |
| BccI | CCATC | 2 cut(s) | 248, 452 |
| BceAI | ACGGC | 1 cut(s) | 502 |
| BciT130I | CCWGG | 1 cut(s) | 32 |
| BfaI | CTAG | 2 cut(s) | 80, 384 |
| BisI | GCNGC | 3 cut(s) | 84, 87, 335 |
| BlsI | GCNGC | 3 cut(s) | 85, 88, 336 |
| Bme1390I | CCNGG | 1 cut(s) | 32 |
| BmgT120I | GGNCC | 1 cut(s) | 261 |
| BmiI | GGNNCC | 1 cut(s) | 150 |
| BmrFI | CCNGG | 1 cut(s) | 32 |
| BmrI | ACTGGG | 1 cut(s) | 154 |
| BmsI | GCATC | 3 cut(s) | 355, 570, 745 |
| BmuI | ACTGGG | 1 cut(s) | 154 |
| BpiI | GAAGAC | 2 cut(s) | 15, 648 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| BsaJI | CCNNGG | 1 cut(s) | 277 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 692, 722 |
| Bse1I | ACTGG | 3 cut(s) | 19, 149, 584 |
| Bse3DI | GCAATG | 2 cut(s) | 442, 478 |
| BseBI | CCWGG | 1 cut(s) | 32 |
| BseDI | CCNNGG | 1 cut(s) | 277 |
| BseGI | GGATG | 1 cut(s) | 379 |
| BseMI | GCAATG | 2 cut(s) | 442, 478 |
| BseNI | ACTGG | 3 cut(s) | 19, 149, 584 |
| BseRI | GAGGAG | 2 cut(s) | 141, 509 |
| BseXI | GCAGC | 2 cut(s) | 70, 73 |
| BshFI | GGCC | 1 cut(s) | 262 |
| BsiHKAI | GWGCWC | 1 cut(s) | 657 |
| BslFI | GGGAC | 1 cut(s) | 588 |
| BsmFI | GGGAC | 1 cut(s) | 588 |
| BsnI | GGCC | 1 cut(s) | 262 |
| Bsp1286I | GDGCHC | 2 cut(s) | 151, 657 |
| Bsp19I | CCATGG | 1 cut(s) | 277 |
| BspACI | CCGC | 1 cut(s) | 334 |
| BspANI | GGCC | 1 cut(s) | 262 |
| BspHI | TCATGA | 1 cut(s) | 550 |
| BspLI | GGNNCC | 1 cut(s) | 150 |
| BsrDI | GCAATG | 2 cut(s) | 442, 478 |
| BsrI | ACTGG | 3 cut(s) | 19, 149, 584 |
| BssECI | CCNNGG | 1 cut(s) | 277 |
| BssNAI | GTATAC | 1 cut(s) | 247 |
| BssT1I | CCWWGG | 1 cut(s) | 277 |
| Bst1107I | GTATAC | 1 cut(s) | 247 |
| Bst2UI | CCWGG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 2 cut(s) | 174, 691 |
| Bst6I | CTCTTC | 2 cut(s) | 333, 486 |
| BstC8I | GCNNGC | 2 cut(s) | 69, 260 |
| BstDEI | CTNAG | 2 cut(s) | 102, 511 |
| BstDSI | CCRYGG | 1 cut(s) | 277 |
| BstF5I | GGATG | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 432, 468 |
| BstNI | CCWGG | 1 cut(s) | 32 |
| BstNSI | RCATGY | 2 cut(s) | 71, 603 |
| BstSCI | CCNGG | 1 cut(s) | 30 |
| BstV1I | GCAGC | 2 cut(s) | 70, 73 |
| BstV2I | GAAGAC | 2 cut(s) | 15, 648 |
| BstZ17I | GTATAC | 1 cut(s) | 247 |
| BsuRI | GGCC | 1 cut(s) | 262 |
| BtgI | CCRYGG | 1 cut(s) | 277 |
| BtsCI | GGATG | 1 cut(s) | 379 |
| BtsIMutI | CAGTG | 3 cut(s) | 142, 179, 681 |
| Cac8I | GCNNGC | 2 cut(s) | 69, 260 |
| CciI | TCATGA | 1 cut(s) | 550 |
| Cfr13I | GGNCC | 1 cut(s) | 261 |
| Csp6I | GTAC | 1 cut(s) | 522 |
| CviAII | CATG | 8 cut(s) | 68, 189, 278, 341, 388, 551, 600, 766 |
| CviJI | RGCY | 9 cut(s) | 56, 83, 101, 149, 262, 276, 337, 517, 735 |
| CviKI_1 | RGCY | 9 cut(s) | 56, 83, 101, 149, 262, 276, 337, 517, 735 |
| CviQI | GTAC | 1 cut(s) | 522 |
| DdeI | CTNAG | 2 cut(s) | 102, 511 |
| Eam1104I | CTCTTC | 2 cut(s) | 333, 486 |
| EarI | CTCTTC | 2 cut(s) | 333, 486 |
| Eco130I | CCWWGG | 1 cut(s) | 277 |
| Eco24I | GRGCYC | 1 cut(s) | 151 |
| Eco32I | GATATC | 1 cut(s) | 212 |
| Eco57I | CTGAAG | 1 cut(s) | 314 |
| EcoRII | CCWGG | 1 cut(s) | 30 |
| EcoRV | GATATC | 1 cut(s) | 212 |
| EcoT14I | CCWWGG | 1 cut(s) | 277 |
| EcoT38I | GRGCYC | 1 cut(s) | 151 |
| ErhI | CCWWGG | 1 cut(s) | 277 |
| FaeI | CATG | 8 cut(s) | 71, 192, 281, 344, 391, 554, 603, 769 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 689, 721 |
| FaqI | GGGAC | 1 cut(s) | 588 |
| FatI | CATG | 8 cut(s) | 67, 188, 277, 340, 387, 550, 599, 765 |
| FblI | GTMKAC | 3 cut(s) | 199, 237, 246 |
| Fnu4HI | GCNGC | 3 cut(s) | 84, 87, 335 |
| FokI | GGATG | 1 cut(s) | 366 |
| FriOI | GRGCYC | 1 cut(s) | 151 |
| Fsp4HI | GCNGC | 3 cut(s) | 84, 87, 335 |
| FspBI | CTAG | 2 cut(s) | 80, 384 |
| GluI | GCNGC | 3 cut(s) | 84, 87, 335 |
| HaeIII | GGCC | 1 cut(s) | 262 |
| Hin1II | CATG | 8 cut(s) | 71, 192, 281, 344, 391, 554, 603, 769 |
| HincII | GTYRAC | 2 cut(s) | 411, 679 |
| HindII | GTYRAC | 2 cut(s) | 411, 679 |
| HinfI | GANTC | 3 cut(s) | 35, 182, 714 |
| HpaI | GTTAAC | 1 cut(s) | 411 |
| Hpy166II | GTNNAC | 7 cut(s) | 136, 200, 238, 247, 411, 522, 679 |
| Hpy188I | TCNGA | 2 cut(s) | 595, 640 |
| Hpy188III | TCNNGA | 3 cut(s) | 399, 551, 752 |
| Hpy8I | GTNNAC | 7 cut(s) | 136, 200, 238, 247, 411, 522, 679 |
| HpyAV | CCTTC | 4 cut(s) | 276, 280, 616, 746 |
| HpyCH4III | ACNGT | 2 cut(s) | 174, 691 |
| HpyCH4V | TGCA | 4 cut(s) | 89, 192, 440, 561 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 432, 468 |
| HpyF3I | CTNAG | 2 cut(s) | 102, 511 |
| Hsp92II | CATG | 8 cut(s) | 71, 192, 281, 344, 391, 554, 603, 769 |
| KspAI | GTTAAC | 1 cut(s) | 411 |
| LmnI | GCTCC | 1 cut(s) | 154 |
| LpnPI | CCDG | 8 cut(s) | 17, 32, 44, 130, 244, 384, 565, 765 |
| Lsp1109I | GCAGC | 2 cut(s) | 70, 73 |
| LweI | GCATC | 3 cut(s) | 355, 570, 745 |
| MaeI | CTAG | 2 cut(s) | 80, 384 |
| MaeIII | GTNAC | 1 cut(s) | 168 |
| MboII | GAAGA | 5 cut(s) | 15, 214, 320, 503, 653 |
| MhlI | GDGCHC | 2 cut(s) | 151, 657 |
| MlyI | GAGTC | 1 cut(s) | 29 |
| MmeI | TCCRAC | 1 cut(s) | 573 |
| MnlI | CCTC | 8 cut(s) | 46, 162, 196, 334, 487, 589, 694, 731 |
| MseI | TTAA | 2 cut(s) | 410, 633 |
| MspA1I | CMGCKG | 1 cut(s) | 334 |
| MspR9I | CCNGG | 1 cut(s) | 32 |
| MvaI | CCWGG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 432, 468 |
| NcoI | CCATGG | 1 cut(s) | 277 |
| NlaIII | CATG | 8 cut(s) | 71, 192, 281, 344, 391, 554, 603, 769 |
| NlaIV | GGNNCC | 1 cut(s) | 150 |
| NspI | RCATGY | 2 cut(s) | 71, 603 |
| PaeI | GCATGC | 1 cut(s) | 71 |
| PagI | TCATGA | 1 cut(s) | 550 |
| PfeI | GAWTC | 2 cut(s) | 182, 714 |
| PkrI | GCNGC | 3 cut(s) | 85, 88, 336 |
| PleI | GAGTC | 1 cut(s) | 29 |
| PpsI | GAGTC | 1 cut(s) | 29 |
| Psp6I | CCWGG | 1 cut(s) | 30 |
| PspGI | CCWGG | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 1 cut(s) | 150 |
| PspPI | GGNCC | 1 cut(s) | 261 |
| RsaI | GTAC | 1 cut(s) | 523 |
| RsaNI | GTAC | 1 cut(s) | 522 |
| SaqAI | TTAA | 2 cut(s) | 410, 633 |
| SatI | GCNGC | 3 cut(s) | 84, 87, 335 |
| Sau96I | GGNCC | 1 cut(s) | 261 |
| SchI | GAGTC | 1 cut(s) | 29 |
| ScrFI | CCNGG | 1 cut(s) | 32 |
| SduI | GDGCHC | 2 cut(s) | 151, 657 |
| SetI | ASST | 4 cut(s) | 85, 103, 246, 723 |
| SfaNI | GCATC | 3 cut(s) | 355, 570, 745 |
| SphI | GCATGC | 1 cut(s) | 71 |
| SsiI | CCGC | 1 cut(s) | 334 |
| SspMI | CTAG | 2 cut(s) | 80, 384 |
| StyD4I | CCNGG | 1 cut(s) | 30 |
| StyI | CCWWGG | 1 cut(s) | 277 |
| TaaI | ACNGT | 2 cut(s) | 174, 691 |
| TaqI | TCGA | 2 cut(s) | 115, 574 |
| TauI | GCSGC | 1 cut(s) | 337 |
| TfiI | GAWTC | 2 cut(s) | 182, 714 |
| Tru1I | TTAA | 2 cut(s) | 410, 633 |
| Tru9I | TTAA | 2 cut(s) | 410, 633 |
| TscAI | CASTG | 3 cut(s) | 149, 179, 688 |
| TseI | GCWGC | 2 cut(s) | 83, 86 |
| TspDTI | ATGAA | 6 cut(s) | 140, 329, 404, 567, 754, 792 |
| TspRI | CASTG | 3 cut(s) | 149, 179, 688 |
| XapI | RAATTY | 2 cut(s) | 217, 393 |
| XceI | RCATGY | 2 cut(s) | 71, 603 |
| XmiI | GTMKAC | 3 cut(s) | 199, 237, 246 |
| XspI | CTAG | 2 cut(s) | 80, 384 |