Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Forward (+)

8661838 .. 8664007

Gene Structure 2170 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGTATTATCAGTTGACCAAGTCTTCTTACAGAGACTCTTTGAAGATTCTGGAGGCTGATATTGAGCACGCCAATGGACTGGCTGCTGAGATTCCAATGGGAAAGAGCGGTGTGCGACTTCAGATGAAATTGGTGTGCAGCAATTTGGCTCCATTCTTCATATTCCTGCTACAATGGATGGATTTCTCATGTCTGCTTCCAAGATATTTTGATTTCTTCCACATACTCATATACAAGGTACGTGCTGATGGGCGGTGGAATCGATCTAGGTACGGAAGGAAAGCTACGATTAGGGAGTTTTACGGTGTTATATTACCATCACTTGAGCGACTTCATATCAACTTTGCTGACTTACCGGACGAAAGCTTGTGGTATCCGAATCCAAAAGCCATCACCAAGAAGCAGTATGACATTGAAGGTAGCAGATACATGAATAGCATTGACTTGGAAAGAGAAGACGAATGCGGGATTTGCTTAGAGCCTTGCACCAAAATGGTGTTGCCAAACTGTTGTCATGCCATGTGCATCAAATGTTACCGTAACTGGAACACAAAGTCGGAGTCATGCCCGTTTTGTCGTGGCAGCATCAAGAGAGTGAACTCAGAGGATCTGTGGGTGCTAACTTGCGATGAAGATGTGGTGGATCCAGAGACGGTCACCAAAGAGGATCTTCTTCGGTTCTACCTCCACATCAATAGCCTTCCTAAGGATTATCCAGAAGCGGCCTTCTTAGTCTACAACGAGTACTTGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

251

Amino Acids

29.49

Weight (kDa)

6.0

Isoelectric Point (pI)

60.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	152 - 199	1.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	153 - 193	9.1e-07	Ring finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	108
AccI	GTMKAC	1 cut(s)	735
AciI	CCGC	4 cut(s)	108, 253, 465, 722
AclWI	GGATC	4 cut(s)	615, 638, 651, 675
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	3 cut(s)	240, 272, 746
AfiI	CCNNNNNNNGG	1 cut(s)	706
AgsI	TTSAA	2 cut(s)	43, 416
AluBI	AGCT	2 cut(s)	284, 366
AluI	AGCT	2 cut(s)	284, 366
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	2 cut(s)	27, 644
AlwI	GGATC	4 cut(s)	615, 638, 651, 675
AoxI	GGCC	1 cut(s)	723
ApeKI	GCWGC	3 cut(s)	83, 138, 582
ArsI	GACNNNNNNTTYG	2 cut(s)	545, 577
AsuHPI	GGTGA	2 cut(s)	385, 649
AxyI	CCTNAGG	1 cut(s)	705
BamHI	GGATCC	1 cut(s)	643
BarI	GAAGNNNNNNTAC	2 cut(s)	268, 300
BbsI	GAAGAC	2 cut(s)	15, 462
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	3 cut(s)	70, 150, 594
BccI	CCATC	4 cut(s)	172, 242, 325, 398
BciVI	GTATCC	1 cut(s)	384
BcoDI	GTCTC	2 cut(s)	27, 644
BfaI	CTAG	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	384
BisI	GCNGC	4 cut(s)	84, 139, 583, 723
BlsI	GCNGC	4 cut(s)	85, 140, 584, 724
BmcAI	AGTACT	1 cut(s)	746
BmiI	GGNNCC	2 cut(s)	150, 645
BmsI	GCATC	2 cut(s)	534, 594
BpiI	GAAGAC	2 cut(s)	15, 462
BpmI	CTGGAG	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	262
BsaAI	YACGTR	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	355
Bsc4I	CCNNNNNNNGG	1 cut(s)	706
Bse1I	ACTGG	2 cut(s)	84, 548
Bse21I	CCTNAGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	262
BseGI	GGATG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	78, 615
BseNI	ACTGG	2 cut(s)	84, 548
BseXI	GCAGC	3 cut(s)	70, 150, 594
BsgI	GTGCAG	1 cut(s)	157
BshFI	GGCC	1 cut(s)	725
BshVI	ATCGAT	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	356
BslI	CCNNNNNNNGG	1 cut(s)	706
BsmAI	GTCTC	2 cut(s)	27, 644
BsmBI	CGTCTC	1 cut(s)	644
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	1 cut(s)	725
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	263, 607, 643, 667
BspACI	CCGC	4 cut(s)	108, 253, 465, 722
BspANI	GGCC	1 cut(s)	725
BspCNI	CTCAG	2 cut(s)	79, 614
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	150, 645
BspPI	GGATC	4 cut(s)	615, 638, 651, 675
BsrBI	CCGCTC	1 cut(s)	108
BsrI	ACTGG	2 cut(s)	84, 548
BssMI	GATC	4 cut(s)	263, 607, 643, 667
Bst4CI	ACNGT	4 cut(s)	305, 509, 539, 655
BstBAI	YACGTR	1 cut(s)	242
BstC8I	GCNNGC	1 cut(s)	69
BstDEI	CTNAG	5 cut(s)	87, 475, 601, 705, 730
BstEII	GGTNACC	1 cut(s)	655
BstENI	CCTNNNNNAGG	1 cut(s)	704
BstF5I	GGATG	1 cut(s)	183
BstKTI	GATC	4 cut(s)	266, 610, 646, 670
BstMAI	GTCTC	2 cut(s)	27, 644
BstMBI	GATC	4 cut(s)	263, 607, 643, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	471
BstPI	GGTNACC	1 cut(s)	655
BstV1I	GCAGC	3 cut(s)	70, 150, 594
BstV2I	GAAGAC	2 cut(s)	15, 462
BstX2I	RGATCY	3 cut(s)	607, 643, 667
BstXI	CCANNNNNNTGG	1 cut(s)	79
BstYI	RGATCY	3 cut(s)	607, 643, 667
Bsu15I	ATCGAT	1 cut(s)	262
Bsu36I	CCTNAGG	1 cut(s)	705
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	725
BsuTUI	ATCGAT	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	642
BtsCI	GGATG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	69
ClaI	ATCGAT	1 cut(s)	262
Csp6I	GTAC	3 cut(s)	239, 271, 745
CviAII	CATG	5 cut(s)	189, 430, 515, 520, 564
CviJI	RGCY	9 cut(s)	56, 83, 149, 284, 366, 389, 481, 699, 725
CviKI_1	RGCY	9 cut(s)	56, 83, 149, 284, 366, 389, 481, 699, 725
CviQI	GTAC	3 cut(s)	239, 271, 745
DdeI	CTNAG	5 cut(s)	87, 475, 601, 705, 730
DpnI	GATC	4 cut(s)	265, 609, 645, 669
DpnII	GATC	4 cut(s)	263, 607, 643, 667
Eco57I	CTGAAG	1 cut(s)	104
Eco81I	CCTNAGG	1 cut(s)	705
Eco91I	GGTNACC	1 cut(s)	655
EcoNI	CCTNNNNNAGG	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	655
Esp3I	CGTCTC	1 cut(s)	644
FaeI	CATG	5 cut(s)	192, 433, 518, 523, 567
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FatI	CATG	5 cut(s)	188, 429, 514, 519, 563
FauI	CCCGC	1 cut(s)	458
FblI	GTMKAC	1 cut(s)	735
Fnu4HI	GCNGC	4 cut(s)	84, 139, 583, 723
FokI	GGATG	1 cut(s)	190
Fsp4HI	GCNGC	4 cut(s)	84, 139, 583, 723
FspBI	CTAG	1 cut(s)	267
GluI	GCNGC	4 cut(s)	84, 139, 583, 723
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	725
HapII	CCGG	1 cut(s)	356
Hin1II	CATG	5 cut(s)	192, 433, 518, 523, 567
HincII	GTYRAC	1 cut(s)	15
HindII	GTYRAC	1 cut(s)	15
HindIII	AAGCTT	1 cut(s)	364
HinfI	GANTC	6 cut(s)	35, 46, 91, 259, 379, 560
HpaII	CCGG	1 cut(s)	356
HphI	GGTGA	2 cut(s)	385, 649
Hpy166II	GTNNAC	3 cut(s)	15, 598, 736
Hpy188I	TCNGA	4 cut(s)	123, 378, 559, 604
Hpy188III	TCNNGA	4 cut(s)	50, 589, 647, 716
Hpy8I	GTNNAC	3 cut(s)	15, 598, 736
HpyAV	CCTTC	4 cut(s)	270, 410, 710, 736
HpyCH4III	ACNGT	4 cut(s)	305, 509, 539, 655
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	138, 486, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	471
HpyF3I	CTNAG	5 cut(s)	87, 475, 601, 705, 730
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	5 cut(s)	192, 433, 518, 523, 567
Kzo9I	GATC	4 cut(s)	263, 607, 643, 667
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	7 cut(s)	35, 65, 179, 369, 529, 660, 729
Lsp1109I	GCAGC	3 cut(s)	70, 150, 594
LweI	GCATC	2 cut(s)	534, 594
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	3 cut(s)	533, 539, 655
MalI	GATC	4 cut(s)	265, 609, 645, 669
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	4 cut(s)	263, 607, 643, 667
MboII	GAAGA	8 cut(s)	15, 55, 148, 208, 467, 644, 662, 665
MflI	RGATCY	3 cut(s)	607, 643, 667
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	2 cut(s)	128, 142
MlyI	GAGTC	2 cut(s)	29, 569
MmeI	TCCRAC	1 cut(s)	537
MnlI	CCTC	4 cut(s)	46, 598, 658, 695
MslI	CAYNNNNRTG	2 cut(s)	72, 491
MspI	CCGG	1 cut(s)	356
Mva1269I	GAATGC	1 cut(s)	467
MwoI	GCNNNNNNNGC	1 cut(s)	471
NdeII	GATC	4 cut(s)	263, 607, 643, 667
NlaIII	CATG	5 cut(s)	192, 433, 518, 523, 567
NlaIV	GGNNCC	2 cut(s)	150, 645
NmuCI	GTSAC	1 cut(s)	655
PctI	GAATGC	1 cut(s)	467
PfeI	GAWTC	4 cut(s)	46, 91, 259, 379
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	4 cut(s)	85, 140, 584, 724
PleI	GAGTC	2 cut(s)	29, 568
PpsI	GAGTC	2 cut(s)	29, 568
Ppu21I	YACGTR	1 cut(s)	242
PspEI	GGTNACC	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	150, 645
PsuI	RGATCY	3 cut(s)	607, 643, 667
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	3 cut(s)	240, 272, 746
RsaNI	GTAC	3 cut(s)	239, 271, 745
RseI	CAYNNNNRTG	2 cut(s)	72, 491
SatI	GCNGC	4 cut(s)	84, 139, 583, 723
Sau3AI	GATC	4 cut(s)	263, 607, 643, 667
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	2 cut(s)	29, 569
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	7 cut(s)	240, 244, 272, 286, 368, 421, 687
SfaNI	GCATC	2 cut(s)	534, 594
SmiMI	CAYNNNNRTG	2 cut(s)	72, 491
SmlI	CTYRAG	1 cut(s)	323
SmoI	CTYRAG	1 cut(s)	323
Sse9I	AATT	2 cut(s)	128, 142
SsiI	CCGC	4 cut(s)	108, 253, 465, 722
SspMI	CTAG	1 cut(s)	267
TaaI	ACNGT	4 cut(s)	305, 509, 539, 655
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	128, 142
TatI	WGTACW	1 cut(s)	744
TauI	GCSGC	1 cut(s)	725
TfiI	GAWTC	4 cut(s)	46, 91, 259, 379
TseFI	GTSAC	1 cut(s)	655
TseI	GCWGC	3 cut(s)	83, 138, 582
Tsp45I	GTSAC	1 cut(s)	655
TspDTI	ATGAA	5 cut(s)	140, 148, 323, 446, 645
TspGWI	ACGGA	1 cut(s)	288
Tth111I	GACNNNGTC	1 cut(s)	19
XagI	CCTNNNNNAGG	1 cut(s)	704
XmiI	GTMKAC	1 cut(s)	735
XspI	CTAG	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.