Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009146

Physical Location & Seq

Genomic Coordinates Forward (+)

25314689 .. 25317408

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G238500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGAGATGATATATTACCAGCCTTCTTACCAGGAATCCTTGAATGTTCTGGAGGCTGATATACAGCATGCCAATTCTCTAGCTGCTGCAATTCCAAGAGGCAAGGGCGGTGCCCGTTTTCAGATGAAATTGGTTTACAATCACTTGGCTCCCCTCTTTCTGTTTTTGTTACAGTGGATTGATTGCTCATGCACATGTCTACTCCCAAGATATCTAAATTTCTTCCACATACTGGTCTACAAGGTGTACACTGATGGCAGGCCTACAATTTCAACCCATGGAAGGAAAGCAACTATAAGAGATTTCTATTCCGTTATCTTACCATCTCTTCAGCGGCTTCATGGGGATTTGGGGGAGTTAGACGATGCTAAGGAAGGGTATCCTAGCATGGAAAGCTCCGGAAAGAAGATGATTAGAGGAGATGGTAGCCTTGTCAATGCTGAGTTGGAGAGAGAAGAGGAGTGTGGAATTTGTTTGGAGCCTTGCACCAAAGTGGTCTTGCCAAATTGCTGTCATGCAATGTGCATCAAATGCTACCGCAATTGGAATCGAAAGTCAGAGTCTTGCCCTTTTTGTCGCGGTAATATAAAGAGAGTTAATTCTCAAGACTTATGGGTGCTCACTTGCAATGAAGATGTGGTTGACACTGAAACGGTTAATAAGGAGGATTTGTTGCGTTTCTACCTCTATATCAACAGCCTGCCAAAAGATTACCCAGATGCCCTTTTCTTGGTGTATTATGAGTACTCTAATTTGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_2

Protein Analysis

254

Amino Acids

29.19

Weight (kDa)

5.89

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13195 AT1G13195 AT1G24440 AT1G24440
fragaria_vesca	FvH4_4g24910 FvH4_4g24910
malus_domestica	MD13G1107900.v1.1 MD16G1107800.v1.1
prunus_persica	Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1
pyrus_communis	pycom13g09330 pycom16g09200
rosa_chinensis	RchiOBHm_Chr4g0431971
rosa_laevigata	RLG00000006870
rosa_multiflora	Rmu_sc0004965.1_g000015
rosa_roxburghii	Rroxscaffold_5G00373410
rosa_rugosa	Rorug04G0253800
rosa_samantha	Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000
rosa_wichuraiana	Rw4G027050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccI	GTMKAC	2 cut(s)	199, 237
AccII	CGCG	1 cut(s)	579
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	4 cut(s)	108, 334, 538, 579
AcsI	RAATTY	2 cut(s)	217, 468
AcuI	CTGAAG	1 cut(s)	314
AfaI	GTAC	2 cut(s)	248, 746
AfiI	CCNNNNNNNGG	3 cut(s)	232, 282, 730
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	43, 273
AjnI	CCWGG	1 cut(s)	30
AleI	CACNNNNGTG	1 cut(s)	491
AluBI	AGCT	2 cut(s)	83, 396
AluI	AGCT	2 cut(s)	83, 396
Alw21I	GWGCWC	1 cut(s)	621
Aor13HI	TCCGGA	1 cut(s)	398
AoxI	GGCC	1 cut(s)	260
ApeKI	GCWGC	2 cut(s)	83, 86
ApoI	RAATTY	2 cut(s)	217, 468
BaeGI	GKGCMC	1 cut(s)	115
BanI	GGYRCC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	70, 73
BccI	CCATC	3 cut(s)	248, 331, 416
BciT130I	CCWGG	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	390
BfaI	CTAG	2 cut(s)	80, 384
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	3 cut(s)	84, 87, 335
BlsI	GCNGC	3 cut(s)	85, 88, 336
BmcAI	AGTACT	1 cut(s)	746
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	112, 150, 480
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	3 cut(s)	355, 534, 709
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	588
BsaJI	CCNNGG	1 cut(s)	277
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	3 cut(s)	232, 282, 730
Bse1I	ACTGG	1 cut(s)	237
Bse3DI	GCAATG	2 cut(s)	525, 634
BseAI	TCCGGA	1 cut(s)	398
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	277
BseLI	CCNNNNNNNGG	3 cut(s)	232, 282, 730
BseMI	GCAATG	2 cut(s)	525, 634
BseMII	CTCAG	1 cut(s)	432
BseNI	ACTGG	1 cut(s)	237
BseRI	GAGGAG	2 cut(s)	432, 473
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	2 cut(s)	70, 73
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	262
BshNI	GGYRCC	1 cut(s)	110
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	1 cut(s)	399
BslI	CCNNNNNNNGG	3 cut(s)	232, 282, 730
BsnI	GGCC	1 cut(s)	262
Bsp1286I	GDGCHC	2 cut(s)	115, 621
Bsp13I	TCCGGA	1 cut(s)	398
Bsp1407I	TGTACA	1 cut(s)	246
Bsp19I	CCATGG	1 cut(s)	277
BspACI	CCGC	4 cut(s)	108, 334, 538, 579
BspANI	GGCC	1 cut(s)	262
BspCNI	CTCAG	1 cut(s)	433
BspEI	TCCGGA	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	3 cut(s)	112, 150, 480
BspT107I	GGYRCC	1 cut(s)	110
BsrDI	GCAATG	2 cut(s)	525, 634
BsrGI	TGTACA	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	2 cut(s)	174, 655
Bst6I	CTCTTC	2 cut(s)	333, 450
BstAPI	GCANNNNNTGC	1 cut(s)	531
BstAUI	TGTACA	1 cut(s)	246
BstC8I	GCNNGC	3 cut(s)	69, 260, 701
BstDEI	CTNAG	2 cut(s)	369, 441
BstDSI	CCRYGG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	579
BstMWI	GCNNNNNNNGC	2 cut(s)	393, 531
BstNI	CCWGG	1 cut(s)	32
BstNSI	RCATGY	2 cut(s)	71, 198
BstSCI	CCNGG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	115
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	2 cut(s)	70, 73
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	262
BtgI	CCRYGG	1 cut(s)	277
BtsIMutI	CAGTG	3 cut(s)	179, 249, 645
Cac8I	GCNNGC	3 cut(s)	69, 260, 701
Csp6I	GTAC	2 cut(s)	247, 745
CviAII	CATG	7 cut(s)	68, 189, 195, 278, 341, 388, 515
CviQI	GTAC	2 cut(s)	247, 745
DdeI	CTNAG	2 cut(s)	369, 441
Eam1104I	CTCTTC	2 cut(s)	333, 450
EarI	CTCTTC	2 cut(s)	333, 450
Eco130I	CCWWGG	1 cut(s)	277
Eco147I	AGGCCT	1 cut(s)	262
Eco32I	GATATC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	30
EcoRV	GATATC	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
FaeI	CATG	7 cut(s)	71, 192, 198, 281, 344, 391, 518
FatI	CATG	7 cut(s)	67, 188, 194, 277, 340, 387, 514
FblI	GTMKAC	2 cut(s)	199, 237
Fnu4HI	GCNGC	3 cut(s)	84, 87, 335
Fsp4HI	GCNGC	3 cut(s)	84, 87, 335
FspBI	CTAG	2 cut(s)	80, 384
GluI	GCNGC	3 cut(s)	84, 87, 335
GsuI	CTGGAG	1 cut(s)	71
HaeIII	GGCC	1 cut(s)	262
HapII	CCGG	1 cut(s)	399
Hin1II	CATG	7 cut(s)	71, 192, 198, 281, 344, 391, 518
HincII	GTYRAC	1 cut(s)	643
HindII	GTYRAC	1 cut(s)	643
HinfI	GANTC	3 cut(s)	35, 547, 560
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	6 cut(s)	136, 200, 238, 247, 249, 643
Hpy188I	TCNGA	2 cut(s)	123, 559
Hpy188III	TCNNGA	3 cut(s)	50, 399, 605
Hpy8I	GTNNAC	6 cut(s)	136, 200, 238, 247, 249, 643
HpyAV	CCTTC	3 cut(s)	33, 276, 368
HpyCH4III	ACNGT	2 cut(s)	174, 655
HpyCH4V	TGCA	6 cut(s)	89, 192, 486, 518, 525, 627
HpyF10VI	GCNNNNNNNGC	2 cut(s)	393, 531
HpyF3I	CTNAG	2 cut(s)	369, 441
Hsp92II	CATG	7 cut(s)	71, 192, 198, 281, 344, 391, 518
Kpn2I	TCCGGA	1 cut(s)	398
LmnI	GCTCC	3 cut(s)	154, 401, 478
LpnPI	CCDG	9 cut(s)	17, 32, 35, 44, 218, 244, 412, 713, 729
Lsp1109I	GCAGC	2 cut(s)	70, 73
LweI	GCATC	3 cut(s)	355, 534, 709
MaeI	CTAG	2 cut(s)	80, 384
MaeIII	GTNAC	1 cut(s)	168
MboII	GAAGA	5 cut(s)	214, 320, 418, 467, 644
MfeI	CAATTG	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	115, 621
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	7 cut(s)	46, 92, 164, 410, 451, 658, 695
MroI	TCCGGA	1 cut(s)	398
MseI	TTAA	2 cut(s)	597, 657
MslI	CAYNNNNRTG	2 cut(s)	193, 491
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	32
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	2 cut(s)	393, 531
NcoI	CCATGG	1 cut(s)	277
NlaIII	CATG	7 cut(s)	71, 192, 198, 281, 344, 391, 518
NlaIV	GGNNCC	3 cut(s)	112, 150, 480
NspI	RCATGY	2 cut(s)	71, 198
OliI	CACNNNNGTG	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	262
PciI	ACATGT	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	35, 547
PflMI	CCANNNNNTGG	1 cut(s)	232
PkrI	GCNGC	3 cut(s)	85, 88, 336
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PscI	ACATGT	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	112, 150, 480
RsaI	GTAC	2 cut(s)	248, 746
RsaNI	GTAC	2 cut(s)	247, 745
RseI	CAYNNNNRTG	2 cut(s)	193, 491
SaqAI	TTAA	2 cut(s)	597, 657
SatI	GCNGC	3 cut(s)	84, 87, 335
ScaI	AGTACT	1 cut(s)	746
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	115, 621
SetI	ASST	4 cut(s)	85, 246, 398, 687
SfaNI	GCATC	3 cut(s)	355, 534, 709
SmiMI	CAYNNNNRTG	2 cut(s)	193, 491
SmlI	CTYRAG	1 cut(s)	603
SmoI	CTYRAG	1 cut(s)	603
SphI	GCATGC	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	108, 334, 538, 579
SspMI	CTAG	2 cut(s)	80, 384
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	1 cut(s)	30
StyI	CCWWGG	1 cut(s)	277
TaaI	ACNGT	2 cut(s)	174, 655
TaqI	TCGA	1 cut(s)	550
TatI	WGTACW	2 cut(s)	246, 744
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	2 cut(s)	35, 547
Tru1I	TTAA	2 cut(s)	597, 657
Tru9I	TTAA	2 cut(s)	597, 657
TscAI	CASTG	3 cut(s)	179, 256, 652
TseI	GCWGC	2 cut(s)	83, 86
TspDTI	ATGAA	3 cut(s)	140, 329, 645
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	3 cut(s)	179, 256, 652
Van91I	CCANNNNNTGG	1 cut(s)	232
XapI	RAATTY	2 cut(s)	217, 468
XceI	RCATGY	2 cut(s)	71, 198
XmiI	GTMKAC	2 cut(s)	199, 237
XspI	CTAG	2 cut(s)	80, 384
ZrmI	AGTACT	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.