Zinc finger, C3HC4 type (RING finger)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G13195 AT1G13195 AT1G24440 AT1G24440 |
| fragaria_vesca | FvH4_4g24910 FvH4_4g24910 |
| malus_domestica | MD13G1107900.v1.1 MD16G1107800.v1.1 |
| prunus_persica | Prupe.1G238500_v2.0.a1 Prupe.1G238500_v2.0.a1 |
| pyrus_communis | pycom13g09330 pycom16g09200 |
| rosa_chinensis | RchiOBHm_Chr4g0431971 |
| rosa_laevigata | RLG00000006870 |
| rosa_multiflora | Rmu_sc0004965.1_g000015 |
| rosa_roxburghii | Rroxscaffold_5G00373410 |
| rosa_rugosa | Rorug04G0253800 |
| rosa_samantha | Rh4AG310900 Rh4BG318000 Rh4CG333400 Rh4DG313000 |
| rosa_wichuraiana | Rw4G027050 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 76, 114, 123 |
| AciI | CCGC | 1 cut(s) | 211 |
| AcsI | RAATTY | 3 cut(s) | 94, 270, 511 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfaI | GTAC | 1 cut(s) | 659 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 159 |
| AgsI | TTSAA | 2 cut(s) | 150, 573 |
| AluBI | AGCT | 1 cut(s) | 326 |
| AluI | AGCT | 1 cut(s) | 326 |
| Alw21I | GWGCWC | 2 cut(s) | 401, 534 |
| Alw44I | GTGCAC | 1 cut(s) | 397 |
| AoxI | GGCC | 2 cut(s) | 137, 474 |
| ApaLI | GTGCAC | 1 cut(s) | 397 |
| ApoI | RAATTY | 3 cut(s) | 94, 270, 511 |
| AspS9I | GGNCC | 1 cut(s) | 409 |
| AvaII | GGWCC | 1 cut(s) | 409 |
| BaeGI | GKGCMC | 1 cut(s) | 401 |
| BanII | GRGCYC | 1 cut(s) | 28 |
| BbsI | GAAGAC | 1 cut(s) | 525 |
| Bbv12I | GWGCWC | 2 cut(s) | 401, 534 |
| BbvCI | CCTCAGC | 1 cut(s) | 246 |
| BccI | CCATC | 1 cut(s) | 125 |
| BceAI | ACGGC | 1 cut(s) | 379 |
| BfaI | CTAG | 1 cut(s) | 261 |
| BisI | GCNGC | 1 cut(s) | 212 |
| BlsI | GCNGC | 1 cut(s) | 213 |
| BmcAI | AGTACT | 1 cut(s) | 659 |
| Bme18I | GGWCC | 1 cut(s) | 409 |
| BmgT120I | GGNCC | 1 cut(s) | 409 |
| BmiI | GGNNCC | 1 cut(s) | 27 |
| BmsI | GCATC | 4 cut(s) | 232, 265, 447, 622 |
| BpiI | GAAGAC | 1 cut(s) | 525 |
| Bpu10I | CCTNAGC | 1 cut(s) | 246 |
| BsaJI | CCNNGG | 1 cut(s) | 154 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 569, 599 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 159 |
| Bse1I | ACTGG | 1 cut(s) | 461 |
| BseDI | CCNNGG | 1 cut(s) | 154 |
| BseGI | GGATG | 1 cut(s) | 256 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 159 |
| BseMII | CTCAG | 2 cut(s) | 237, 345 |
| BseNI | ACTGG | 1 cut(s) | 461 |
| BseRI | GAGGAG | 1 cut(s) | 386 |
| BseSI | GKGCMC | 1 cut(s) | 401 |
| BshFI | GGCC | 2 cut(s) | 139, 476 |
| BsiHKAI | GWGCWC | 2 cut(s) | 401, 534 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 159 |
| BsnI | GGCC | 2 cut(s) | 139, 476 |
| Bsp1286I | GDGCHC | 3 cut(s) | 28, 401, 534 |
| Bsp19I | CCATGG | 1 cut(s) | 154 |
| BspACI | CCGC | 1 cut(s) | 211 |
| BspANI | GGCC | 2 cut(s) | 139, 476 |
| BspCNI | CTCAG | 2 cut(s) | 238, 346 |
| BspHI | TCATGA | 1 cut(s) | 427 |
| BspLI | GGNNCC | 1 cut(s) | 27 |
| BspQI | GCTCTTC | 1 cut(s) | 246 |
| BsrI | ACTGG | 1 cut(s) | 461 |
| BssECI | CCNNGG | 1 cut(s) | 154 |
| BssNAI | GTATAC | 1 cut(s) | 124 |
| BssT1I | CCWWGG | 1 cut(s) | 154 |
| Bst1107I | GTATAC | 1 cut(s) | 124 |
| Bst4CI | ACNGT | 2 cut(s) | 51, 568 |
| Bst6I | CTCTTC | 4 cut(s) | 38, 210, 246, 363 |
| BstC8I | GCNNGC | 2 cut(s) | 137, 614 |
| BstDEI | CTNAG | 3 cut(s) | 246, 354, 388 |
| BstDSI | CCRYGG | 1 cut(s) | 154 |
| BstF5I | GGATG | 1 cut(s) | 256 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 323, 345 |
| BstSLI | GKGCMC | 1 cut(s) | 401 |
| BstV2I | GAAGAC | 1 cut(s) | 525 |
| BstZ17I | GTATAC | 1 cut(s) | 124 |
| BsuRI | GGCC | 2 cut(s) | 139, 476 |
| BtgI | CCRYGG | 1 cut(s) | 154 |
| BtsCI | GGATG | 1 cut(s) | 256 |
| BtsI | GCAGTG | 1 cut(s) | 319 |
| BtsIMutI | CAGTG | 3 cut(s) | 56, 319, 558 |
| Cac8I | GCNNGC | 2 cut(s) | 137, 614 |
| CciI | TCATGA | 1 cut(s) | 427 |
| Cfr13I | GGNCC | 1 cut(s) | 409 |
| Csp6I | GTAC | 1 cut(s) | 658 |
| CviAII | CATG | 4 cut(s) | 155, 218, 265, 428 |
| CviJI | RGCY | 7 cut(s) | 26, 139, 214, 326, 394, 476, 612 |
| CviKI_1 | RGCY | 7 cut(s) | 26, 139, 214, 326, 394, 476, 612 |
| CviQI | GTAC | 1 cut(s) | 658 |
| DdeI | CTNAG | 3 cut(s) | 246, 354, 388 |
| Eam1104I | CTCTTC | 4 cut(s) | 38, 210, 246, 363 |
| EarI | CTCTTC | 4 cut(s) | 38, 210, 246, 363 |
| Eco130I | CCWWGG | 1 cut(s) | 154 |
| Eco147I | AGGCCT | 1 cut(s) | 476 |
| Eco24I | GRGCYC | 1 cut(s) | 28 |
| Eco32I | GATATC | 1 cut(s) | 89 |
| Eco47I | GGWCC | 1 cut(s) | 409 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| EcoRV | GATATC | 1 cut(s) | 89 |
| EcoT14I | CCWWGG | 1 cut(s) | 154 |
| EcoT38I | GRGCYC | 1 cut(s) | 28 |
| ErhI | CCWWGG | 1 cut(s) | 154 |
| FaeI | CATG | 4 cut(s) | 158, 221, 268, 431 |
| FatI | CATG | 4 cut(s) | 154, 217, 264, 427 |
| FblI | GTMKAC | 3 cut(s) | 76, 114, 123 |
| Fnu4HI | GCNGC | 1 cut(s) | 212 |
| FokI | GGATG | 1 cut(s) | 243 |
| FriOI | GRGCYC | 1 cut(s) | 28 |
| Fsp4HI | GCNGC | 1 cut(s) | 212 |
| FspBI | CTAG | 1 cut(s) | 261 |
| GluI | GCNGC | 1 cut(s) | 212 |
| HaeIII | GGCC | 2 cut(s) | 139, 476 |
| Hin1II | CATG | 4 cut(s) | 158, 221, 268, 431 |
| HincII | GTYRAC | 1 cut(s) | 556 |
| HindII | GTYRAC | 1 cut(s) | 556 |
| HinfI | GANTC | 2 cut(s) | 59, 591 |
| Hpy166II | GTNNAC | 6 cut(s) | 13, 77, 115, 124, 399, 556 |
| Hpy188I | TCNGA | 2 cut(s) | 472, 517 |
| Hpy188III | TCNNGA | 3 cut(s) | 276, 428, 629 |
| Hpy8I | GTNNAC | 6 cut(s) | 13, 77, 115, 124, 399, 556 |
| HpyAV | CCTTC | 3 cut(s) | 153, 157, 210 |
| HpyCH4III | ACNGT | 2 cut(s) | 51, 568 |
| HpyCH4IV | ACGT | 1 cut(s) | 549 |
| HpyCH4V | TGCA | 4 cut(s) | 69, 317, 399, 438 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 323, 345 |
| HpyF3I | CTNAG | 3 cut(s) | 246, 354, 388 |
| HpySE526I | ACGT | 1 cut(s) | 549 |
| Hsp92II | CATG | 4 cut(s) | 158, 221, 268, 431 |
| LguI | GCTCTTC | 1 cut(s) | 246 |
| LmnI | GCTCC | 1 cut(s) | 31 |
| LpnPI | CCDG | 8 cut(s) | 50, 121, 261, 425, 442, 490, 626, 642 |
| LweI | GCATC | 4 cut(s) | 232, 265, 447, 622 |
| MaeI | CTAG | 1 cut(s) | 261 |
| MaeII | ACGT | 1 cut(s) | 549 |
| MaeIII | GTNAC | 2 cut(s) | 45, 446 |
| MboII | GAAGA | 7 cut(s) | 25, 91, 197, 263, 295, 380, 530 |
| MhlI | GDGCHC | 3 cut(s) | 28, 401, 534 |
| MluCI | AATT | 6 cut(s) | 5, 94, 233, 270, 511, 664 |
| MmeI | TCCRAC | 2 cut(s) | 339, 450 |
| MnlI | CCTC | 7 cut(s) | 41, 73, 241, 364, 466, 571, 608 |
| MslI | CAYNNNNRTG | 1 cut(s) | 404 |
| MspA1I | CMGCKG | 1 cut(s) | 211 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 323, 345 |
| NcoI | CCATGG | 1 cut(s) | 154 |
| NlaIII | CATG | 4 cut(s) | 158, 221, 268, 431 |
| NlaIV | GGNNCC | 1 cut(s) | 27 |
| PagI | TCATGA | 1 cut(s) | 427 |
| PceI | AGGCCT | 1 cut(s) | 476 |
| PciSI | GCTCTTC | 1 cut(s) | 246 |
| PfeI | GAWTC | 2 cut(s) | 59, 591 |
| PkrI | GCNGC | 1 cut(s) | 213 |
| PspN4I | GGNNCC | 1 cut(s) | 27 |
| PspPI | GGNCC | 1 cut(s) | 409 |
| RsaI | GTAC | 1 cut(s) | 659 |
| RsaNI | GTAC | 1 cut(s) | 658 |
| RseI | CAYNNNNRTG | 1 cut(s) | 404 |
| SapI | GCTCTTC | 1 cut(s) | 246 |
| SatI | GCNGC | 1 cut(s) | 212 |
| Sau96I | GGNCC | 1 cut(s) | 409 |
| ScaI | AGTACT | 1 cut(s) | 659 |
| SduI | GDGCHC | 3 cut(s) | 28, 401, 534 |
| SetI | ASST | 5 cut(s) | 123, 202, 328, 552, 600 |
| SfaNI | GCATC | 4 cut(s) | 232, 265, 447, 622 |
| SinI | GGWCC | 1 cut(s) | 409 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 404 |
| Sse9I | AATT | 6 cut(s) | 5, 94, 233, 270, 511, 664 |
| SseBI | AGGCCT | 1 cut(s) | 476 |
| SsiI | CCGC | 1 cut(s) | 211 |
| SspMI | CTAG | 1 cut(s) | 261 |
| StuI | AGGCCT | 1 cut(s) | 476 |
| StyI | CCWWGG | 1 cut(s) | 154 |
| TaaI | ACNGT | 2 cut(s) | 51, 568 |
| TaiI | ACGT | 1 cut(s) | 552 |
| TasI | AATT | 6 cut(s) | 5, 94, 233, 270, 511, 664 |
| TatI | WGTACW | 1 cut(s) | 657 |
| TauI | GCSGC | 1 cut(s) | 214 |
| TfiI | GAWTC | 2 cut(s) | 59, 591 |
| TscAI | CASTG | 3 cut(s) | 56, 319, 565 |
| TspDTI | ATGAA | 4 cut(s) | 17, 206, 281, 444 |
| TspRI | CASTG | 3 cut(s) | 56, 319, 565 |
| VneI | GTGCAC | 1 cut(s) | 397 |
| VpaK11BI | GGWCC | 1 cut(s) | 409 |
| XapI | RAATTY | 3 cut(s) | 94, 270, 511 |
| XmiI | GTMKAC | 3 cut(s) | 76, 114, 123 |
| XspI | CTAG | 1 cut(s) | 261 |
| ZrmI | AGTACT | 1 cut(s) | 659 |